mRNA_F-serratus_M_contig11.934.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig11.934.1
Unique NamemRNA_F-serratus_M_contig11.934.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig11.934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig11contigF-serratus_M_contig11:1440359..1442113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size326
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig11.934.1prot_F-serratus_M_contig11.934.1Fucus serratus malepolypeptideF-serratus_M_contig11 1440379..1442113 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.3255045-UTR-F-serratus_M_contig11:1440358..14403781622928960.3255045-UTR-F-serratus_M_contig11:1440358..1440378Fucus serratus maleUTRF-serratus_M_contig11 1440359..1440378 -
1690962646.9280336-UTR-F-serratus_M_contig11:1440358..14403781690962646.9280336-UTR-F-serratus_M_contig11:1440358..1440378Fucus serratus maleUTRF-serratus_M_contig11 1440359..1440378 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.3513265-CDS-F-serratus_M_contig11:1440378..14406001622928960.3513265-CDS-F-serratus_M_contig11:1440378..1440600Fucus serratus maleCDSF-serratus_M_contig11 1440379..1440600 -
1690962646.936346-CDS-F-serratus_M_contig11:1440378..14406001690962646.936346-CDS-F-serratus_M_contig11:1440378..1440600Fucus serratus maleCDSF-serratus_M_contig11 1440379..1440600 -
1622928960.364009-CDS-F-serratus_M_contig11:1442029..14421131622928960.364009-CDS-F-serratus_M_contig11:1442029..1442113Fucus serratus maleCDSF-serratus_M_contig11 1442030..1442113 -
1690962646.9652333-CDS-F-serratus_M_contig11:1442029..14421131690962646.9652333-CDS-F-serratus_M_contig11:1442029..1442113Fucus serratus maleCDSF-serratus_M_contig11 1442030..1442113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig11.934.1

>prot_F-serratus_M_contig11.934.1 ID=prot_F-serratus_M_contig11.934.1|Name=mRNA_F-serratus_M_contig11.934.1|organism=Fucus serratus male|type=polypeptide|length=102bp
MPETRYPHLPPGPSFTSSARPPAGFPPVERRPTERIIPLPFPPNNSTGPA
VARQTPPPTLLEEANHWSQQRNPNGEIYYLNTLTMEWQLETPDCLKKYTA
R*
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mRNA from alignment at F-serratus_M_contig11:1440359..1442113-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig11.934.1 ID=mRNA_F-serratus_M_contig11.934.1|Name=mRNA_F-serratus_M_contig11.934.1|organism=Fucus serratus male|type=mRNA|length=1755bp|location=Sequence derived from alignment at F-serratus_M_contig11:1440359..1442113- (Fucus serratus male)
ATGCCAGAAACACGTTACCCTCACCTCCCGCCCGGTCCTAGTTTCACCTC
CTCTGCCAGACCTCCGGCTGGGTTTCCCCCGGTGGTGAGTCTTGCTGCAC
AACCTACTTGGGGGTTTTCTGGACTGCGAGCGTCTCGAAGTTTTCCCTCT
CGGACAATAATGTTGCGATATTGCCCTGATTGCTTACTTTTTGCTTTCTA
TCGTTGTAGTTCGTGCATCTTCTGTTATCCCGTACTACTGTACTCTACCG
CAAAAAAAACATGTTGACTATCAAATTATACCTTGAGGGAGGGTTGAGAA
TAGACTTTTTGTGGTTAATTTCATGATGAAAAAGTATTGATGCTAGAGAA
AAACGATTTCCAAAAGTTTTAAGATACGGGGGCTGCGGTTGTTGAGTTCC
AATCCCAATGGCGAGGGTATCACCACTAACAATTCAAGCCGTTGGTAGTT
GAGAACTACCGATATTGGAGCAAAAGTTCGATGTTGTCGCCAGGCACAAA
TATTATCCTACACCTCAAAATGCACAGAAATTATGAACGCCTTTAAAATA
CACGTCGGGTACGATGAATTGAAACCACAATGCGGCCTATCCACGGAACG
AACTGGGTAAAAATATCGCTAAGCGCGTCCTCATGTGTTTTGTCGAAGAA
GAAACACTCTCTCGGAAACACGCCACACAGCAATATCAGCTATTAATAAG
GGTTTGTGCTTGGAAGTCTTAGAGGTCTGTGATGCACTGTCTGATATTAG
TAGCGAATATAAATATACCTTCCATACAACATCTAGGTAGGGCTCTGTAG
AACGTATGTATGTATCACAGTCAAGTTACCATACGAGGCGGCACAGAGTT
GACCAAGAGGTAGTGAAAGAACAAGAAGTAGACCCTACGAAATTTGTAGC
GCAATAACAAAACCAACGCAAAAACGATCCCTGAGACATTAAAACAACAG
GTAGTTACTATAAAAGTAGCAGCGTGGCAGCGCCGAAACAAATAGGTGGC
TCCTGGAGAAGACAGCCAAACCGAGCCCTTGTCAAAGAAAAATACAGCGA
AAGGGTAAACCAACGCTACAAAAAACAGCCAGAAAAAACAGCTTAGCGTG
ATATTTTTGAGTCAACGATAAATGAATTATACCGCCAACGGTACTCGGCC
CGCTTTCTCCCTGACGAGGGCTGGCTGTCAATAGGGTGGAGAGAGAGCCT
CGTCATCGGCACAAACAATGGCACGTTTAGATTATCAGATATTGCACCTT
CATTACATAACGCAATATATATGCACGAATGAGCGCCTAGTCCGAGGGGA
TACCCGTCCTATTAACTTGATCGAATGGGTTTTGTAATTTACCCAATGGG
AATGATGGTGTAAGCCAAATCCCCTGCTATGTTCGGATTATGTTGGAAAA
GAGGCATCGAACAGATTTGAGATAGCACCACCTCTCCTACCTATGACCTA
TATATTTATCCTCTTATACACAACCATTCGTGCTATTGACTTGTCCCAAA
CATTTTCCTGCAGGAGCGCAGGCCTACAGAGAGGATCATCCCTCTACCTT
TCCCTCCCAACAACTCCACGGGTCCTGCGGTCGCCCGCCAGACGCCGCCG
CCAACTCTACTAGAAGAGGCGAATCATTGGTCTCAACAGCGCAACCCAAA
CGGCGAGATATACTACTTGAACACGTTGACCATGGAATGGCAGCTCGAGA
CCCCGGACTGCCTCAAGAAGTACACGGCAAGATGACTGTCATAGCGTAGC
GTGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig11:1440359..1442113-

>mRNA_F-serratus_M_contig11.934.1 ID=mRNA_F-serratus_M_contig11.934.1|Name=mRNA_F-serratus_M_contig11.934.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig11:1440359..1442113- (Fucus serratus male)
ATGCCAGAAACACGTTACCCTCACCTCCCGCCCGGTCCTAGTTTCACCTC
CTCTGCCAGACCTCCGGCTGGGTTTCCCCCGGTGATGCCAGAAACACGTT
ACCCTCACCTCCCGCCCGGTCCTAGTTTCACCTCCTCTGCCAGACCTCCG
GCTGGGTTTCCCCCGGTGGAGCGCAGGCCTACAGAGAGGATCATCCCTCT
ACCTTTCCCTCCCAACAACTCCACGGGTCCTGCGGTCGCCCGCCAGACGC
CGCCGCCAACTCTACTAGAAGAGGCGAATCATTGGTCTCAACAGCGCAAC
CCAAACGGCGAGATATACTACTTGAACACGTTGACCATGGAATGGCAGCT
CGAGACCCCGGACTGCCTCAAGAAGTACACGGCAAGATGAGAGCGCAGGC
CTACAGAGAGGATCATCCCTCTACCTTTCCCTCCCAACAACTCCACGGGT
CCTGCGGTCGCCCGCCAGACGCCGCCGCCAACTCTACTAGAAGAGGCGAA
TCATTGGTCTCAACAGCGCAACCCAAACGGCGAGATATACTACTTGAACA
CGTTGACCATGGAATGGCAGCTCGAGACCCCGGACTGCCTCAAGAAGTAC
ACGGCAAGATGA
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