mRNA_F-serratus_M_contig11.932.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig11.932.1
Unique NamemRNA_F-serratus_M_contig11.932.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig11.932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig11contigF-serratus_M_contig11:1403219..1404272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size123
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig11.932.1prot_F-serratus_M_contig11.932.1Fucus serratus malepolypeptideF-serratus_M_contig11 1403219..1404229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.2041693-CDS-F-serratus_M_contig11:1403218..14033001622928960.2041693-CDS-F-serratus_M_contig11:1403218..1403300Fucus serratus maleCDSF-serratus_M_contig11 1403219..1403300 +
1690962646.8955667-CDS-F-serratus_M_contig11:1403218..14033001690962646.8955667-CDS-F-serratus_M_contig11:1403218..1403300Fucus serratus maleCDSF-serratus_M_contig11 1403219..1403300 +
1622928960.2452466-CDS-F-serratus_M_contig11:1404188..14042291622928960.2452466-CDS-F-serratus_M_contig11:1404188..1404229Fucus serratus maleCDSF-serratus_M_contig11 1404189..1404229 +
1690962646.9055288-CDS-F-serratus_M_contig11:1404188..14042291690962646.9055288-CDS-F-serratus_M_contig11:1404188..1404229Fucus serratus maleCDSF-serratus_M_contig11 1404189..1404229 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.2619712-UTR-F-serratus_M_contig11:1404229..14042721622928960.2619712-UTR-F-serratus_M_contig11:1404229..1404272Fucus serratus maleUTRF-serratus_M_contig11 1404230..1404272 +
1690962646.9150105-UTR-F-serratus_M_contig11:1404229..14042721690962646.9150105-UTR-F-serratus_M_contig11:1404229..1404272Fucus serratus maleUTRF-serratus_M_contig11 1404230..1404272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig11.932.1

>prot_F-serratus_M_contig11.932.1 ID=prot_F-serratus_M_contig11.932.1|Name=mRNA_F-serratus_M_contig11.932.1|organism=Fucus serratus male|type=polypeptide|length=41bp
EHRGREIRSGCDAQTSVRLLLCATPIISDDFSVQAERPET*
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mRNA from alignment at F-serratus_M_contig11:1403219..1404272+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig11.932.1 ID=mRNA_F-serratus_M_contig11.932.1|Name=mRNA_F-serratus_M_contig11.932.1|organism=Fucus serratus male|type=mRNA|length=1054bp|location=Sequence derived from alignment at F-serratus_M_contig11:1403219..1404272+ (Fucus serratus male)
GAGCACCGAGGGAGAGAGATCAGGAGTGGATGCGACGCCCAGACGAGCGT
GAGACTCCTCCTGTGCGCAACACCAATAATAAGTAAGCGATGGCTTCTTT
CTATGATTTGAAGAGAATGGGATATGCAGAGACGAGCAAAGAAATATGTG
ATGCTCTTCGCCATGTCTTAAATGTATTGAAAGAATACCACGATCAAGAC
GCAATATATGATATCATGCTGGAGACGGATGCGGAACGGATGCGCCGACA
TAAATCAAACGAGATCGCAGAAGTTGTTGCTGCTCATCGCCTGGATAAGA
TGAAGACTTTCCTCGCAGACCATGAGCTAACATCCTGGCGCAGGGAAAAC
GGTTTCGATCTCCAGCCAGTAGTGCTCGGTAAACCCCCCCCTACACGCGC
AGAGGACAATGCATGTCTTCGGCTTGAACTACTGAAGTTGCAAGGTGCAC
TTTCAGCATCAGCAAAAATTCCCGTTTCGCAGCCAGATGTGCGTATTATT
TTGAAGGATGAAGACAGAGAGGCCAGAATGGACCTGGGGCTAGAACAAGA
GCCCAAACCATCACCATCAGCTGACCCGGACAGCGAAACAACCGGACAAC
GGAGTACCCCGCAAGGGGGAAATTGGGAGGCTGGACTGAGGATTGCCGGC
GGCAGCATGCTCGCCGACATGAGGTCCAAACAAGGGTCAGATGAAAACCC
GGAACGCGAGACGGTTCCGGAGGAATCAAACATCGCCGCTCACGAGGAAG
CGGCAATCGATCAACATCGGCGAGGGACAATAGCGAGCCAAGAGAATAAA
CAGTACGACCCCGGGGGCCAAGAAGAGGGCTTGCTGCCTTGTAAAAGCAG
CCTGTACGAGTCATCTTTCTTTTTCATCTGGGGGAACTGGGAGCATCGTC
TACCTGTGTTCTGTTTCTGTTTCTCGTTTTCGTGTGTTCCCGTATTTTTC
CCAAATTCATTTTTCCACAGGTGATGATTTTTCAGTCCAAGCTGAAAGAC
CTGAGACATAACGGATAAAGACAAGAAGAACAAGGCGCTGATGTGCGCGA
CCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig11:1403219..1404272+

>mRNA_F-serratus_M_contig11.932.1 ID=mRNA_F-serratus_M_contig11.932.1|Name=mRNA_F-serratus_M_contig11.932.1|organism=Fucus serratus male|type=CDS|length=246bp|location=Sequence derived from alignment at F-serratus_M_contig11:1403219..1404272+ (Fucus serratus male)
GAGCACCGAGGGAGAGAGATCAGGAGTGGATGCGACGCCCAGACGAGCGT
GAGACTCCTCCTGTGCGCAACACCAATAATAAGAGCACCGAGGGAGAGAG
ATCAGGAGTGGATGCGACGCCCAGACGAGCGTGAGACTCCTCCTGTGCGC
AACACCAATAATAAGTGATGATTTTTCAGTCCAAGCTGAAAGACCTGAGA
CATAAGTGATGATTTTTCAGTCCAAGCTGAAAGACCTGAGACATAA
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