mRNA_F-serratus_M_contig11.917.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig11.917.1
Unique NamemRNA_F-serratus_M_contig11.917.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig11.917.1 vs. uniprot
Match: A0A6H5L2X6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2X6_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.090e-25
Identity = 63/127 (49.61%), Postives = 80/127 (62.99%), Query Frame = 2 
Query:   14 ASHEHLRRRRLLDGLGAWRTVAARKALRRAASSAARDWASKNLALRTFAAWRATADLQAARRAVFHARISTAAGVLAGGKLRRALDRWREFHGSSRVALITRLRAEGHARRKILGKFWRAWVAARDV 394
            AS +H+ RR L  G+  WR  AA  A RR A   A D                    +AAR+AVF ARI++A  ++A G+LRR+  RW+EFHGSS+VA +TRLRAEGHARRK+LGKFW AWVA  ++
Sbjct:  496 ASRKHVDRRLLASGVRVWRVAAAAMASRRYAKRVAMD--------------------KAARKAVFRARITSATTIVAAGRLRRSFARWQEFHGSSQVATVTRLRAEGHARRKVLGKFWAAWVAVGEL 602
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig11.917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2X6_9PHAE1.090e-2549.61Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig11contigF-serratus_M_contig11:732189..733707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_000920.2
Exons3
Model size397
Cds size396
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig11.917.1prot_F-serratus_M_contig11.917.1Fucus serratus malepolypeptideF-serratus_M_contig11 732189..733706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928959.7158458-CDS-F-serratus_M_contig11:732188..7322241622928959.7158458-CDS-F-serratus_M_contig11:732188..732224Fucus serratus maleCDSF-serratus_M_contig11 732189..732224 +
1690962646.726693-CDS-F-serratus_M_contig11:732188..7322241690962646.726693-CDS-F-serratus_M_contig11:732188..732224Fucus serratus maleCDSF-serratus_M_contig11 732189..732224 +
1622928959.7290294-CDS-F-serratus_M_contig11:732501..7325921622928959.7290294-CDS-F-serratus_M_contig11:732501..732592Fucus serratus maleCDSF-serratus_M_contig11 732502..732592 +
1690962646.7393274-CDS-F-serratus_M_contig11:732501..7325921690962646.7393274-CDS-F-serratus_M_contig11:732501..732592Fucus serratus maleCDSF-serratus_M_contig11 732502..732592 +
1622928959.7612112-CDS-F-serratus_M_contig11:733437..7337061622928959.7612112-CDS-F-serratus_M_contig11:733437..733706Fucus serratus maleCDSF-serratus_M_contig11 733438..733706 +
1690962646.7525737-CDS-F-serratus_M_contig11:733437..7337061690962646.7525737-CDS-F-serratus_M_contig11:733437..733706Fucus serratus maleCDSF-serratus_M_contig11 733438..733706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig11.917.1

>prot_F-serratus_M_contig11.917.1 ID=prot_F-serratus_M_contig11.917.1|Name=mRNA_F-serratus_M_contig11.917.1|organism=Fucus serratus male|type=polypeptide|length=132bp
GERKGFPRALAEEAPIGWSWGVENRGSAQGLTAGSIECGERLGFEKPRSQ
DVRGVAGDSGLAGGAQGGLPRQDFDRGRRSRGRKASPCSRPLARVPRLVA
SRAHHAPPRRRARSSKDSGKVLACLGGGPGCP
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mRNA from alignment at F-serratus_M_contig11:732189..733707+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig11.917.1 ID=mRNA_F-serratus_M_contig11.917.1|Name=mRNA_F-serratus_M_contig11.917.1|organism=Fucus serratus male|type=mRNA|length=1519bp|location=Sequence derived from alignment at F-serratus_M_contig11:732189..733707+ (Fucus serratus male)
GGAGAACGTAAAGGCTTCCCACGAGCACTTGCGGAGGTGGGTCGGTCTTC
TCGGTGCGAGACTGAACCTGTCTTAAACCCGCCTCCCTCCCTCTCGACGA
AAAACTCACCGCCCGCATAAAAGCCAGAAAATGCGTTTGGTCTACGCACC
CGCGCGTTTTTCTTCAGACGCCGTTTCTCCCCGACCCGTTCGCGCCAAGG
AGCGAGCGGGCTGGCGTGAAGAGCACACACATTTTTTTGTCGCTTTTTTT
TTTTTTTTCTTCCCAAAGAGGCTCTCTCCCAGCTGTACGCGTCAAACGTC
CCACGTTCCGCAGGAGGCGCCTATTGGATGGTCTTGGGGCGTGGAGAACC
GTGGCAGCGCGCAAGGCCTTACGGCGGGCAGCATCGAGTGCGGCGAGAGA
TTGGGTATGGAGTTTCCCACCTTGATAGGTTTTCGGTTCAGAGAGGGTAA
GGGAGTTCCACACAATTCCTCCGGCGGACGGGCAAGAAGAGTTCCACCTT
TTTAAAAGATCTGGGCGGAAAAGCAATGGAGATTGGAGAGAGGGGAAGGT
TGACCCGAAACTCCGCATGGTTTTGAGGGAGGAGTTCGAAATATCTTCGG
GCAAAGGAATGAGCGGGGTGGTCGGGATAAGAGTATGGGGCTCGCTTCAA
GACTCGCACGATCGTGTTTCATAGGTTCGAGACCGCTAGCGTATGAAGGA
AAAAGGAGAACTATTGTGTGTTCTGGTCTAGTTTTTACGGGTAGCGAGAG
ACGAGCGGAAATAATCGGGCGCGATCTGCCGTTGCGATGTCGGCGGTCAA
CAAAACAGTTAACAACGTATAAGCATGCATTCATAACAGATGGCACTTAT
TCGATGTCGCGATTCCTGCGCAAAACGTCCTTGTCGTAGGCCAGCATCTC
CGTAGATGCCCGCCCCCCGCCTATGCATCCCCCCTCCCCCCTCCTGCTTC
TGGCGGTTCTCTATTGTTTCTTATAACTTTTTTTAAGATGGAAATTTATT
TAGCTTTACCTCTGTTCAGACGAGAGAAAAATTACGTGTGAAAGCTTGCC
CCTACCTTGTCCATGCTGACTTCCGTCCTCGGAACTTCTCGAAGCGTATC
TAGTAAAATGAGCGAGGTATACAGTCACGTCAAGACTTTTCCGTATGAAA
CCCCGAAAGCCTTGCTCTATCGTCAATGCTTATCACGCTCGCTCCACGGT
GCTCCTTCTGTGTTCTTCCTCGCTCCCCCCTCATTCTTGGCCTCCGCAGG
CTTCGAAAAACCTCGCTCTCAGGACGTTCGCGGCGTGGCGGGCGACAGCG
GACTTGCAGGCGGCGCGCAGGGCGGTCTTCCACGCCAGGATTTCGACCGC
GGCAGGCGTTCTCGCGGGAGGAAAGCTTCGCCGTGCTCTCGACCGTTGGC
GCGAGTTCCACGGCTCGTCGCGAGTCGCGCTCATCACGCGCCTCCGCGCC
GAAGGGCACGCTCGTCGAAAGATTCTGGGAAAGTTCTGGCGTGCCTGGGT
GGCGGCCCGGGATGTCCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig11:732189..733707+

>mRNA_F-serratus_M_contig11.917.1 ID=mRNA_F-serratus_M_contig11.917.1|Name=mRNA_F-serratus_M_contig11.917.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig11:732189..733707+ (Fucus serratus male)
GGAGAACGTAAAGGCTTCCCACGAGCACTTGCGGAGGGAGAACGTAAAGG
CTTCCCACGAGCACTTGCGGAGGAGGCGCCTATTGGATGGTCTTGGGGCG
TGGAGAACCGTGGCAGCGCGCAAGGCCTTACGGCGGGCAGCATCGAGTGC
GGCGAGAGATTGGGAGGCGCCTATTGGATGGTCTTGGGGCGTGGAGAACC
GTGGCAGCGCGCAAGGCCTTACGGCGGGCAGCATCGAGTGCGGCGAGAGA
TTGGGCTTCGAAAAACCTCGCTCTCAGGACGTTCGCGGCGTGGCGGGCGA
CAGCGGACTTGCAGGCGGCGCGCAGGGCGGTCTTCCACGCCAGGATTTCG
ACCGCGGCAGGCGTTCTCGCGGGAGGAAAGCTTCGCCGTGCTCTCGACCG
TTGGCGCGAGTTCCACGGCTCGTCGCGAGTCGCGCTCATCACGCGCCTCC
GCGCCGAAGGGCACGCTCGTCGAAAGATTCTGGGAAAGTTCTGGCGTGCC
TGGGTGGCGGCCCGGGATGTCCAGCTTCGAAAAACCTCGCTCTCAGGACG
TTCGCGGCGTGGCGGGCGACAGCGGACTTGCAGGCGGCGCGCAGGGCGGT
CTTCCACGCCAGGATTTCGACCGCGGCAGGCGTTCTCGCGGGAGGAAAGC
TTCGCCGTGCTCTCGACCGTTGGCGCGAGTTCCACGGCTCGTCGCGAGTC
GCGCTCATCACGCGCCTCCGCGCCGAAGGGCACGCTCGTCGAAAGATTCT
GGGAAAGTTCTGGCGTGCCTGGGTGGCGGCCCGGGATGTCCA
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