mRNA_F-serratus_M_contig108.757.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI) HSP 1 Score: 126 bits (316), Expect = 1.080e-25 Identity = 64/98 (65.31%), Postives = 76/98 (77.55%), Query Frame = 1 Query: 391 ATVFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAIIFQVYFGIQ 684 A VFV P+TA Q AGA +FAFV LL FEL+RPH+S D+WMYRIG I IFFSNFLGLM KADVS E+ QSQE + +LLI VHV+M +AI+ Q Y +Q Sbjct: 1572 ALVFVLPNTAGQAAGASVFAFVGLLGFELLRPHLSHTDAWMYRIGCITIFFSNFLGLMAKADVSDEEAQSQEAYGLLLIAVHVLMVLAILAQAYVSMQ 1669
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 107 bits (268), Expect = 4.980e-20 Identity = 48/104 (46.15%), Postives = 74/104 (71.15%), Query Frame = 1 Query: 391 ATVFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAIIFQVYFGIQLQREES 702 A +F+APHT Q A ACMFAF SLL FEL+RPH+ ADSW+YR+G ++IF SNFL L++KAD +GE +S + +++ +++ + +A++F +F Q ++S Sbjct: 1447 ALIFIAPHTVAQAAIACMFAFASLLGFELLRPHLDPADSWLYRLGCVVIFLSNFLALLIKADTAGEGSRS--VLGGIMVAINIFLILAVLFSTWFATQQSVDDS 1548
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE) HSP 1 Score: 106 bits (264), Expect = 1.260e-19 Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 1 Query: 391 ATVFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAIIFQVYFGIQ 684 A +F+APHTA Q A ACMFAF SLL FEL+RPH+ ADSW+YR+G + IF SNFL L+ K D +GE +S + +LI V+V++ VA++ +F Q Sbjct: 901 ALIFIAPHTAAQAAMACMFAFASLLGFELLRPHLDPADSWLYRLGCVTIFLSNFLALLTKVDAAGESNRS--ILGGILIAVNVLLVVAVLASTWFATQ 996
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 102 bits (254), Expect = 2.250e-18 Identity = 48/101 (47.52%), Postives = 74/101 (73.27%), Query Frame = 1 Query: 397 VFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAIIFQVYFGIQLQREE 699 VF++P+TA Q+A ACMFAFVSLL FEL+RPH+ DSW+YR+G + IF SNFL L++K D SG D + ++F ++IG+++ + +A++ +F +Q +E Sbjct: 1369 VFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCLCIFLSNFLALLIKVD-SGVDG-NHDVFGAIMIGINMFLIMAVLLASWFSMQQTMDE 1467
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 101 bits (251), Expect = 5.110e-18 Identity = 45/103 (43.69%), Postives = 76/103 (73.79%), Query Frame = 1 Query: 397 VFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAIIFQVYFGIQLQREESA 705 +F++P+TA Q+A ACMFAFVSLL FEL+RPH+ DSW+YR+G + IF SNFL L++K D +G+ ++++F ++I +++++ +A++ +F +Q +E A Sbjct: 1359 IFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCMCIFLSNFLALLIKVDSAGDS--NRDVFGWIMIVINLLLIMAVLLASWFSMQQTMDEYA 1459
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: D7G0A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A6_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 5.850e-16 Identity = 43/87 (49.43%), Postives = 64/87 (73.56%), Query Frame = 1 Query: 397 VFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAI 657 VFV P T Q+A C+FAF+SLL FE +RPHI D +YR G ++IFF+NFL LM+KA+V+ D + +++S++LI V+V+ F++I Sbjct: 11 VFVVPDTPGQVAFGCVFAFLSLLAFERLRPHIDHLDMELYRTGCLVIFFTNFLALMIKANVASPDSRGCKVYSIVLIIVNVLFFLSI 97
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 2.080e-15 Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 1 Query: 397 VFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAIIFQVYFGIQ 684 +F A TA Q A AC+FAFVSLL FEL+RPH+ AD+W+YR+G ++IF SNFL L++K D +GE ++ +LI V+V + +A++ +F Q Sbjct: 1398 IFFAAGTAAQAAMACIFAFVSLLGFELLRPHLDPADAWLYRLGCVIIFLSNFLALLIKVDAAGEGNRAA--LGGILIAVNVFLILAVLSTSWFATQ 1491
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 2.170e-15 Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 1 Query: 397 VFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAI 657 VF+ P T Q+A C+FAF+SLL FEL+RPH D +YR G ++IFF+NFL LM+KA+V+ D + E++SV+LI V+V+ F++I Sbjct: 1561 VFLVPDTPGQVAFGCVFAFLSLLAFELLRPHTDHLDMQLYRTGCLVIFFTNFLALMIKANVASPDSRGSEVYSVVLIIVNVLFFLSI 1647
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 3.280e-15 Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 397 VFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAIIFQVYFGIQ 684 +F A TA Q A AC+FAFVSLL FEL+RPH+ AD W+YR+G ++IF SNFL L++K D +GE ++ +LI V+V + +A++ +F Q Sbjct: 1056 IFFAAGTAAQAAMACIFAFVSLLGFELLRPHLDPADMWLYRLGCVIIFLSNFLALLIKVDAAGEGNRAA--LGGILIAVNVFLILAVLSTSWFATQ 1149
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 5.040e-15 Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 1 Query: 397 VFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAI 657 VFV P T Q+A C+FAF+SLL FEL+RPH D +YR G ++IFF+NFL LM+KA+V+ D + ++SV+LI V+V+ F++I Sbjct: 1767 VFVVPDTPGQVAFGCVFAFLSLLAFELLRPHTDHLDMQLYRTGCLVIFFTNFLALMIKANVANPDSRGSAVYSVVLIIVNVLFFLSI 1853 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig108.757.1 >prot_F-serratus_M_contig108.757.1 ID=prot_F-serratus_M_contig108.757.1|Name=mRNA_F-serratus_M_contig108.757.1|organism=Fucus serratus male|type=polypeptide|length=183bp MRPTLSPDGSPSLATVFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQAback to top mRNA from alignment at F-serratus_M_contig108:305678..311332+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig108.757.1 ID=mRNA_F-serratus_M_contig108.757.1|Name=mRNA_F-serratus_M_contig108.757.1|organism=Fucus serratus male|type=mRNA|length=5655bp|location=Sequence derived from alignment at F-serratus_M_contig108:305678..311332+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig108:305678..311332+ >mRNA_F-serratus_M_contig108.757.1 ID=mRNA_F-serratus_M_contig108.757.1|Name=mRNA_F-serratus_M_contig108.757.1|organism=Fucus serratus male|type=CDS|length=1098bp|location=Sequence derived from alignment at F-serratus_M_contig108:305678..311332+ (Fucus serratus male)back to top |