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Homology
BLAST of mRNA_F-serratus_M_contig1071.698.1 vs. uniprot
Match: D7G4A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A6_ECTSI) HSP 1 Score: 66.6 bits (161), Expect = 1.370e-9 Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = 1
Query: 304 GRAKSRQLENVVSARDFIDELSTEVEELENLVEETARSLGREAAQNQHAKLGKRLGKRVTDVLLHLDRVTGDDQVRTARRKQVDKALALGERVGNAI 594
G K R L N+ S R+F+D LS EV +LE + A + + A+ ++ + + + VT VL HLD+ TG D++ AR+KQ+ +A LG R+ +
Sbjct: 35 GGTKRRMLGNIASGREFLDALSAEVADLEATIALAAEASDLDTARKENERKSREHDEHVTQVLTHLDKCTGGDEIGVARKKQIHRAEVLGLRISKIL 131
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal anchor |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-02_001960.1 |
Exons | 4 |
Model size | 1476 |
Cds size | 507 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928917.5264246-UTR-F-serratus_M_contig1071:234583..234688 | 1622928917.5264246-UTR-F-serratus_M_contig1071:234583..234688 | Fucus serratus male | UTR | F-serratus_M_contig1071 234584..234688 + |
1690962628.7317495-UTR-F-serratus_M_contig1071:234583..234688 | 1690962628.7317495-UTR-F-serratus_M_contig1071:234583..234688 | Fucus serratus male | UTR | F-serratus_M_contig1071 234584..234688 + |
1622928917.5864258-UTR-F-serratus_M_contig1071:240617..241481 | 1622928917.5864258-UTR-F-serratus_M_contig1071:240617..241481 | Fucus serratus male | UTR | F-serratus_M_contig1071 240618..241481 + |
1690962628.7831805-UTR-F-serratus_M_contig1071:240617..241481 | 1690962628.7831805-UTR-F-serratus_M_contig1071:240617..241481 | Fucus serratus male | UTR | F-serratus_M_contig1071 240618..241481 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928917.5416758-CDS-F-serratus_M_contig1071:234688..234913 | 1622928917.5416758-CDS-F-serratus_M_contig1071:234688..234913 | Fucus serratus male | CDS | F-serratus_M_contig1071 234689..234913 + |
1690962628.7442021-CDS-F-serratus_M_contig1071:234688..234913 | 1690962628.7442021-CDS-F-serratus_M_contig1071:234688..234913 | Fucus serratus male | CDS | F-serratus_M_contig1071 234689..234913 + |
1622928917.552322-CDS-F-serratus_M_contig1071:239128..239242 | 1622928917.552322-CDS-F-serratus_M_contig1071:239128..239242 | Fucus serratus male | CDS | F-serratus_M_contig1071 239129..239242 + |
1690962628.753896-CDS-F-serratus_M_contig1071:239128..239242 | 1690962628.753896-CDS-F-serratus_M_contig1071:239128..239242 | Fucus serratus male | CDS | F-serratus_M_contig1071 239129..239242 + |
1622928917.5621347-CDS-F-serratus_M_contig1071:239979..240084 | 1622928917.5621347-CDS-F-serratus_M_contig1071:239979..240084 | Fucus serratus male | CDS | F-serratus_M_contig1071 239980..240084 + |
1690962628.7629457-CDS-F-serratus_M_contig1071:239979..240084 | 1690962628.7629457-CDS-F-serratus_M_contig1071:239979..240084 | Fucus serratus male | CDS | F-serratus_M_contig1071 239980..240084 + |
1622928917.5738633-CDS-F-serratus_M_contig1071:240554..240617 | 1622928917.5738633-CDS-F-serratus_M_contig1071:240554..240617 | Fucus serratus male | CDS | F-serratus_M_contig1071 240555..240617 + |
1690962628.7735214-CDS-F-serratus_M_contig1071:240554..240617 | 1690962628.7735214-CDS-F-serratus_M_contig1071:240554..240617 | Fucus serratus male | CDS | F-serratus_M_contig1071 240555..240617 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1071.698.1 >prot_F-serratus_M_contig1071.698.1 ID=prot_F-serratus_M_contig1071.698.1|Name=mRNA_F-serratus_M_contig1071.698.1|organism=Fucus serratus male|type=polypeptide|length=169bp
MPSKIYLVGSDQTTKSSNHARRLSLRTGTRLAIAAAGATLVFMIGSTGGW EYAKRMFRVMWDGDQEGRAKSRQLENVVSARDFIDELSTEVEELENLVEE TARSLGREAAQNQHAKLGKRLGKRVTDVLLHLDRVTGDDQVRTARRKQVD KALALGERVGNAIGENVA* back to topmRNA from alignment at F-serratus_M_contig1071:234584..241481+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1071.698.1 ID=mRNA_F-serratus_M_contig1071.698.1|Name=mRNA_F-serratus_M_contig1071.698.1|organism=Fucus serratus male|type=mRNA|length=6898bp|location=Sequence derived from alignment at F-serratus_M_contig1071:234584..241481+ (Fucus serratus male) CTTGAGTCGATAAACCCTTGCGTCGCTGGCAAGGGAAAGGTTTCTCTCTG
CGAAGAGTGACACTTCTAGAGTATATACCCTTTTTACTGTTTCCCTGGCC
ACGGGATGCCTTCCAAAATCTACCTTGTAGGATCGGATCAGACGACGAAG
TCCTCAAATCATGCGCGAAGGTTATCCCTTCGAACCGGGACCCGCCTGGC
GATCGCAGCGGCGGGGGCAACGCTTGTCTTCATGATTGGGTCCACAGGTG
GTTGGGAGTACGCAAAAAGAATGTTTCGAGTTATGTGGGATGGTGATCAG
GAGGGACGTGCGAAGTCGAGACAGCTTGAGGTAAGACGACGCACAAGACG
CGTTTACAGGGGAACTGTGTGTGCTCCACTCTTCAATTAGTACCTGGTAC
TGGTACGTACTAAAGTCTGAAAGTACCAGTACCAGTTTATGTAACCGCCG
GTACTTTCAATATGCCCACTTCATACCAGTAGTGGGCGTGCCAAAGAGAG
GCGCATATTCATTGTTCGATGGTGATGCAAAGGCAGCACCCGTTGCTGGA
ATTACCTGTAGGTTTACTGGCCCTGTGCCGGCGGATTCTCGGCAGTGAGT
GCCATCGGTACGCAATTGCGTTACACGATAAACTCGAGACTGACCCGATA
ACATATGGCGGTTTAAATAGATACGAGTATATAGACGCCCCGCGGAACTC
GGGAGGAATCCCGTCTAAGCAACAGATTCAGCCTGAGTATGGAGATGAGC
AGGCTGACGCGGGATGGGACTGCCGAAACCGTCTCGCGAGACCAAACTCT
CAGGCGCGAACGGGGACAGGAAAATATTTATTTTCCTTGTTCAGTTCAGC
CGCTCGTCGCCCGAGTGGTCTATTATATTAATAGTAGGTAACCTGCACAC
CTGCTATTAATTATTAATAGTGCGGAGGTCGTGAGTTCGATTCTCGGTTA
AATCATAATTTTAATTCTTGCTTCCGTGAGTAGGTAAAATTCAACCATTG
GTTGACGAGTTGTAAGAGTGCTGAACATGCCATCGCGATAAAAAGTCGTA
AGGGTGAACCAGGGAGAGATGGGAAGATCCTTAGTGGCCACAGGCAGGAT
GGAATGAGGCCCATCGGCTATAAGCGAGATGAAAGAAAAAGAAAAAAACT
GACCATGAGCAGGATTGGCAACCTTACCCGGTTGATCCTTACTCTTGCTA
TTTTGATTTTGATTAATTAAATTCTCACATAAACTGATGTAAAAACACTC
AGCCCGTGGCCACAAGGTAGTAAAACACCATCCGGAAGGAAGGGAAACAC
GCACGACGTACTCTCCATACTATTAATAAGAGAAAACGGCAATGGTACAA
AAAAAACTCTGAGGAAGCGACATCCTAAAAAAAAAAAAAAGGAAAAAAGG
AAGAAACACGTGTGTGGCTGTCGGGGCGCCTGGATATCGAAGAACGATTG
AACGATTGAACGAAACGCCGCGGCTGCAATGAAAGTATAAAGATGAAAAC
GAAACGAAACAAAACGAACCTAACACTATTAATAGAGAAAGGCGTCATGA
CATCTGCAAACCAAACGCCCGGAGGATACAAGTTCGCGCCCCCTTGTGGC
TATTATAGTCAACAATGGCGAGCGAACCAGCACGAATCCGCTGGCTTTGG
GCTATCCCCTCCTTGGTCCTTCCCGTCACGTTCGGGCATACCACTGCATG
CCGTAGTCCAGTCACGGCTTTCGCAGCAGCGATCCATTTCACCATGAAAT
ATTCCGCTCCCTGTTCCGCCGTCCTGCGCCATTTCCCCTCGTCCTGGGCT
GCAGTCGTCCACTGGTCGGCGTCGATGCCGAAAGCTCTGAGGTCGTCCAT
GAACACACCCCATCCACTCTTTTTGCTGTCCGCCCACACAGCCCACGCCC
CCCACCAATGCTCCGAACATCACGCACTTCGGCATGCAGGGACACCAGAC
AAAACAAACGATGAGCTTGGATTACAGCTCATTAATCCAATCGGATGGGT
GTCGATACAAAAAACATTCAAGTCATGGATGTAGAAAATAATGATAGTGG
AAAATTGTCTTACAGTCAGTATAACTATTCCTACGGTAGACTACATACTT
ACAAGTAGGAATCATGGTGCACAAATTGAGGAAATTTGTATTATAAGATT
AGCGAAGAGTGGTTCAACAGTTAATCTTATTATTATTATTATTATTATTA
TTTCCGCACATAAGTCCGATCTCTCGAGCCCGTGGTCACAGATGCAGGCT
TCCCTTTCCATACCATCGCTACATACAAAAAACAAATAAAATAAGAGAAA
GAGAGGAAAAAAAAAACAATAACAGACGAGAAAGCCCCCCCCTTGATCTG
ATCGGAGGGGAGGGGGAAGAAATAAAATAAAATAAGACAACATGTATATA
CCCGCCGCGCATATCCGAGAGACAAATAGATAAGCAAGACATACCAAGTG
TCAAGACCACACGAATGCCGGAACCGTACGCGAGTCGCTAAGCACACCCC
CCACTCACCCGCTACTCTTCTGCGGCATTTAAATCGACATCATGGGAGCT
CAAACGGCAAAGTAGCGAAAAGTTCCCTTGCGTGGCGGGCGTTGGTCTCG
TTCACACGCTTGGTGGACCAGGCCGACATGAAGACTTCAGCCCCCGTCTC
TACTTTGCGGTACCATTCAGGTGCATCTTGGGCGGCCCTCATCCAACACT
TGGGGTCGATCCCGAAGGCAGTGCAGTATTCCGTGACACGATGTTCGAGG
CGTTTCGCAAGCTGACCCCGTTTTCTCTTCCCCCCGACCATTCTATATTT
GATATTTTTCTATATTTGATCTTTTTCACCGTGTTTTCTATTCGATCCAT
GTTTTTAGTTCACACTATATATCTTAATGTATTACATTTGTGACAGCAGT
TGCAGCAGTAGTATGTGTATAGTACCGAGCATCATCAGCATTACTGAGTA
CAGTATAGTATTTATAGAGCTTAGCTTGTACCTGGTACGTTTTTCCCTTC
CGGATGGTGTTTTTACATCATTTTCTATCATACCTTGTGACCACGGGCTC
GGTTTTTTTACATGAGCTTACGTGAGAGTTCGATCAGCACTACTATAGAA
TGCATTATGTATGTATGGTCATGACATATAGCAAGAGTATGGATCGACCG
GGCAAGGTTTGCCAATCCTGCTCATGGTCAGAGCTGAACAGGAAAAATGT
TTTTTTTTGCCTTGTCCCTGTTCGCGCATGAAAATTCGGTCTCGCGAGAT
GGGTTCGGCAGTCCCGTCCCACGTCAGCCTGCTCATCTCCGTGCTCAGGC
TGAATCTGATGCTTACTTGTAGATTGTTTTGTTGGCGCCATGTTAGTCCA
TGGGATCTTTACCACTGCCGTACTACTACCACTACCACCAATATAATGAT
ACTATAATAGTGTAATAGTGTGATACTGCCATACTGTCTGTACCGCTGAA
AGCCAAGTACGTCACCGTTGCCGTACGCCACGGGCGCAGGTCTCGTTCCC
CACGACCCTGCTCGTACGCTATTGAACGACCGATTACTAACTGTGCTTAC
GCTATCTCGAAAAAAAAAAAGAAGCTTGGGAGTCCATCAAGCACCCATCT
GAACGTCGCCATCGTTTTTCTGTCTTTTTAAATTCCCTTCTTCTTCAGAG
GCAGAGCAGGTCATCGTCCAACACACTGAAGGTTGGAAAAACCACAACAA
ATCACAGATAATAGATACGTGTACCAGTACAAACCTGGTGGAACTAGAGA
TCCCGCGGGGAATCGGTAGGGCTTTGTCACCCACGACCGACTTCATCACG
TTGGCGGGGTCACATTCATAGGTGTACCTCGTCTCTCTATGGCATCGATA
CTCGTTTTTTAACCGCGAATTTTCGCTCTGGAACTACACTGGCGTGCACT
GTCGACCAGCTTTGAAGTTAGCCCTCAGCTGCTTTTCTCAACTCTGCTCT
TGGCCGGTCGTGAGCGTCAAACCATTAGTACCGTGTAGCACGTGTGTTCC
CAGGAGGGCTAGGATTCGCGTCTTCAATCAAGTGAAGGCTACGACGTGAA
TCGTGCTTCTTACGGTGCAAAGCTCTTGACGCGAAGATCCGCCCCCCCCT
AAAACGTCGAGTTTTGGCGTTACGCGTCCGCGTTGTCAAAAGAGGCGTGC
GCTTTTTTGCAGCAAGTGACACATTTCCGTAGGCCGAACAACCTAAATTC
ATCAGTGCCCGACCAGAATGGCTAGCACCGTAGGAAACAAGTATGACACG
TTAGAACCGCCTATAGAAACAGCGATTCGCTGGTTGTTTTTACTCCAACA
GTGACCGGTGGTAACCCATGTTGGCACGTTGATTCACGTACGAGGAGCTT
TGGCACGGAAGCCATTTCCCAAAATCACACTGGTAGGGGCATTTGCCTCC
CTGGACTTGACACTTTAAAAATAAATGTGGTTTTGTGAAAAAAAAGTACG
GCTGGCTCTTTATTCTCTCTCCCACGGCGCGAATTCGGTCATGGCTGACT
CACGAAGTCCCATCACCCTGCGCGGGCGCCGATGCTGACGCACAGAACGT
TGTCAGCGCTCGCGACTTCATCGACGAGCTGTCGACGGAGGTGGAGGAGT
TGGAGAACCTCGTTGAGGAGACCGCTCGCTCTCTCGGGAGAGAAGCTGCT
CAAAACCAGGTGCGATTCGTAGCGACATGTGTGTGAAAAAAAGGAACGAG
GCGCTCAACGTCGAAGTCAAAGCTAATTTTTTCCCTCAATACAAGTAATT
CCCGACCTAATGTTCGTGAAATCATTTTTTCCCGCCGACGGTCGTTTTCG
TGTACCGATTAGACTGGCTCGCACGGCCGCGGCAGTCATGGACAGGCCCT
CTGGCAGTTTCCTCCCGAATGTCCTCAAATTGACCCTTCGCCCGATACTC
CCATTTACAGCCAAGATCACATTGTCAATAATAGGCGGAACACACACGAA
ATCAATCCCTGATGGTGTCATATTTTTCGAGGGGATATTTCCGTAACACC
CCCCCCCCCCCTCCCGGCCGCCGCCCCCTCCCTTTCAACAACCATCAAGA
CTCATAACAGGGGATTCAGTAGAATAAGGCGACTTTGAACTTAAACTCAG
ATACGTCGAGTGCGCTTGACTTGACATCAAGGTTTTGTCCGATAAGAAGA
CTGGGATTTGTCTCCCCGAGGTCCTTGAAAGAAGGTTTTCGGTGATCGAG
CGTCGGTTGTTTTGATGCGTTTCACCTACGGTGATGCGAAGTTCGGCCGT
ATCGTGTGCTGGCACCGTCGTTTCGCCCTTTTCTCGACACGTGCGTTGGA
CTAAGCCCCACCTGTTTTCGACGAGACCTGTTCCGAGCCCGCGCCCGAGA
AAATATCGCCCTTGCCTCCCTTGCCTCTCTTGCCTCACCCTTCCAGCACG
CGAAGCTCGGCAAGCGCTTGGGCAAGCGTGTGACGGACGTGCTTCTGCAC
CTGGACAGGGTGACCGGCGATGATCAAGTTCGCACCGCGAGGAGGAAGCA
GGTGCCTTTAGATGTCATTTGCCGGGATTTTTTAGCTTGCAATCGGCCTT
GGCTGCTGTGTCGGGGAAGCGCAAGCTTTTGCCGTGTGTTGTAAAGGGGG
GAATAGTGCGAAGGGAATGTGCGACTTGATACACTTTGGATGGGCGACTT
GATGCACTTTACAGCAATCTCGAGAGAGCACAAAATGGAGAACTTTGAAG
AAAGAAAAATGAGCTGTCATGCTACTATTATTAGTATGTATATAGACCGA
CGTATATGAAGAGATATTTAGGACCAAGATAAGCTCTCCAGAATACATCT
ACATCCGATGTTTTGTCGCCCGGAGTGTTTCTGGACGAGTAGCTCGCGGT
GGTGGGGTGCGAGCAGTCGAGGTAGGTGCGGCATTTCGGGTTCGAGTGTC
CTCGTTTCGCTGCTGCATCCTCGCAGAAAGGTACGCATCCCTTGCGTTTG
TCCCTGTCCTATGCTGTCCAGGTTGATAAAGCCCTGGCGTTGGGCGAACG
AGTTGGAAACGCGATTGGGGAGAACGTGGCATAGCTGTGACAACGGTAGA
CGACAGTCAGGTGCTCGGGATACGAGAAACCAACTTGGTGAACGCCGTCG
AAGGCGAAAAATTACGAACTCTCTTTACGGTGTAGAGCTGAGTTTTTTTA
AGATTTCAAAGGAAACCTTCTGCGTAGCGTTGGGTGCCCATAGAGGACAC
TGGTTTGAAAGATATGACTTTTCCGACAGCCACCGGTCCCTGCGGTCTTT
CTTCTGTCACATGCGTAATGGTTACCGCCTGAAAGATGTGAACGGGGCAT
TGATCTTGAGCCACGACTGCATTGAAGACAAAGAGTGTCCCTTGGTACTC
TTACACATGAGTTGGATTTTTTATCACGCCCTGACTTTGAGGTTCTTTAG
CTGTCAACCTCGGCGAGACTCCACGAATGCACGCTCTCTGTAGAAGACGA
CTCCGCAGGGCTCTTCCGCATCATCGTTTTGGGTAACACCGTTAACTCTA
TAATAGTTCTCTCCTAAGGATGCGAACACACCTAAGTTTCTTCGTGTTCG
GTCCATTTCCCCCCTCATCCGTTGACTTACCGTATTTATTTGTTGCCTGT
TCGTTCTTACCGTTGGTCTGTCTTGCTACCATACGCGTTGAACAATGTTA
ACCTACGGTATCACTCCTTCTCCACCCGTAATGGAAAGCTCTAAAATTCG
TGTCGAACTCCACATACATTTGTTAATCGCAGTGTTTGGCCCCTGGGTAC
AGGTCAGATGCCTCTGATAATTGACTTCATTTTGCGGTTTGGTACGTTTG
TTTGTATCTTTGGCTTCAATACTTAATACCAGTATCTTTTATTGTACCTT
GAACTCTAACTTGGTACTCGATATCTTTTTATATTTTATACCCTTCGG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1071:234584..241481+ >mRNA_F-serratus_M_contig1071.698.1 ID=mRNA_F-serratus_M_contig1071.698.1|Name=mRNA_F-serratus_M_contig1071.698.1|organism=Fucus serratus male|type=CDS|length=1014bp|location=Sequence derived from alignment at F-serratus_M_contig1071:234584..241481+ (Fucus serratus male) ATGCCTTCCAAAATCTACCTTGTAGGATCGGATCAGACGACGAAGTCCTC AAATCATGCGCGAAGGTTATCCCTTCGAACCGGGACCCGCCTGGCGATCG CAGCGGCGGGGGCAACGCTTGTCTTCATGATTGGGTCCACAGGTGGTTGG GAGTACGCAAAAAGAATGTTTCGAGTTATGTGGGATGGTGATCAGGAGGG ACGTGCGAAGTCGAGACAGCTTGAGATGCCTTCCAAAATCTACCTTGTAG GATCGGATCAGACGACGAAGTCCTCAAATCATGCGCGAAGGTTATCCCTT CGAACCGGGACCCGCCTGGCGATCGCAGCGGCGGGGGCAACGCTTGTCTT CATGATTGGGTCCACAGGTGGTTGGGAGTACGCAAAAAGAATGTTTCGAG TTATGTGGGATGGTGATCAGGAGGGACGTGCGAAGTCGAGACAGCTTGAG AACGTTGTCAGCGCTCGCGACTTCATCGACGAGCTGTCGACGGAGGTGGA GGAGTTGGAGAACCTCGTTGAGGAGACCGCTCGCTCTCTCGGGAGAGAAG CTGCTCAAAACCAGAACGTTGTCAGCGCTCGCGACTTCATCGACGAGCTG TCGACGGAGGTGGAGGAGTTGGAGAACCTCGTTGAGGAGACCGCTCGCTC TCTCGGGAGAGAAGCTGCTCAAAACCAGCACGCGAAGCTCGGCAAGCGCT TGGGCAAGCGTGTGACGGACGTGCTTCTGCACCTGGACAGGGTGACCGGC GATGATCAAGTTCGCACCGCGAGGAGGAAGCAGCACGCGAAGCTCGGCAA GCGCTTGGGCAAGCGTGTGACGGACGTGCTTCTGCACCTGGACAGGGTGA CCGGCGATGATCAAGTTCGCACCGCGAGGAGGAAGCAGGTTGATAAAGCC CTGGCGTTGGGCGAACGAGTTGGAAACGCGATTGGGGAGAACGTGGCATA GGTTGATAAAGCCCTGGCGTTGGGCGAACGAGTTGGAAACGCGATTGGGG AGAACGTGGCATAG back to top
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