prot_F-serratus_M_contig994.21225.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig994.21225.1
Unique Nameprot_F-serratus_M_contig994.21225.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length899
Homology
BLAST of mRNA_F-serratus_M_contig994.21225.1 vs. uniprot
Match: A0A1F3YQ32_9PROT (23S rRNA methyltransferase n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3YQ32_9PROT)

HSP 1 Score: 83.2 bits (204), Expect = 4.150e-13
Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = 0
Query:  726 EEEAFAPGRTDGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRSSAQNALANDL-AETTSFVRAEALHFARQAASEGRAWDLVVIDPPTLR--RKSNARASNAYARMAGAVSRLLRSGGMLMVVDGSGGEIFETHEEMVRDVFARSG 884
            ++  F   + D R  +R+++ G EVL+ FC TGGF++ +  GGA SA+ VD S  A+  + +NA AN   A    ++ A+   + R A S+GR++DL+V+DPP      +    A+ AY  +     +LLR GGML     SGG   +  +++V    A +G
Sbjct:  201 QKTGFYLDQRDNRNRIRELASGREVLNCFCYTGGFSIAALAGGALSAVSVDSSGPALELARRNAQANGFDAPRAEWIEADIFRYLRDARSQGRSFDLIVLDPPKFAPTERHAPAAARAYKDINLNALKLLRPGGMLATFSCSGGVSADLFQKIVAGATADAG 362          
BLAST of mRNA_F-serratus_M_contig994.21225.1 vs. uniprot
Match: A0A7W0Y322_9DELT (Class I SAM-dependent rRNA methyltransferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0Y322_9DELT)

HSP 1 Score: 80.5 bits (197), Expect = 4.330e-13
Identity = 54/143 (37.76%), Postives = 78/143 (54.55%), Query Frame = 0
Query:  717 RSSLDSAVTEEEAFAPGRTDGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRSSAQNALANDL-AETTSFVRAEALHFARQAASEGRAWDLVVIDPPTLRRKSNARAS--NAYARMAGAVSRLLRSGG 856
            R  +D    ++  F   + D R  +R+ + GLEVL+L+C TGGF++++ALGGA     VD +A A+ +  QN   + L A     V  +A  F  +AA  GR WDLV++DPP+      AR S   AY R+A A   +   GG
Sbjct:   42 RFGVDVRAGQKTGFFLDQRDNRRAIRRHAAGLEVLNLYCYTGGFSIHAALGGAARVTSVDLAAPAIAALTQNLARSGLDASGHELVCVDAFDFLARAAERGRRWDLVIVDPPSFAPNEKARQSALGAYRRLARAGLDVTAPGG 184          
BLAST of mRNA_F-serratus_M_contig994.21225.1 vs. uniprot
Match: A0A7S0X2R3_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0X2R3_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 6.220e-13
Identity = 62/172 (36.05%), Postives = 87/172 (50.58%), Query Frame = 0
Query:  726 EEEAFAPGRTDGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRSSAQNALANDLAETTSFVRAEALHFARQAASEGRAWDLVVIDPPTL--RRKSNARASNAYARMAGAVSRLLRSGGMLMVVDGSGGEIFETHEEMVRDVFARSGEGCGSQFDVAR 895
            ++  F   + D RA V  + +G  VLDL C +GGFAL +A  GAR  +GVD S  A+  +  NA  N L +  SFV+A+   + R+A   GRA+D+VV+DPP L   R +  RA   Y R+     +L+  GG+L     SG               ++SGE      D AR
Sbjct:  415 QKTGFYADQRDTRAYVAALCKGRSVLDLCCYSGGFALAAARAGAREVVGVDSSGPALALARDNAALNAL-DQVSFVKADVSEYMREADEAGRAYDVVVLDPPKLAPNRGTLPRARTKYQRLNEQAMKLVAPGGLLTTCSCSG-------------AMSQSGEFVPMLMDAAR 572          
BLAST of mRNA_F-serratus_M_contig994.21225.1 vs. uniprot
Match: A0A836CPI8_9STRA (Ribosomal RNA large subunit methyltransferase I-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPI8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 9.190e-13
Identity = 53/138 (38.41%), Postives = 81/138 (58.70%), Query Frame = 0
Query:  724 VTEEEAFAPGRTDGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRSSAQNALANDLAETTSFVRAEALHFARQAASEGRAWDLVVIDPPTL--RRKSNARASNAYARMAGAVSRLLRSGGMLM 859
            + ++  F   + + R  VR+++ G  VLD+FC +GGFALN+A GGA +   VD S  AV + A NA AN L    +F +A+AL +   A + G  +D+V++DPP L   +KS  RA   Y R+     +L+  GG+L+
Sbjct:  230 IGQKTGFYCDQRENREAVRRLAAGKTVLDMFCYSGGFALNAAAGGAAAVTAVDSSQGAVDAGAANAEANGL--RVAFEKADALKWMEAAVARGEKYDMVILDPPKLAPNKKSLPRALGRYRRINALGLQLVAPGGLLL 365          
BLAST of mRNA_F-serratus_M_contig994.21225.1 vs. uniprot
Match: UPI00103662EF (uncharacterized protein LOC114286087 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI00103662EF)

HSP 1 Score: 81.3 bits (199), Expect = 1.130e-12
Identity = 50/143 (34.97%), Postives = 78/143 (54.55%), Query Frame = 0
Query:  726 EEEAFAPGRTDGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRSSAQNALANDLAE-TTSFVRAEALHFARQAASEGRAWDLVVIDPPTL--RRKSNARASNAYARMAGAVSRLLRSGGMLMVVDGSG 865
            ++  F   + + R  +  +S G +VLD++C +GGFALN++ GGA +  GVD S  A+  + +N   N+L     S +R +A  F + A S    WD++++DPP L  RRK    AS  Y  +     +L + GG+LM    SG
Sbjct:  153 QKTGFYADQRENRQFISTISDGQKVLDMYCYSGGFALNASRGGAMNVTGVDSSLPALELANENIALNNLDPGKISVLRCDATDFMKDALSRNETWDIIIMDPPKLAPRRKVLQSASGMYRNLNSLAMQLTKRGGLLMTCSCSG 295          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig994.21225.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3YQ32_9PROT4.150e-1334.5723S rRNA methyltransferase n=3 Tax=unclassified Be... [more]
A0A7W0Y322_9DELT4.330e-1337.76Class I SAM-dependent rRNA methyltransferase n=1 T... [more]
A0A7S0X2R3_9CHLO6.220e-1336.05Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A836CPI8_9STRA9.190e-1338.41Ribosomal RNA large subunit methyltransferase I-li... [more]
UPI00103662EF1.130e-1234.97uncharacterized protein LOC114286087 n=1 Tax=Camel... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 303..334
e-value: 55.0
score: 12.6
coord: 266..298
e-value: 0.19
score: 20.8
coord: 512..544
e-value: 3.2
score: 16.7
coord: 549..580
e-value: 1.9
score: 17.5
coord: 475..507
e-value: 7.3E-5
score: 32.2
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 184..325
e-value: 6.0E-15
score: 55.0
coord: 431..590
e-value: 1.5E-11
score: 43.8
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 140..281
e-value: 3.7E-14
score: 54.5
coord: 425..606
e-value: 4.5E-20
score: 73.9
IPR007848Methyltransferase small domainPFAMPF05175MTScoord: 742..862
e-value: 1.8E-9
score: 37.4
NoneNo IPR availableGENE3D3.40.50.150coord: 720..893
e-value: 4.7E-35
score: 123.0
NoneNo IPR availablePANTHERPTHR42873FAMILY NOT NAMEDcoord: 736..883
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 739..884

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig994contigF-serratus_M_contig994:13602..23880 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig994.21225.1mRNA_F-serratus_M_contig994.21225.1Fucus serratus malemRNAF-serratus_M_contig994 13542..24907 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig994.21225.1 ID=prot_F-serratus_M_contig994.21225.1|Name=mRNA_F-serratus_M_contig994.21225.1|organism=Fucus serratus male|type=polypeptide|length=899bp
MWPTPHYLLSPFAGFPQGPPVFGAISPRPLGVSQHFAAEHATGADFISSI
VKSSSTSTSRRRLLLTARLEDSSVVTGVLETKTRKGPTTPTRPLVTEALT
SVLGKFTPSQLKRALDTREGGELERLLRGPGSDGERAACQLRNLLEAVVS
VVGKEKNDSAVKVITGCSALLLWESRTLRGRVDNLLAKDGVCSEEVSQLI
VAFPSFLTLSPGARDTIGHLLGTVGLTAKEVARLAKRRPHVLESSEFWRL
VDVFLNDLEISKTDLRKMIRSQPSLLSLSLTGDAQRNLKFLVEEMGLGKD
QVAKIVRTHPQVLTLNLDNNIRPVVQWLGSPDPSARIATGLSSTRGPEDP
RGPTTSAEKSSLQSYYPYSAAAAGSHGEEHRQQDGCDGDVILGLAEGREL
NETGLLSSLSAGETPIKVPAYVCGEWEWGLGLGPEERKRVIFKQGDMLWK
SVPGNLAKSTAWFVEEVGLSWDAMRKLTARSPALLCLSVENNLRPTLKFL
LEELGMDRTTLKQTIVNQPTLLTLSVPGNLRPKVTLFRDELGVLEGDIAD
LLNQCPRVMNASVKGRILPRFQAMRDAGVSPAFSDLRAICNYTESRFSDW
LERHTKPLPHGAASSSTNREASPSKTAAGKTCESRGAGDVGSDAEAAGLQ
SRPCRSVVRGSGEAARPSFRANSLAELGISYAVRSLLPNGERAPSATVRR
STAAMGASGKASVPPTRSSLDSAVTEEEAFAPGRTDGRALVRKVSRGLEV
LDLFCGTGGFALNSALGGARSALGVDKSARAVRSSAQNALANDLAETTSF
VRAEALHFARQAASEGRAWDLVVIDPPTLRRKSNARASNAYARMAGAVSR
LLRSGGMLMVVDGSGGEIFETHEEMVRDVFARSGEGCGSQFDVARGRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf
IPR007848Small_mtfrase_dom
IPR029063SAM-dependent_MTases