prot_F-serratus_M_contig989.21172.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig989.21172.1
Unique Nameprot_F-serratus_M_contig989.21172.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length267
Homology
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A2Z7AL20_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AL20_9LAMI)

HSP 1 Score: 165 bits (418), Expect = 7.720e-45
Identity = 90/259 (34.75%), Postives = 134/259 (51.74%), Query Frame = 0
Query:    1 MYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMG-KASLSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITA 258
            +YGL  A   W K+F   +++ G+ R  ADPC + ++  G   +I+++YVDD+LV    K         L   F +KDLG  +  LG  + RDR  R     Q  Y Q    RF  + +  I  P+     LS    P N+AE   M   PY  AVG+LM+    TRPD+A     ++++  N G EHW  V + L+Y+K T++  +  GG+   + L  +VD+D+A  PD  +S +G    L GGA+SW S+ Q + A
Sbjct:  131 LYGLKQAPRCWYKRFDSYIMSLGYNRLSADPCTYFKRSGGNDYIILLLYVDDMLVAGPNKDRVQELKAQLAREFDMKDLGPANKILGMQVHRDRSNRKIWLSQTNYLQKFLHRFNMQDSKPISTPLPVNFKLSSDMCPSNEAERMEMSRIPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGREHWSTVKRILRYIKGTSNAALCFGGSY--LTLRGYVDSDYAGDPDKRKSTTGYVFTLAGGAVSWVSKLQTVVA 387          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: UPI0004417247 (hypothetical protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI0004417247)

HSP 1 Score: 163 bits (413), Expect = 1.090e-44
Identity = 93/237 (39.24%), Postives = 126/237 (53.16%), Query Frame = 0
Query:   23 GFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMG-KASLSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITA 258
            GF R++ D CVF  +  G   +I+ VYVDD  ++  TK D+     +L   F  +DLG IS  L   ITRDR  R  + DQ+RY Q + + FG    S +  PM     LS +  P+   E A M G PY  AVGAL+++A  TRPD+A+    L++F  N GP HW AV    +YLK T    +T          +++VD DH   PD  RS SG  + +G GA+SW S+ Q   A
Sbjct:    2 GFARTRCDHCVFVWRK-GTTHIIVPVYVDDPTIVGRTKADKDAVKAELARRFKPRDLGPISLLLAVGITRDRAKRRLSMDQRRYTQDMLDTFGMTDCSPVLTPMDPNTRLSASMSPQTPEEKAEMVGVPYINAVGALLYLAIATRPDIAHAVGVLSRFSKNPGPRHWTAVKHLFRYLKGTLDYKLTFWPDESGEPFTSFVDADHGGNPDDGRSTSGFVLKIGSGAVSWSSKPQTTVA 237          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A8J6D8V3_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D8V3_9ROSI)

HSP 1 Score: 171 bits (433), Expect = 1.140e-44
Identity = 93/259 (35.91%), Postives = 140/259 (54.05%), Query Frame = 0
Query:    1 MYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKA-SLSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITA 258
            +YGL  A   W KKF   +  +G++++ +D CVF ++  G   +I+++YVDD+L++ +      +  ++L  SF +KDLG     LG  +TRDRKA+     Q+RY + V +RF   K   +  P      LS    P  + E   M   PY  AVG+LM+    TRPDLAY   T+++F  N G EHW AV   ++YL  T+++ +  G   E   L  + D+D A   D+ RS SG  +   GGA++W SR Q+  A
Sbjct: 1708 LYGLKQAPRQWYKKFESVMGEQGYKKTTSDHCVFVKRFSGDDFIILLLYVDDMLIVGQNASRIEKLKQELSKSFAMKDLGPAKQILGIRLTRDRKAKKLWLSQERYIEKVLQRFSMDKAKAVNTPFAMHFRLSVKHSPSTEKEKEEMQKIPYSSAVGSLMYAMVCTRPDLAYAVGTVSRFLSNPGREHWNAVKWIMRYLHGTSNMKLCFGN--EKPVLVGYTDSDMAGDIDSRRSTSGYLITYAGGAVAWQSRLQKCVA 1964          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI)

HSP 1 Score: 167 bits (422), Expect = 1.380e-44
Identity = 96/260 (36.92%), Postives = 138/260 (53.08%), Query Frame = 0
Query:    1 MYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKAS-LSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITAT 259
            +YGL  A   W +KF   + + GF+ +  D C++  K  G   +I+V+YVDD+L+ S      H  M  L S F +KDLG  S+ LG  I RDR        Q+ Y   V  RFG    +    P+ K    S    PKN+ E   M  FPY  AVG+LM+    TRPD+AY    L ++  N G +HWK   + ++YL+RT    +T   ++ ++++ A+ D+D A C D+ RS SG   ML GGA+SW S  Q + A+
Sbjct:  156 IYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYL-KFSGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYRRSS-HLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAVSWKSVKQTLVAS 413          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A165BJT7_EXIGL (Uncharacterized protein (Fragment) n=2 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165BJT7_EXIGL)

HSP 1 Score: 170 bits (431), Expect = 1.950e-44
Identity = 98/260 (37.69%), Postives = 142/260 (54.62%), Query Frame = 0
Query:    1 MYGLMHAGLLWSKKFGGELIAK-GFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMG-KASLSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITA 258
            +YGL  +G  W ++    L  K  F RS+ D  VF +   G  +VI+VV+VDD  + + T Q       D+R    I DLGE+ + LG  + RDR A+T    Q+ Y +++  R+       + +PM     LS AD P + +E A M   PY EAVG+LM+    TRPD++Y   TL +F  N G  HW AVL+  +YLK T    +T G  T + +L  + D D  S  D  R++SG A++L GGA+SW S++Q I +
Sbjct:  829 LYGLKQSGRRWYQRLVEILCGKLAFTRSEVDQAVFFKVVRGGQLVIVVVHVDDCTIAASTVQLVREFKNDVRKHVEITDLGELHWLLGIEVRRDRDAKTLALSQKSYIESILRRYNLEDVKPVSIPMDPNTRLSSADAPSSASEYALMRDKPYAEAVGSLMYAMLGTRPDISYAVTTLGRFSRNPGLPHWNAVLRVFKYLKGTRDAWLTYG--TTSNELHGFGDAD-GSMADDRRAISGFALILDGGAVSWSSKSQEIVS 1085          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z7AL20_9LAMI7.720e-4534.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00044172471.090e-4439.24hypothetical protein n=1 Tax=Punctularia strigosoz... [more]
A0A8J6D8V3_9ROSI1.140e-4435.91Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
A0A438HUL4_VITVI1.380e-4436.92Retrovirus-related Pol polyprotein from transposon... [more]
A0A165BJT7_EXIGL1.950e-4437.69Uncharacterized protein (Fragment) n=2 Tax=Exidia ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..126
e-value: 3.7E-17
score: 62.8
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 142..258
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 142..258
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 44..258

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig989contigF-serratus_M_contig989:297442..298242 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig989.21172.1mRNA_F-serratus_M_contig989.21172.1Fucus serratus malemRNAF-serratus_M_contig989 297100..298526 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig989.21172.1 ID=prot_F-serratus_M_contig989.21172.1|Name=mRNA_F-serratus_M_contig989.21172.1|organism=Fucus serratus male|type=polypeptide|length=267bp
MYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYV
DDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGT
FDQQRYAQTVTERFGTRKTSVIPVPMGKASLSRADGPKNDAEIAAMHGFP
YREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKR
TASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWF
SRAQRITATRRPNRST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like