mRNA_F-serratus_M_contig989.21172.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig989.21172.1
Unique NamemRNA_F-serratus_M_contig989.21172.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: H3G9E3_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9E3_PHYRM)

HSP 1 Score: 245 bits (626), Expect = 4.280e-72
Identity = 142/374 (37.97%), Postives = 206/374 (55.08%), Query Frame = 1
Query:    4 VVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVG*--LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKASLSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITAT 1119
            +V  P+ K  +G K VF+ K   +G V K+K R +AKG+ Q  GI + ++ +P   + SI  +LA  A+ D E   +DV+ AFL  DV EELY++ PDG+ D  N      L++A+YG   A   W+ K    L  +GF RS ADPCV+ R+   +   I+V+YVDDL++ S+TK+        L+  F IK+LGE+ Y LG  I R+R+ +T   +Q+ Y + + E+FG  K   +  P    S       K   E A +  +PYRE VGALM++A  TRPD+A     +AKF + +   HW A  + L+YLK T  +G+   GA +   +  + D + A   DT RS +G    L G AISW S+ Q   AT
Sbjct:   16 LVKMPRDKKAIGFKWVFRIKRDPNGNVVKFKARLVAKGYTQRPGIDFTDTFAPVAREESINASLATAAEEDMEAENVDVDTAFLYGDVEEELYMDQPDGFEDQSNPAMKCLLKQALYGTKQAARQWNSKLNKHLEDQGFRRSDADPCVYVRRSTDEYS-IVVIYVDDLMLFSKTKEHIESIKVALKKEFSIKELGELKYCLGIEIDRNREDKTILMNQRAYIKRLAEKFGVDKCKAVHTPADCNSKLV----KMTEEEAFVAKYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDMGIVFNGAIKGEPI-GYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVAT 383          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 248 bits (633), Expect = 5.560e-69
Identity = 146/376 (38.83%), Postives = 210/376 (55.85%), Query Frame = 1
Query:    7 VNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGK----ASLSRAD-GPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLG-VTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITA 1116
            V RP+ + V+  K VFK K G DG +EKYK R +AKGF Q++G+ + E+ +P    +S+R  LA+ A+LD E  Q+DV+ AFL  D+ EE+Y+++P G+R S + +  L KA+YGL  AG  W KK   E  A GF R  +D  VF +   G +++II +YVDD+L+LS+         EDL+S F + DLGE  + LG  I RDR  R     Q +Y +    + G      +  PM +      LS A+  PK           PY+ A+G+LM+    TRPDLA+T   L++     G EHW A+++  +YL+ TA    V CG   E   L  +VD D A+  +  RSV+G   ++  GA+SW S+ Q  TA
Sbjct:  638 VERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG-ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEIARDRPRRVLELSQHQYVEKCLAQHGMANCRPVSTPMAQNQKLVKLSEAEIDPK-----------PYQSALGSLMYAMIGTRPDLAFTVGALSQHAATPGKEHWIALMRVYRYLRGTADKKLVYCGTTKEKKPLLRYVDADWAANVNNRRSVTGFVFLISEGAVSWSSKRQHSTA 1001          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY)

HSP 1 Score: 244 bits (623), Expect = 6.780e-69
Identity = 141/375 (37.60%), Postives = 211/375 (56.27%), Query Frame = 1
Query:    4 VVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQ--VG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKAS-LSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITAT 1119
            +V+ P G   +G K VFK K    G++E+YK R +AKGF Q +G+ Y+E+ SP  ++ S R+ +A++A  D E  Q+DV+ AFL  D+TE++Y+  PDG++ S  +  V  L+K++YGL  A   W  KF   + + GF+ +  D C++  K  G  ++ +V+YVDD+L+ S            L  +F +KDLGE S+ LG  I RDR        Q+ Y   V ERF     +    P+ K   LS+   P+ND E   M   PY  AVG+LM+    TRPD+A+    L +F  + G +HW+A  K L+YL+RT    +T    ++ +++  + D D+A C D  +S SG   ML GGAISW S  Q +TA+
Sbjct:  312 LVDLPNGCRPIGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGVDYKETFSPVSSKDSFRIVMALVAHFDLELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYL-KISGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYR-RSDLLEVVGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTAS 684          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A146H2N5_MYCCL (Integrase catalytic domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H2N5_MYCCL)

HSP 1 Score: 248 bits (634), Expect = 1.020e-68
Identity = 141/372 (37.90%), Postives = 211/372 (56.72%), Query Frame = 1
Query:    4 VVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGY--RDSPNQVG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKASLSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKL-SAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRI 1110
            +V  P+G+ V+G++ VFK K   DG +E+YK R +A G  Q  G+ + ++ +PTP  S++R  LA+ A  D E   +D+  AFL  ++  ++Y+  P+G+  RDS + V  L K++YGL  A  +W KK    L   GF+R   +  V+  K  G+  VI+ V+VDD+ + S+ +    +   DL+S+F ++DLG  S+ LG  + RDR  RT +  Q++Y   + ERFG    + +  P+    L+   GP ++ +   M   PY  A GAL ++AN+TRPD+AY    L +F  N GP HWKAV   ++YLK T  L +T      N +L + + D DH   PD  RS SG  V +G GAISW SR Q I
Sbjct:  942 LVKLPEGRKVIGSRWVFKVKRNADGTIERYKGRVVAMGNHQRPGLDFDDTFAPTPKWSALRAILAIAALEDLELESVDISSAFLNGEINSKVYMRQPEGFVERDS-SWVWKLIKSIYGLKQASRIWHKKLDETLRGLGFQRVSCEHSVWVWKR-GEDRVIVPVFVDDITIASKNQPAVAKLKNDLKSAFKLRDLGPTSFLLGVEVIRDRPNRTLSLSQRQYTLDILERFGLADCNPVTTPLDADKLAALAGPLSEEDANYMRDKPYVNATGALSYLANVTRPDIAYAVGVLCRFNANPGPRHWKAVKHLMKYLKGTVDLKLTYAPNPHNTELFTTYSDADHGGNPDNGRSTSGMVVKIGTGAISWHSRLQTI 1311          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: UPI001F00A048 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F00A048)

HSP 1 Score: 247 bits (631), Expect = 1.520e-68
Identity = 142/373 (38.07%), Postives = 210/373 (56.30%), Query Frame = 1
Query:    4 VVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDS-PNQVG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKA-SLSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITA 1116
            +V  P+GK  L  K VFK K     +V KYK R + KGF+Q KGI + E  SP    +SIR+ L ++A ++ E  Q+DV+ AFL   + EE+Y+E P+G+  S  N V  L+K++YGL  A   W KKF   + ++G++++ AD CV+ +K      V +++YVDD+L++ +  +  ++  ++L  SF +KDLG     LG  ITRDRK R     Q++Y + V  RF       + +P+     LS+   P +  EI  M   PY  AVG+LM+    TRPD+A+    +++F  N G EHW+AV   L+YLK T  L +  GGA  +  L  + D D A   D+ +S SG      GGA+SW SR Q+  A
Sbjct:  680 IVELPRGKKALKNKWVFKLKKDGSEKVVKYKARLVVKGFQQKKGIDFDEIFSPVVKMTSIRVILGMVASMNLELEQMDVKTAFLHGGLDEEIYMEQPEGFEVSGDNLVCKLKKSLYGLKQAPRQWYKKFDSCMTSQGYKKTSADECVYIQKFSDGNFVALLLYVDDILIVGKDAKKINQLKKELSKSFDMKDLGPAQQILGMQITRDRKNRRLWLSQEKYIERVLARFNMNNAKPVSIPLANHFKLSKRSCPSSKEEIGEMSSVPYSSAVGSLMYAMVCTRPDIAHAVGKVSRFLSNPGKEHWEAVKWILRYLKGTIKLCLCYGGA--DPILEGYTDADMAGDLDSRKSTSGFIFTFAGGAVSWQSRLQKCVA 1050          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 248 bits (632), Expect = 2.050e-68
Identity = 147/376 (39.10%), Postives = 210/376 (55.85%), Query Frame = 1
Query:    7 VNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGK----ASLSRAD-GPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLG-VTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITA 1116
            V RP+ + V+  K VFK K G DG +EKYK R +AKGF Q++G+ + E+ +P    +S+R  LA+ A+LD E  Q+DV+ AFL  D+ EE+Y+++P G+  S + V  L KA+YGL  AG  W KK   E  A GF R  +D  VF +   G +++II +YVDD+L+LS+         EDL+S F + DLGE  + LG  ITRDR  R     Q +Y +    + G      +  PM +      LS A+  PK           PY+  +G+LM+    TRPDLA+T   L++     G EHW A+++A +YL+ TA    V CG   E   L  +VD D A+  +  RSV+G   ++  GA+SW S+ Q  TA
Sbjct:  961 VERPRNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG-ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEITRDRPRRVLELSQHQYVEKCLAQHGMADCRPVSTPMAQNQKLVKLSEAEIDPK-----------PYQSVLGSLMYAMIGTRPDLAFTVGALSQHAATPGKEHWIALMRAYRYLRGTADKKLVYCGTTKEKEPLLGYVDADWAANVNDRRSVTGFVFLISEGAVSWSSKRQHSTA 1324          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A2K3L3F6_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L3F6_TRIPR)

HSP 1 Score: 244 bits (622), Expect = 3.340e-68
Identity = 138/375 (36.80%), Postives = 215/375 (57.33%), Query Frame = 1
Query:    4 VVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGY--RDSPNQVG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKAS-LSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITAT 1119
            +V  P+G   +G K +FK K   +G VE+YK R +AKG+ Q +GI ++E+ SP  ++ S R  +A++A  D E  Q+DV+ AFL  ++ E +Y+  P+ +   DS N V  L K++YGL  A   W  KF   +++ GFE +  + CV++ K  G+  + +V+YVDD+L+ +      H   + L  +F +KDLG+ S+ LG  I RDR        Q+ Y + V +RFG ++      P+ K    S +  PK + EI  M   PY  AVG+LM+    TRPD+A+    L ++  N G +HWKA  K ++YLKRT    +T    ++ ++++ + D+D+A C D+ RS SG   ML GGA+SW S  Q +TA+
Sbjct:  468 LVPLPEGVKPIGCKWIFKTKRDSNGNVERYKARLVAKGYTQKEGIDFKETFSPVSSKDSFRTIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFVSGDSKNMVCKLTKSIYGLKQASRQWYHKFHEVVLSFGFEVNIVEDCVYQ-KFSGRKCIFLVLYVDDILLAANDIGILHETKKFLSRTFEMKDLGDASFVLGIQIHRDRSRGILGLSQRNYIEKVLKRFGMQECKPGDNPIAKGDKFSLSQCPKGNLEIQEMQKIPYASAVGSLMYAQVCTRPDIAFIVGMLGRYLSNPGMDHWKAAKKVMRYLKRTKDYMLTYR-RSDQLEITGYSDSDYAGCQDSKRSTSGYIYMLAGGAVSWRSAKQTLTAS 840          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A438FVW1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FVW1_VITVI)

HSP 1 Score: 241 bits (614), Expect = 1.010e-67
Identity = 144/377 (38.20%), Postives = 212/377 (56.23%), Query Frame = 1
Query:    4 VVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQ--VG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTS--VIPVPMG-KASLSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITAT 1119
            +V  P G   +G K VFK K    G +E+YK R +AKGF Q +GI Y E+ SP   + S+R+ LA++A  D E +Q+DV+ AFL  ++ EE+Y++ P+G+  S  +  V  L+K++YGL  A   W  KF   + + GF  +  D C++  K  G  V  +V+YVDD+L+ +  K   H   + L  +F +KD+GE SY +G  I RDR        Q+ Y   V ERF  +  S  V P+  G + +L++   PKND E   M   PY  AVG+LM+    TRPD+A+    L ++  N G +HWKA  K ++YL+ T    +     T N+++  + D+D A C D+ +S SG   +L GGAISW S  Q +TAT
Sbjct:  309 LVELPNGAKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGFVENVMDQCIYL-KVSGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLNQC--PKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYR-RTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILAGGAISWRSVKQTMTAT 681          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A2N9HDZ1_FAGSY (RNase H type-1 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HDZ1_FAGSY)

HSP 1 Score: 245 bits (625), Expect = 1.710e-67
Identity = 142/375 (37.87%), Postives = 212/375 (56.53%), Query Frame = 1
Query:    4 VVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQ--VG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKAS-LSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITAT 1119
            +V+ P G   +G K VFK K    G++E+YK R +AKGF Q +GI Y+E+ SP  ++ S R+ +A++A  D+E  Q+DV+ AFL  D+TE++Y+  P+G++ S  +  V  L+K++YGL  A   W  KF   + + GF+ +  D C++  K  G  ++ +V+YVDD+L+ S            L  +F +KDLGE S+ LG  I RDR        Q+ Y   V ERF     S    P+ K   LS+   P+ND E   M   PY  AVG+LM+    TRPD+A+    L +F  + G +HW+A  K L+YL+RT    +T    ++ +++  + D D+A C D  +S SG   ML GGAISW S  Q +TA+
Sbjct:  514 LVDLPNGCRPIGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGIDYKETFSPVSSKDSFRIVMALVAHFDFELHQMDVKTAFLNGDLTEDVYMLQPNGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYL-KISGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCSAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYR-RSDLLEVIGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTAS 886          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 244 bits (624), Expect = 2.090e-67
Identity = 132/368 (35.87%), Postives = 209/368 (56.79%), Query Frame = 1
Query:   31 VLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKASLSRADGPKNDAEIAAMHGF---PYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLK--RTASLGVTCGGATE-NMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITA 1116
            ++G++ VF +K  + G+V +YK R +A+GF QI G+ Y ++ SP     ++R  +A+ A  DWE RQ+D++ A+L  ++ EE+++E P+G+ D   +V  L+  +YGL  AG +W+KK   +L   GF R+ ADPCV+     GK+  I+ V+VDD+++  +++      +  L+  F +KDLGE    LG  I R+RK +T T  Q+ Y  T+ ERF   K + IP+P+      R    K D EI          Y+  +G++M+ +  T P LAY   TL++F  N G EH  A+ +  +YL   R   +G+  GG  +  + +  + D D AS P+  +S+SG   +LGGGAISW S+ Q   A
Sbjct:  898 LVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKIT-ILTVWVDDIILCGDSESRIDTTVSALKKIFEVKDLGEPKLLLGIQIIRNRKLKTITISQRNYINTILERFNYSKINPIPIPLDPNVTLR----KRDDEITPPEKHLVKEYQTKLGSIMYASIGTMPQLAYAVQTLSQFSSNPGAEHMSALKRVFKYLAHARDHEVGIVYGGTRQWPVDIIGYTDADWASNPNDRKSISGYVFLLGGGAISWSSKKQTTVA 1260          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3G9E3_PHYRM4.280e-7237.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401H123_9APHY5.560e-6938.83Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9GV19_FAGSY6.780e-6937.60Integrase catalytic domain-containing protein n=6 ... [more]
A0A146H2N5_MYCCL1.020e-6837.90Integrase catalytic domain-containing protein n=1 ... [more]
UPI001F00A0481.520e-6838.07DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A401G4V0_9APHY2.050e-6839.10Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3L3F6_TRIPR3.340e-6836.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FVW1_VITVI1.010e-6738.20Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9HDZ1_FAGSY1.710e-6737.87RNase H type-1 domain-containing protein n=1 Tax=F... [more]
A0A0C3AKI0_9AGAM2.090e-6735.87Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig989contigF-serratus_M_contig989:297100..298526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue1.7e-39
Seed eggNOG ortholog164328.Phyra71619
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1427
Cds size801
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig989.21172.1prot_F-serratus_M_contig989.21172.1Fucus serratus malepolypeptideF-serratus_M_contig989 297442..298242 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932778.8735828-UTR-F-serratus_M_contig989:297099..2974411622932778.8735828-UTR-F-serratus_M_contig989:297099..297441Fucus serratus maleUTRF-serratus_M_contig989 297100..297441 +
1690964470.684142-UTR-F-serratus_M_contig989:297099..2974411690964470.684142-UTR-F-serratus_M_contig989:297099..297441Fucus serratus maleUTRF-serratus_M_contig989 297100..297441 +
1622932778.9106004-UTR-F-serratus_M_contig989:298242..2985261622932778.9106004-UTR-F-serratus_M_contig989:298242..298526Fucus serratus maleUTRF-serratus_M_contig989 298243..298526 +
1690964470.7100713-UTR-F-serratus_M_contig989:298242..2985261690964470.7100713-UTR-F-serratus_M_contig989:298242..298526Fucus serratus maleUTRF-serratus_M_contig989 298243..298526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932778.8933263-CDS-F-serratus_M_contig989:297441..2982421622932778.8933263-CDS-F-serratus_M_contig989:297441..298242Fucus serratus maleCDSF-serratus_M_contig989 297442..298242 +
1690964470.6995745-CDS-F-serratus_M_contig989:297441..2982421690964470.6995745-CDS-F-serratus_M_contig989:297441..298242Fucus serratus maleCDSF-serratus_M_contig989 297442..298242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig989.21172.1

>prot_F-serratus_M_contig989.21172.1 ID=prot_F-serratus_M_contig989.21172.1|Name=mRNA_F-serratus_M_contig989.21172.1|organism=Fucus serratus male|type=polypeptide|length=267bp
MYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYV
DDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGT
FDQQRYAQTVTERFGTRKTSVIPVPMGKASLSRADGPKNDAEIAAMHGFP
YREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKR
TASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWF
SRAQRITATRRPNRST*
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mRNA from alignment at F-serratus_M_contig989:297100..298526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig989.21172.1 ID=mRNA_F-serratus_M_contig989.21172.1|Name=mRNA_F-serratus_M_contig989.21172.1|organism=Fucus serratus male|type=mRNA|length=1427bp|location=Sequence derived from alignment at F-serratus_M_contig989:297100..298526+ (Fucus serratus male)
AAGGTCGTCAATCGACCCAAAGGAAAAACCGTACTCGGCACCAAGACCGT TTTTAAACGGAAGGTCGGCCAGGATGGCCGTGTAGAAAAATACAAGTGCC GCTTCATGGCCAAGGGTTTCCGCCAGATCAAGGGGATCCATTACCAAGAG TCATCGTCGCCGACTCCTACACAGTCGAGCATCCGGATGGCGCTGGCGGT GATGGCCCAGTTGGACTGGGAGGGGCGGCAGCTTGACGTAGAAATGGCGT TTCTCGAGGCGGATGTTACGGAGGAGCTATACGTTGAGCTCCCCGATGGG TATCGCGACTCGCCGAATCAGGTTGGATGACTGCAGAAGGCCATGTACGG CCTGATGCACGCCGGACTACTGTGGTCGAAGAAGTTCGGCGGAGAGTTGA TAGCGAAGGGGTTCGAGAGGTCCCAAGCCGATCCCTGTGTGTTCCGGCGG AAGCATCTAGGGAAGGTCGTTGTCATCATTGTGGTCTACGTTGACGATCT ACTGGTGCTGAGCGAAACGAAGCAGGACGAGCATCGGGCGATGGAAGACC TTCGATCCAGCTTCCCCATCAAAGATCTAGGGGAGATCTCGTACTACCTG GGATGTCACATTACTCGGGACCGCAAGGCCAGGACGGGGACGTTCGATCA GCAGCGTTACGCGCAGACAGTAACCGAGCGATTCGGAACTCGGAAGACCA GCGTGATCCCTGTTCCTATGGGGAAAGCGTCACTTTCGAGGGCAGACGGG CCGAAAAACGATGCTGAGATCGCAGCGATGCATGGCTTCCCGTATCGCGA GGCAGTGGGGGCACTTATGTGGGTAGCCAACATGACTCGGCCTGACCTAG CTTATACCGCGCACACGCTCGCCAAGTTCGGTGACAACCACGGGCCCGAG CACTGGAAGGCAGTACTGAAAGCGCTACAGTACCTGAAACGAACGGCGAG CCTAGGGGTAACATGTGGAGGCGCGACGGAGAACATGAAGCTATCGGCAT GGGTGGACACCGATCACGCATCATGCCCTGATACGCACCGTTCGGTATCG GGGGGCGCGGTGATGCTCGGTGGAGGAGCAATCAGTTGGTTTTCGCGGGC TCAGAGAATAACCGCGACGCGACGTCCGAATCGGAGTACGTAGCACTGGC GGAGATTGTGAATGAGCTACGTTTCCTTCGGCAGGTGAAAGCGTTTATGG TACCTCCAATCGACACCAACATCTGTGTTCACGAGGACAACGAAGGCGCT ATCAAGATGGCAGAGAACAGGTTTAGTAGTCGACGAACAAGACACATCGA CGTGAAGCATCATATGGTTCGGGATGCCGTCGATGGGGGAATAGTCCGTG TAGAGTATGTCAAGTCGAGAGAACAGCATGCGGACGTACTAACTAAGGCG ATAGATGCTAAGTCGTTTGAAAAGCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig989:297100..298526+

>mRNA_F-serratus_M_contig989.21172.1 ID=mRNA_F-serratus_M_contig989.21172.1|Name=mRNA_F-serratus_M_contig989.21172.1|organism=Fucus serratus male|type=CDS|length=1602bp|location=Sequence derived from alignment at F-serratus_M_contig989:297100..298526+ (Fucus serratus male)
ATGTACGGCCTGATGCACGCCGGACTACTGTGGTCGAAGAAGTTCGGCGG
AGAGTTGATAGCGAAGGGGTTCGAGAGGTCCCAAGCCGATCCCTGTGTGT
TCCGGCGGAAGCATCTAGGGAAGGTCGTTGTCATCATTGTGGTCTACGTT
GACGATCTACTGGTGCTGAGCGAAACGAAGCAGGACGAGCATCGGGCGAT
GGAAGACCTTCGATCCAGCTTCCCCATCAAAGATCTAGGGGAGATCTCGT
ACTACCTGGGATGTCACATTACTCGGGACCGCAAGGCCAGGACGGGGACG
TTCGATCAGCAGCGTTACGCGCAGACAGTAACCGAGCGATTCGGAACTCG
GAAGACCAGCGTGATCCCTGTTCCTATGGGGAAAGCGTCACTTTCGAGGG
CAGACGGGCCGAAAAACGATGCTGAGATCGCAGCGATGCATGGCTTCCCG
TATCGCGAGGCAGTGGGGGCACTTATGTGGGTAGCCAACATGACTCGGCC
TGACCTAGCTTATACCGCGCACACGCTCGCCAAGTTCGGTGACAACCACG
GGCCCGAGCACTGGAAGGCAGTACTGAAAGCGCTACAGTACCTGAAACGA
ACGGCGAGCCTAGGGGTAACATGTGGAGGCGCGACGGAGAACATGAAGCT
ATCGGCATGGGTGGACACCGATCACGCATCATGCCCTGATACGCACCGTT
CGGTATCGGGGGGCGCGGTGATGCTCGGTGGAGGAGCAATCAGTTGGTTT
TCGCGGGCTCAGAGAATAACCGCGACGCGACGTCCGAATCGGAGTACGTA
GATGTACGGCCTGATGCACGCCGGACTACTGTGGTCGAAGAAGTTCGGCG
GAGAGTTGATAGCGAAGGGGTTCGAGAGGTCCCAAGCCGATCCCTGTGTG
TTCCGGCGGAAGCATCTAGGGAAGGTCGTTGTCATCATTGTGGTCTACGT
TGACGATCTACTGGTGCTGAGCGAAACGAAGCAGGACGAGCATCGGGCGA
TGGAAGACCTTCGATCCAGCTTCCCCATCAAAGATCTAGGGGAGATCTCG
TACTACCTGGGATGTCACATTACTCGGGACCGCAAGGCCAGGACGGGGAC
GTTCGATCAGCAGCGTTACGCGCAGACAGTAACCGAGCGATTCGGAACTC
GGAAGACCAGCGTGATCCCTGTTCCTATGGGGAAAGCGTCACTTTCGAGG
GCAGACGGGCCGAAAAACGATGCTGAGATCGCAGCGATGCATGGCTTCCC
GTATCGCGAGGCAGTGGGGGCACTTATGTGGGTAGCCAACATGACTCGGC
CTGACCTAGCTTATACCGCGCACACGCTCGCCAAGTTCGGTGACAACCAC
GGGCCCGAGCACTGGAAGGCAGTACTGAAAGCGCTACAGTACCTGAAACG
AACGGCGAGCCTAGGGGTAACATGTGGAGGCGCGACGGAGAACATGAAGC
TATCGGCATGGGTGGACACCGATCACGCATCATGCCCTGATACGCACCGT
TCGGTATCGGGGGGCGCGGTGATGCTCGGTGGAGGAGCAATCAGTTGGTT
TTCGCGGGCTCAGAGAATAACCGCGACGCGACGTCCGAATCGGAGTACGT
AG
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