prot_F-serratus_M_contig972.21055.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig972.21055.1
Unique Nameprot_F-serratus_M_contig972.21055.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length210
Homology
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.150e-16
Identity = 63/244 (25.82%), Postives = 118/244 (48.36%), Query Frame = 0
Query:    2 VLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAA-------------AGV------------------PTLSKAVEP--RNPEEKEEMRKFPYRETVGALMWTATMTW---PDIACAVRAGCGLCMEVYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP 209
            ++A++VDDIL +A  ++  +     LG  +  K++G+  +++GC   R+R+A  +++ Q  Y+  + +RF+V + ++IPA+             AG                   P +S AV    R+  E ++      ++ +  L+ TA +T    PD +            VY D DF +  + RR+VSGA++++A   + W S+ Q+  +  T  AEY  + + V E LF+  + +F+ P
Sbjct:  907 MVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDAST------LVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRP 1143          
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A1S3YAN3_TOBAC (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3YAN3_TOBAC)

HSP 1 Score: 85.1 bits (209), Expect = 6.810e-16
Identity = 62/217 (28.57%), Postives = 105/217 (48.39%), Query Frame = 0
Query:    1 MVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPTLSKA---VEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVR-----------AGCGLCMEVYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQV 203
            ++LAVYVDDI+    D + +      L  + K+KD+G   Y++G  ++       L L+Q  ++  + K +D  +A ++ +   +    KA   +   NPE         YR  +G L++  T T PDI   V+            G     + Y+D D+ AC D R++V+G  + L+   I W S+ Q V +  +  AEY  LS+VV E+ +L ++
Sbjct:   45 VILAVYVDDIIVTGNDLSEISVLKQILDNEFKIKDLGSLHYFLGIQVSVMPSG--LLLNQKKFVIDLLKEYDCLEANSVVSPLELNQKLKADVGILLPNPER--------YRSLIGKLLFL-TRTRPDICFGVQHLSQFLHTPRVPGSYSSSQAYSDSDWAACPDTRKSVTGFCIFLSDSLIGWKSKKQPVVSLSSAEAEYRALSKVVTELSWLSRL 250          
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A0G4EYZ9_VITBC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EYZ9_VITBC)

HSP 1 Score: 85.5 bits (210), Expect = 8.790e-16
Identity = 48/133 (36.09%), Postives = 78/133 (58.65%), Query Frame = 0
Query:    1 MVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNI--PAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVR 131
            ++L V+VDDIL    +Q  +  F   L      KD+G+   ++G  I R+R+ R L++ Q  Y++ + KRF ++ A  +  P A+G+  L+  + P+  EEK +M+K PYR+ VGALM+ +    PDIA  V+
Sbjct:  396 ILLVVFVDDILI-VSEQEGVTWFKQQLSSVFATKDLGEVDIFLGLKIIRDRQERTLQITQPQYIDKMLKRFSMENANPVDFPCASGI-QLTSEMSPKTDEEKTKMKKVPYRQLVGALMFCSVTCRPDIAYVVK 526          
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A0G4E9L7_VITBC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4E9L7_VITBC)

HSP 1 Score: 82.4 bits (202), Expect = 9.740e-16
Identity = 47/133 (35.34%), Postives = 78/133 (58.65%), Query Frame = 0
Query:    1 MVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIP--AAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVR 131
            ++L V+VDDIL    DQ  +  F   L      KD+G+   ++G  I  +R+ R L++ Q  Y++ + KRF ++ A ++   +A+G+  L+  + P+  EEK +M+K PYR+ VGALM+ +    PDIA  V+
Sbjct:   42 ILLVVFVDDILI-VSDQEGVTWFKQQLSSVFATKDLGEVDIFLGLKIICDRQERTLRITQPQYVDKMLKRFSMENANSVDFLSASGI-QLTSEMSPKTNEEKTKMKKVPYRQLVGALMFCSVTCRPDIAYVVK 172          
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: H3H9V9_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9V9_PHYRM)

HSP 1 Score: 85.1 bits (209), Expect = 1.260e-15
Identity = 47/131 (35.88%), Postives = 82/131 (62.60%), Query Frame = 0
Query:    2 VLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKK--ATNIPAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAV 130
            ++ VYVDD++  ++ +A +      L ++  +K++G+  Y +G  I RNR  + + ++Q  Y++ +A++F V+K  A + PA +     SK V+P   E+++ + ++PYRE VGALM+ AT T PDIA AV
Sbjct:  508 IIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSN----SKLVKPS--EDEDFVPRYPYRELVGALMYLATCTRPDIAQAV 632          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRL9_9PHAE4.150e-1625.82Integrase catalytic domain-containing protein n=2 ... [more]
A0A1S3YAN3_TOBAC6.810e-1628.57uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A0G4EYZ9_VITBC8.790e-1636.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0G4E9L7_VITBC9.740e-1635.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H9V9_PHYRM1.260e-1535.88CCHC-type domain-containing protein n=1 Tax=Phytop... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..77
e-value: 3.6E-10
score: 39.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig972contigF-serratus_M_contig972:213727..214464 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig972.21055.1mRNA_F-serratus_M_contig972.21055.1Fucus serratus malemRNAF-serratus_M_contig972 213256..214683 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig972.21055.1 ID=prot_F-serratus_M_contig972.21055.1|Name=mRNA_F-serratus_M_contig972.21055.1|organism=Fucus serratus male|type=polypeptide|length=210bp
MVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRN
RKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPTLSKAVEPRNPEEK
EEMRKFPYRETVGALMWTATMTWPDIACAVRAGCGLCMEVYTDLDFRACL
DMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFL
RQVQEFMEP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2