mRNA_F-serratus_M_contig972.21055.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig972.21055.1
Unique NamemRNA_F-serratus_M_contig972.21055.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 8.030e-79
Identity = 153/428 (35.75%), Postives = 228/428 (53.27%), Query Frame = 1
Query:  148 EKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EFPGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVRAGC-------------------------------------GLCMEVYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDMQKF 1320
            E Y+PT A +S+  L AM   ++  LRHFD +  F+++D+DE++++ +PE      G + +LNK++ G  +A R W++     +  +G  Q  AD CVFR + +G   + L V+VDDI +  +++   D+F   L   V +K++GD  +Y GC   R+  A  LK+ Q  Y E +   F V+    IP   G+  LS+       ++ EE+  +P+RE +G+LMW AT T PDIA AVRA                                       GL MEV+ D D+ +    RR+VSG +++   G ISW SR Q+     T  AEY +L++V+ EVLFLRQV  FM P   +  +  FEDN GAI LA N   I++  +KHIDV+HH +R+    +++ + +V S  QHAD LTK L    F
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEF------DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNP--ISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 427          
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 6.600e-77
Identity = 153/428 (35.75%), Postives = 228/428 (53.27%), Query Frame = 1
Query:  148 EKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EFPGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVRAGC-------------------------------------GLCMEVYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDMQKF 1320
            E Y+PT A +S+  L AM   ++  LRHFD +  F+++D+DE++++ +PE      G + +LNK++ G  +A R W++     +  +G  Q  AD CVFR + +G   + L V+VDDI +  +++   D+F   L   V +K++GD  +Y GC   R+  A  LK+ Q  Y E +   F V+    IP   G+  LS+       ++ EE+  +P+RE +G+LMW AT T PDIA AVRA                                       GL MEV+ D D+ +    RR+VSG +++   G ISW SR Q+     T  AEY +L++V+ EVLFLRQV  FM P   +  +  FEDN GAI LA N   I++  +KHIDV+HH +R+    +++ + +V S  QHAD LTK L    F
Sbjct:  184 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEF------DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNP--ISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 601          
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 8.360e-74
Identity = 152/457 (33.26%), Postives = 243/457 (53.17%), Query Frame = 1
Query:   61 KIGQDGKVQKYKCRLVAQGFWQVEGVHHTEKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EFPGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVRAGCGLCME-------------------------------------VYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDMQKF 1320
            K  + GK+ K K RLVA+GF Q  GV + E +SPT+ AASI  ++A+    + EL H D E  F ++ +D E+ +++P       G + RLNK++ G  +A R +  +   D+  IG  Q+ +DPCV R ++  E   ++A++VDDIL +A  +   +     LG  +  K++G+  +++GC  +R+R+A  +++ Q  Y+  + +RF++ + ++IPA       S A + R+  E EE    P+RE VG LMW A  T P+ + AVR       E                                     VY D DF +    RR+VSGA++++A   +SW S  Q+  +  T  AEY  + + V E LF+  + + + P  +   +D FEDN GAI LA N   ++S R+KHIDV+HH +R+ ++   + V +V S++QHAD+LTK L    F
Sbjct:  267 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDIL-YAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENP--LSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLF 713          
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 1.770e-73
Identity = 154/457 (33.70%), Postives = 249/457 (54.49%), Query Frame = 1
Query:   61 KIGQDGKVQKYKCRLVAQGFWQVEGVHHTEKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EFPGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVRAGCGLCME-------------------------------------VYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDMQKF 1320
            K  + GK+ K K RLVA+GF Q  GV + E +SPT+ AAS   ++A+    + EL H+D E  F+++++D E+++++P       G V RLNK++ G  +A R +  +   ++  IG  Q+ +DPCV R ++  E   ++A++VDDIL +A  ++  +     LG  +  K++G+  +++GC   R+R+A  +++ Q  Y+  + +RF+V + ++IPA+   PT       R+  E E     P+RE VG+LMW A  T PDI+ AVRA      E                                     VY D DF +  + RR+VSGA++++A   + W S+ Q+  +  T  AEY  + + V E LF+  + +F+ P  +   +D  EDN GAI LA N   ++S R+KHIDV+HH +R+ ++   + V +V SE+QHAD+LTK L    F
Sbjct:  502 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPAS---PTNDY----RSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENP--LSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLF 948          
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 4.380e-73
Identity = 152/428 (35.51%), Postives = 228/428 (53.27%), Query Frame = 1
Query:  148 EKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EFPGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVRAGC-------------------------------------GLCMEVYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDMQKF 1320
            E Y+PT A +S+  L AM   ++  LRHFD +  F+++D+DE++++ +PE      G + +LNK++ G  +A R W++     +  +G  Q  AD CVFR + +G   + L V+VDDI +  +++   D+F   L   V +K++GD  +Y GC   R+  A  LK+ Q  Y E +   F V+    IP   G+  LS+       ++ EE+  +P+RE +G+LMW AT T PDIA AVRA                                       GL MEV+ D D+ +    RR+VSG +++   G ISW SR Q+     T  AEY +L++V+ EVLFLRQV  FM P   +  +  FEDN GAI LA N   I++  +KHIDV+HH +R+    +++ + +V S  QHA+ LTK L    F
Sbjct:  705 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEF------DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNP--ISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDF 1122          
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 1.390e-72
Identity = 158/457 (34.57%), Postives = 244/457 (53.39%), Query Frame = 1
Query:   61 KIGQDGKVQKYKCRLVAQGFWQVEGVHHTEKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EFPGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVRAGCGLCME--------------------------------------VYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDMQK 1317
            K  + GK+ K K RLVA+GF Q  GV + E +SPT+ AASI  L+A+    D EL H+D E  F+++ +D E+++++P       G V RLNK++ G  +A R +  +   D+  IG  Q+ +DPCV R ++  E   ++A++VDDIL +A  ++        LG  +  K++G+  +++GC   R+R+A  +++ Q  Y+  + +RF + + ++IPA       S A + R+  E EE    P+RE VG LMW A  T PDI+ AVRA      E                                      VY D DF +    RR+VSGA++I+A   ++W S  Q+  +  T  AEY  + + V E LF+  + +F+ P      +D  EDN GAI LA N   ++S R+KHIDV+HH +R+ ++   + + +V SE QHAD+LTK L   K
Sbjct:  834 KADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDPCVLRFMMGDEVLGMVAIHVDDIL-YAGTKSLAKVVVEALGDSLPTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKICRTSSIPA-------SPANDNRSVMEDEEAGDVPFREVVGCLMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYLLATAHLTLKYKRDSTVDDVGTLVYVDADFASKATDRRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAENP--LSSCRSKHIDVRHHFLRNLTEEGVIEITHVPSEKQHADILTKALPRSK 1280          
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 1.620e-72
Identity = 154/457 (33.70%), Postives = 249/457 (54.49%), Query Frame = 1
Query:   61 KIGQDGKVQKYKCRLVAQGFWQVEGVHHTEKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EFPGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVRAGCGLCME-------------------------------------VYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDMQKF 1320
            K  + GK+ K K RLVA+GF Q  GV + E +SPT+ AAS   ++A+    + EL H+D E  F+++++D E+++++P       G V RLNK++ G  +A R +  +   ++  IG  Q+ +DPCV R ++  E   ++A++VDDIL +A  ++  +     LG  +  K++G+  +++GC   R+R+A  +++ Q  Y+  + +RF+V + ++IPA+   PT       R+  E E     P+RE VG+LMW A  T PDI+ AVRA      E                                     VY D DF +  + RR+VSGA++++A   + W S+ Q+  +  T  AEY  + + V E LF+  + +F+ P  +   +D  EDN GAI LA N   ++S R+KHIDV+HH +R+ ++   + V +V SE+QHAD+LTK L    F
Sbjct:  769 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPAS---PTNDY----RSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENP--LSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLF 1215          
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 3.070e-70
Identity = 150/457 (32.82%), Postives = 246/457 (53.83%), Query Frame = 1
Query:   61 KIGQDGKVQKYKCRLVAQGFWQVEGVHHTEKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EFPGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVRAGCGLCME-------------------------------------VYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDMQKF 1320
            K  + GK+ K K RLVA+GF Q  GV + E +SPT+ AAS   ++A+    + EL H+D E  F+++++D E+++++P         V RLNK++ G  +A R +  +   ++  IG  Q+ +DPCV R ++  E   ++A++VDDIL +A  ++  +     LG  +  K++G+  +++GC   R+RKA  +++ Q  Y+  + +RF++ + ++IPA+          + R+  E+E     P+RE VG+LMW A+ T  DI+ AVRA      E                                     VY D DF +    RR+VSGA++ +A   + W SR Q+  +  T  AEY  + + V E LF+  + +F+ P  +   +D  EDN GAI LA N   ++S R+KHIDV+HH +R+ ++   + V +V S++QHAD+LTK L    F
Sbjct:  943 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNN-------DDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENP--LSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLF 1389          
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.050e-69
Identity = 150/450 (33.33%), Postives = 232/450 (51.56%), Query Frame = 1
Query:   61 KIGQDGKVQKYKCRLVAQGFWQVEGVHHTEKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EFPGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVRA-----------------------------------GCGLCMEVYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPL 1305
            K  ++GK+  +K RLVA+GF Q+  V +    SP  ++ASI  +LA+   K   L H+D +  +  A +DEE+++++P    +    + +  +AI G  ++GR W     + +   G  Q KADPCVFRK+VD    M++ +YVDDIL    D+   +  A+ L +K   K++G+  ++ GC I R+ +A  L++ Q  Y++ + +RFDVK  + IPA  G     K        E EE  ++P RE +G++MW +T + PD++ AVRA                                   G GL + VY D  +    D RR+VSG    +    +S  S+ Q + +  +  AEY    E V E LF+R V  F+ P     ++   EDN GAI L  N   ++S RTKHIDV++H +R    +  + V +V + +QHADLLTK L
Sbjct:  791 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNP--LSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1229          
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.600e-69
Identity = 150/450 (33.33%), Postives = 232/450 (51.56%), Query Frame = 1
Query:   61 KIGQDGKVQKYKCRLVAQGFWQVEGVHHTEKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EFPGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVRA-----------------------------------GCGLCMEVYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPL 1305
            K  ++GK+  +K RLVA+GF Q+  V +    SP  ++ASI  +LA+   K   L H+D +  +  A +DEE+++++P    +    + +  +AI G  ++GR W     + +   G  Q KADPCVFRK+VD    M++ +YVDDIL    D+   +  A+ L +K   K++G+  ++ GC I R+ +A  L++ Q  Y++ + +RFDVK  + IPA  G     K        E EE  ++P RE +G++MW +T + PD++ AVRA                                   G GL + VY D  +    D RR+VSG    +    +S  S+ Q + +  +  AEY    E V E LF+R V  F+ P     ++   EDN GAI L  N   ++S RTKHIDV++H +R    +  + V +V + +QHADLLTK L
Sbjct: 1170 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNP--LSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1608          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE8.030e-7935.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE6.600e-7735.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE8.360e-7433.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE1.770e-7333.70Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K2R1_9PHAE4.380e-7335.51Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JB16_9PHAE1.390e-7234.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRL9_9PHAE1.620e-7233.70Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KZH7_9PHAE3.070e-7032.82Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE1.050e-6933.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.600e-6933.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig972contigF-serratus_M_contig972:213256..214683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score118.2
Seed ortholog evalue4.5e-24
Seed eggNOG ortholog4081.Solyc11g051150.1.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons2
Model size1320
Cds size630
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig972.21055.1prot_F-serratus_M_contig972.21055.1Fucus serratus malepolypeptideF-serratus_M_contig972 213727..214464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932755.250409-UTR-F-serratus_M_contig972:213255..2137261622932755.250409-UTR-F-serratus_M_contig972:213255..213726Fucus serratus maleUTRF-serratus_M_contig972 213256..213726 +
1690964458.0656903-UTR-F-serratus_M_contig972:213255..2137261690964458.0656903-UTR-F-serratus_M_contig972:213255..213726Fucus serratus maleUTRF-serratus_M_contig972 213256..213726 +
1622932755.3301325-UTR-F-serratus_M_contig972:214464..2146831622932755.3301325-UTR-F-serratus_M_contig972:214464..214683Fucus serratus maleUTRF-serratus_M_contig972 214465..214683 +
1690964458.098704-UTR-F-serratus_M_contig972:214464..2146831690964458.098704-UTR-F-serratus_M_contig972:214464..214683Fucus serratus maleUTRF-serratus_M_contig972 214465..214683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932755.2898405-CDS-F-serratus_M_contig972:213726..2141221622932755.2898405-CDS-F-serratus_M_contig972:213726..214122Fucus serratus maleCDSF-serratus_M_contig972 213727..214122 +
1690964458.0810122-CDS-F-serratus_M_contig972:213726..2141221690964458.0810122-CDS-F-serratus_M_contig972:213726..214122Fucus serratus maleCDSF-serratus_M_contig972 213727..214122 +
1622932755.308509-CDS-F-serratus_M_contig972:214230..2144641622932755.308509-CDS-F-serratus_M_contig972:214230..214464Fucus serratus maleCDSF-serratus_M_contig972 214231..214464 +
1690964458.090025-CDS-F-serratus_M_contig972:214230..2144641690964458.090025-CDS-F-serratus_M_contig972:214230..214464Fucus serratus maleCDSF-serratus_M_contig972 214231..214464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig972.21055.1

>prot_F-serratus_M_contig972.21055.1 ID=prot_F-serratus_M_contig972.21055.1|Name=mRNA_F-serratus_M_contig972.21055.1|organism=Fucus serratus male|type=polypeptide|length=210bp
MVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRN
RKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPTLSKAVEPRNPEEK
EEMRKFPYRETVGALMWTATMTWPDIACAVRAGCGLCMEVYTDLDFRACL
DMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFL
RQVQEFMEP*
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mRNA from alignment at F-serratus_M_contig972:213256..214683+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig972.21055.1 ID=mRNA_F-serratus_M_contig972.21055.1|Name=mRNA_F-serratus_M_contig972.21055.1|organism=Fucus serratus male|type=mRNA|length=1428bp|location=Sequence derived from alignment at F-serratus_M_contig972:213256..214683+ (Fucus serratus male)
GTTTATAAGCAGGTGGCTCGACCGAAGGATAAGCTCGTGGTTGGCACAAA AATGCAGCGAAAAATCGGACAGGACGGCAAGGTCCAGAAGTACAAGTGCC GACTTGTCGCTCAAGGGTTCTGGCAGGTGGAAGGTGTACACCACACGGAA AAGTACTCGCCCACGTCAGCGGCCGCATCAATCTGGACGCTTTTGGCGAT GACAGCGGCCAAGGACGGAGAGCTGCGCCATTTCGACGCGGAGCACGTAT TTTTGAAGGCGGATATTGATGAAGAAATATACATTGAGATCCCCGAAGAG TTTTAGGAGTTTCCGGGGGCAGTGGGACGGCTGAACAAGGCCATTTGCGG ATTCGTAAAGGCGGGGAGGTGCTGGAACAACAAGTTCTGTGAAGACATGA CGTCGATCGGATTGTAGCAAGCAAAAGCGGATCCGTGTGTGTTCCGCAAG GTCGTTGACGGCGAGGCGGAGATGGTGTTGGCCGTATACGTAGACGACAT TCTTGCCCACGCCAAAGACCAAGCGACGATGGATAGATTCGCGACTGGGC TTGGACAGAAGGTCAAACTGAAGGACATGGGCGACGCCGGGTACTACATG GGCTGTCACATCACAAGGAACCGTAAGGCGCGCGAGTTGAAGCTCGACCA ACACTTTTACATGGAGCCGATTGCAAAAAGGTTTGACGTCAAGAAGGCAA CTAACATACCGGCTGCGGCGGGGGTGCCAACGCTCTCAAAGGCGGTCGAA CCGCGGAACCCGGAGGAGAAGGAGGAAATGAGGAAGTTCCCGTACCGGGA GACAGTGGGGGCGCTTATGTGGACGGCGACGATGACATGGCCGGACATTG CGTGCGCCGTACGCGCTGTGGCTAGGTTCTACGAAAACCTTGGGCCGGCG CATAAGAAGGCAGTGATGAAGATCTTGCAGTATCTTCTTCACACGAAATA ATGGGGGATTACGTACGGTGGACAGGGCTGTGGACTCTGCATGGAAGTAT ACACGGACTTGGATTTCAGAGCCTGCCTGGATATGAGACGAACGGTTTCG GGTGCGGTGTTGATACTGGCGAAGGGGGCGATCAGCTGGGACTCAAGGAT GCAAGAAGTGACAGCATCGGGTACCCCGACGGCAGAGTACGCTACTTTAT CAGAGGTGGTAAACGAAGTTCTATTTTTGAGACAAGTGCAGGAGTTCATG GAACCGTAGAGGAGGGTCGGTGCAGTGGATTTTTTCGAAGACAATTAGGG GGCCATCAATCTGGCCACAAACAAGCATGCTATTAATAGTCTTAGAACTA AGCACATTGATGTGAAACACCATCTGGTGAGGGACGCATCTGACGCGCGA AAGGTTAGAGTAGCGTATGTTAGGTCGGAAGATCAGCACGCGGACTTACT CACCAAGCCGCTAGACATGCAAAAGTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig972:213256..214683+

>mRNA_F-serratus_M_contig972.21055.1 ID=mRNA_F-serratus_M_contig972.21055.1|Name=mRNA_F-serratus_M_contig972.21055.1|organism=Fucus serratus male|type=CDS|length=1260bp|location=Sequence derived from alignment at F-serratus_M_contig972:213256..214683+ (Fucus serratus male)
ATGGTGTTGGCCGTATACGTAGACGACATTCTTGCCCACGCCAAAGACCA
AGCGACGATGGATAGATTCGCGACTGGGCTTGGACAGAAGGTCAAACTGA
AGGACATGGGCGACGCCGGGTACTACATGGGCTGTCACATCACAAGGAAC
CGTAAGGCGCGCGAGTTGAAGCTCGACCAACACTTTTACATGGAGCCGAT
TGCAAAAAGGTTTGACGTCAAGAAGGCAACTAACATACCGGCTGCGGCGG
GGGTGCCAACGCTCTCAAAGGCGGTCGAACCGCGGAACCCGGAGGAGAAG
GAGGAAATGAGGAAGTTCCCGTACCGGGAGACAGTGGGGGCGCTTATGTG
GACGGCGACGATGACATGGCCGGACATTGCGTGCGCCGTACGCGCTATGG
TGTTGGCCGTATACGTAGACGACATTCTTGCCCACGCCAAAGACCAAGCG
ACGATGGATAGATTCGCGACTGGGCTTGGACAGAAGGTCAAACTGAAGGA
CATGGGCGACGCCGGGTACTACATGGGCTGTCACATCACAAGGAACCGTA
AGGCGCGCGAGTTGAAGCTCGACCAACACTTTTACATGGAGCCGATTGCA
AAAAGGTTTGACGTCAAGAAGGCAACTAACATACCGGCTGCGGCGGGGGT
GCCAACGCTCTCAAAGGCGGTCGAACCGCGGAACCCGGAGGAGAAGGAGG
AAATGAGGAAGTTCCCGTACCGGGAGACAGTGGGGGCGCTTATGTGGACG
GCGACGATGACATGGCCGGACATTGCGTGCGCCGTACGCGCTGGCTGTGG
ACTCTGCATGGAAGTATACACGGACTTGGATTTCAGAGCCTGCCTGGATA
TGAGACGAACGGTTTCGGGTGCGGTGTTGATACTGGCGAAGGGGGCGATC
AGCTGGGACTCAAGGATGCAAGAAGTGACAGCATCGGGTACCCCGACGGC
AGAGTACGCTACTTTATCAGAGGTGGTAAACGAAGTTCTATTTTTGAGAC
AAGTGCAGGAGTTCATGGAACCGTAGGGCTGTGGACTCTGCATGGAAGTA
TACACGGACTTGGATTTCAGAGCCTGCCTGGATATGAGACGAACGGTTTC
GGGTGCGGTGTTGATACTGGCGAAGGGGGCGATCAGCTGGGACTCAAGGA
TGCAAGAAGTGACAGCATCGGGTACCCCGACGGCAGAGTACGCTACTTTA
TCAGAGGTGGTAAACGAAGTTCTATTTTTGAGACAAGTGCAGGAGTTCAT
GGAACCGTAG
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