prot_F-serratus_M_contig97.21040.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig97.21040.1
Unique Nameprot_F-serratus_M_contig97.21040.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length341
Homology
BLAST of mRNA_F-serratus_M_contig97.21040.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 251 bits (641), Expect = 1.340e-72
Identity = 144/338 (42.60%), Postives = 213/338 (63.02%), Query Frame = 0
Query:    1 VRRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDDEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVK--KEDKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGAYLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVLEDNGGAIKLATNKHASRRTKHIDVKHHLVRD 336
            V  L +++YGL QA R WN     ++ ++GFE A ADPCV+ +  + E E +V ++VDD+L  ++  A +    A + +KF++KDMG A + +G  I  + + R L   Q  Y ES+IK+F  +  K    P   GV  L+KADEPQ+ E+K +MK+ PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML +  + W S  Q+  A  ++EAEY+AL++ VK+ +++R++ + +    +VGA  + EDN GA+ LA N     RTKHID+++H VR+
Sbjct:  546 VCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFVRE 879          
BLAST of mRNA_F-serratus_M_contig97.21040.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 245 bits (626), Expect = 3.080e-72
Identity = 142/338 (42.01%), Postives = 209/338 (61.83%), Query Frame = 0
Query:    1 VRRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDDEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVK--KEDKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGAYLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVLEDNGGAIKLATNKHASRRTKHIDVKHHLVRD 336
            V  L +++YGL QA R WN      + ++GFE A  DPCV+ +  + E E +V ++VDD+L  ++ KA +    A + +KF++KDMG A + +G  I  + + R L   Q  Y ES+IK+F  +  K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ +  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML    + W S  Q+  A  ++EAEY+AL++ VK+ +++R++ + +    +VGA  + EDN GA+ LA N      TKHID+++H +RD
Sbjct:  280 VCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLIKDIGAE-QVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRYHFIRD 613          
BLAST of mRNA_F-serratus_M_contig97.21040.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 4.110e-72
Identity = 142/336 (42.26%), Postives = 197/336 (58.63%), Query Frame = 0
Query:    1 VRRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDDEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEDKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGAYLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVLEDNGGAIKLATNKHASRRTKHIDVKHHLVR 335
            +    +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD+ A M++V++VDDIL    D+   +   A L +KF  K++G+ +++ GC I R+ K   L+  Q  Y+ SM+KRFDV+   ++PA  GV  + K        E EE   +P REA+G++MW +T + PD++ AVRAVAR    P   H  A+ K   YL  T+D GI Y  G G GL M  Y D+ + A  + RRSVSG    +    +S  S+ Q + +  ++EAEY+A  E VK+ LF+R V  F+ P     ++ VLEDN GAI L  N  +S RTKHIDV  H +R
Sbjct:  907 IDEAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVAVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVKGGTLRISQTAYIGSMVKRFDVQSTSRIPATPGVDLVPKR-------EDEEGGEWPRREAIGSMMWVSTFSLPDVSFAVRAVARHAHAPAKRHWDAIQKTLGYLKETRDLGIAYQRGSGLGLAM--YVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVTFHFIR 1231          
BLAST of mRNA_F-serratus_M_contig97.21040.1 vs. uniprot
Match: A0A6H5KGA6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA6_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 4.260e-72
Identity = 133/337 (39.47%), Postives = 198/337 (58.75%), Query Frame = 0
Query:    1 VRRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDDEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEDKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGC-GLCMEAYTDSDFGAYLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVLEDNGGAIKLATNKHASRRTKHIDVKHHLVRD 336
            V RL K++YGL QA R ++ +   D+  IGFEQ+ +DPCV R ++ DE   ++ +HVDDIL    ++       A LG     K++G+  +++GC   R+R+   ++  Q  Y+ S+++RF+V +   +PA       S  ++ +S  E E  +  P+RE VG+LMW A  TRPDI+ AVRAVAR    P  +H KA  KI  YLL      + Y       +    Y D+DF +    RRSVSGA++++A   ++W SR Q+     T+EAEYVA+ + VK+ LF++ + EF+ PS R+G + V EDN GAI LA N  +S  +KHIDV HH +R+
Sbjct:    5 VVRLGKSLYGLRQASRIFHKRLVSDLKRIGFEQSLSDPCVLRFMMGDEVLGMIAIHVDDILYEGIERLAKMVVEA-LGDSLPTKNLGEIRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SLTNDYKSVMEDEGARDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHGKAAQKILNYLLEAAHLTLKYKQDTMVDVGTLVYVDADFASKATDRRSVSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEGAIALAENPLSSCNSKHIDVSHHFLRN 333          
BLAST of mRNA_F-serratus_M_contig97.21040.1 vs. uniprot
Match: A0A6A3GCN4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GCN4_9STRA)

HSP 1 Score: 236 bits (601), Expect = 5.280e-72
Identity = 139/335 (41.49%), Postives = 204/335 (60.90%), Query Frame = 0
Query:    4 LNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDDEAEMVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVK--KEDKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGAYLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVGAVNVLEDNGGAIKLATNKHASRRTKHIDVKHHLVRD 336
            L +++YGL  A R WN      + ++GFE A ADPCV+ +  + + E +V ++VDD+L  +          A + +KF++KDMG A + +G  I  + + R L   Q  Y ES+IK+F  +  K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+  YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML    + W S  Q+  A  ++EAEY+AL++ VK+ +++R++ + +    +VGA  + EDN GA+ LA N     RTKHID+++H +R+
Sbjct:    2 LLQSLYGLKHASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGKDECIVCLYVDDMLIAS--------VKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPYLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVHYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIRE 324          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig97.21040.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3YGI7_9STRA1.340e-7242.60Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3DSS8_9STRA3.080e-7242.01Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5L060_9PHAE4.110e-7242.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGA6_9PHAE4.260e-7239.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3GCN4_9STRA5.280e-7241.49Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..126
e-value: 8.2E-24
score: 84.6
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 156..337
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 7..329
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 156..337

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig97contigF-serratus_M_contig97:864216..865238 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig97.21040.1mRNA_F-serratus_M_contig97.21040.1Fucus serratus malemRNAF-serratus_M_contig97 864216..865238 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig97.21040.1 ID=prot_F-serratus_M_contig97.21040.1|Name=mRNA_F-serratus_M_contig97.21040.1|organism=Fucus serratus male|type=polypeptide|length=341bp
VRRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDDEAE
MVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRN
RKTRELKFDQHLYVESMIKRFDVKKEDKVPAASGVPTLSKADEPQSPEEK
EEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMK
IFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGAYLDTRRSVSGAVLMLA
KGAISWHSRMQEVTAAGTSEAEYVALAEAVKDVLFLRQVQEFMEPSMRVG
AVNVLEDNGGAIKLATNKHASRRTKHIDVKHHLVRDASNRK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like