prot_F-serratus_M_contig969.20999.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig969.20999.1
Unique Name	prot_F-serratus_M_contig969.20999.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	173

Homology

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BLAST of mRNA_F-serratus_M_contig969.20999.1 vs. uniprot
Match: A0A6H5KKW6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW6_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.760e-61
Identity = 98/166 (59.04%), Postives = 122/166 (73.49%), Query Frame = 0

Query:    8 GLRIENLRCDKGGEYTGQGFRTLCVGAGINIEYTATNTPQQNGVSERDGHTLAKITRCLVKGGEFPPFMWGELMFTATYLANRSPHSTLEEATPYSQIHSLEPDLTGLRAIGTRAFVHRDTYTKKLEERAFEGKLCRYSHNSKAYRIHIPAKGTVVESRNATFLET 173
            G RIE LRCDKGGE TG+  R  C  + I  E+ ATNTPQ+ GVSERD  TLA +TR L++ G+FP  MWGELM TA YL NR+PH+ L  ATPYS++++  PDL+ LRAIG RAFVH + + KKL++RAFEGKLC Y  +SK YRI++  K  + ESRN TF+ET
Sbjct:  134 GYRIEVLRCDKGGENTGEEMRNYCRESAIKPEFAATNTPQEIGVSERDSKTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERFKKKLDDRAFEGKLCGYGPDSKTYRIYVEGKDKMYESRNVTFIET 299

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BLAST of mRNA_F-serratus_M_contig969.20999.1 vs. uniprot
Match: A0A6H5JVS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS2_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 6.570e-61
Identity = 100/166 (60.24%), Postives = 122/166 (73.49%), Query Frame = 0

Query:    8 GLRIENLRCDKGGEYTGQGFRTLCVGAGINIEYTATNTPQQNGVSERDGHTLAKITRCLVKGGEFPPFMWGELMFTATYLANRSPHSTLEEATPYSQIHSLEPDLTGLRAIGTRAFVHRDTYTKKLEERAFEGKLCRYSHNSKAYRIHIPAKGTVVESRNATFLET 173
            G RIE LRCDKGGE TG+  R  C  + I +E+ ATNTPQ+ GVSERDG TLA +TR L++ G+FP  MWGELM TA YL NR+PH+ L  ATPYS++++  PDL+ LRAIG RAFVH + Y KKL +R FEGKLC Y  +SK YRI++  K  V ESRN TF+ET
Sbjct:  473 GYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKKKLGDRTFEGKLCGYGPDSKTYRIYVEGKDKVYESRNVTFIET 638

[Close]

BLAST of mRNA_F-serratus_M_contig969.20999.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 8.590e-61
Identity = 101/166 (60.84%), Postives = 124/166 (74.70%), Query Frame = 0

Query:    8 GLRIENLRCDKGGEYTGQGFRTLCVGAGINIEYTATNTPQQNGVSERDGHTLAKITRCLVKGGEFPPFMWGELMFTATYLANRSPHSTLEEATPYSQIHSLEPDLTGLRAIGTRAFVHRDTYTKKLEERAFEGKLCRYSHNSKAYRIHIPAKGTVVESRNATFLET 173
            G RIE LRCDKGGE TG+  R  C  + I +E+ ATNTPQ+ GVSERDG TLA +TR L++ G+FP  MWGELM TA YL NR+PH+ L  ATPYS++++  PDL+ LRAIG RAFVH + Y KKL++RAFEGKLC Y  +SK YRI++  K  V ESRN TF+ET
Sbjct:  671 GYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKKKLDDRAFEGKLCGYGPDSKTYRIYVEGKDKVYESRNVTFIET 836

[Close]

BLAST of mRNA_F-serratus_M_contig969.20999.1 vs. uniprot
Match: A0A6H5JL01_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL01_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.820e-60
Identity = 100/166 (60.24%), Postives = 123/166 (74.10%), Query Frame = 0

Query:    8 GLRIENLRCDKGGEYTGQGFRTLCVGAGINIEYTATNTPQQNGVSERDGHTLAKITRCLVKGGEFPPFMWGELMFTATYLANRSPHSTLEEATPYSQIHSLEPDLTGLRAIGTRAFVHRDTYTKKLEERAFEGKLCRYSHNSKAYRIHIPAKGTVVESRNATFLET 173
            G RIE LRCDKGGE TG+  R  C  + I +E+  TNTPQ+ GVSERDG TLA +TR L++ G+FP  MWGELM TA YL NR+PH+ L  ATPYS++++  PDL+ LRAIG RAFVH + Y KKL++RAFEGKLC Y  +SK YRI++  K  V ESRN TF+ET
Sbjct:  355 GYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAVTNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKKKLDDRAFEGKLCGYGPDSKTYRIYVEGKDKVYESRNVTFIET 520

[Close]

BLAST of mRNA_F-serratus_M_contig969.20999.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 1.880e-60
Identity = 99/153 (64.71%), Postives = 115/153 (75.16%), Query Frame = 0

Query:    1 MTVAAPLGLRIENLRCDKGGEYTGQGFRTLCVGAGINIEYTATNTPQQNGVSERDGHTLAKITRCLVKGGEFPPFMWGELMFTATYLANRSPHSTLEEATPYSQIHSLEPDLTGLRAIGTRAFVHRDTYTKKLEERAFEGKLCRYSHNSKAYR 153
            M VAA  G RIE +RCDKGGE TG  FR  C  + I +EY ATNTPQQ G SERDG TLA +TRCL+K G+FPP MWGELM TA YL NRSPHS L  ATPYS++H+  PDL+GLR IG RAFVH + Y KKL++RAFEGKLC +  +S+ YR
Sbjct:  534 MCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYR 686

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig969.20999.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig969.20999.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KKW6_9PHAE	1.760e-61	59.04	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JVS2_9PHAE	6.570e-61	60.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K3T5_9PHAE	8.590e-61	60.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JL01_9PHAE	1.820e-60	60.24	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KT84_9PHAE	1.880e-60	64.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 7..139 e-value: 2.3E-15 score: 58.3
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 11..172
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 11..172
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..109 score: 11.57
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 6..114

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig969	contig	F-serratus_M_contig969:279436..279954 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig969.20999.1	mRNA_F-serratus_M_contig969.20999.1	Fucus serratus male	mRNA	F-serratus_M_contig969 279436..280146 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig969.20999.1 ID=prot_F-serratus_M_contig969.20999.1|Name=mRNA_F-serratus_M_contig969.20999.1|organism=Fucus serratus male|type=polypeptide|length=173bp
MTVAAPLGLRIENLRCDKGGEYTGQGFRTLCVGAGINIEYTATNTPQQNG
VSERDGHTLAKITRCLVKGGEFPPFMWGELMFTATYLANRSPHSTLEEAT
PYSQIHSLEPDLTGLRAIGTRAFVHRDTYTKKLEERAFEGKLCRYSHNSK
AYRIHIPAKGTVVESRNATFLET

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf