prot_F-serratus_M_contig943.20799.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig943.20799.1
Unique Nameprot_F-serratus_M_contig943.20799.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length295
Homology
BLAST of mRNA_F-serratus_M_contig943.20799.1 vs. uniprot
Match: D8LFT3_ECTSI (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT3_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 9.160e-87
Identity = 147/200 (73.50%), Postives = 172/200 (86.00%), Query Frame = 0
Query:    1 MAEVARTLSLLRKEILITDEVLGALSRCQSGTKLDTDARNGIKEALVLLQGEEEKLVKAGEAVNAHQCLHADVEALRRQVRSEERRVQDCARHLTEADSVLRGPLQDAKRILEAGRQAEAAEIRVRDVVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALSAFADALG-NSLPADDLLRLVQDLDRPPRKT 199
            MAEV+R LSLLR+E  I DEVLGAL+RCQSGTKLD +AR  I++ALVLL G+E KL KA EA+  HQ LHA+VE+LR++VR  E++VQDCAR LTEAD+ LRGPL+DAKR+LEAGR+AEAAEI VRD+VDYAQRISGITSAP+YWKPGMAMVGFAPPAPRPEMMRAGALSAFA + G +SL   +LL L +DLDRPP +T
Sbjct:    1 MAEVSRVLSLLREETSIADEVLGALARCQSGTKLDANARAAIRKALVLLNGKEAKLTKASEALREHQQLHAEVESLRQEVRYGEQQVQDCARKLTEADAALRGPLRDAKRLLEAGRKAEAAEIDVRDIVDYAQRISGITSAPAYWKPGMAMVGFAPPAPRPEMMRAGALSAFAVSPGTSSLSLPELLTLARDLDRPPDQT 200          
BLAST of mRNA_F-serratus_M_contig943.20799.1 vs. uniprot
Match: A0A7S3UVI8_HETAK (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVI8_HETAK)

HSP 1 Score: 87.4 bits (215), Expect = 1.390e-16
Identity = 48/113 (42.48%), Postives = 67/113 (59.29%), Query Frame = 0
Query:   86 RVQDCARHLTEADSVLRGPLQDAKRILEAGRQAEAAEIRVRDVVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALSAFADALGNSLPADDLLRLVQDLDRPPRK 198
            R +D A  L+  +  LR  L+  K +++A R A A  + ++ +V YAQRI G T+AP YWKPGM MVGF PPAP PE +RAG+  A+A+ L      DD      + ++P  K
Sbjct:   76 RARDLASALSSKEKDLRIALRKVKPVVDAARLANANPVSLKGLVAYAQRIGGTTAAPPYWKPGMPMVGFIPPAPLPEQIRAGSFHAYANGLKKVDLKDDSAASATETEKPGNK 188          
BLAST of mRNA_F-serratus_M_contig943.20799.1 vs. uniprot
Match: A0A835YUZ4_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 6.230e-16
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 0
Query:   90 CARHLTEADSVLRGPLQDAKRILEAGRQAEAAEIRVRDVVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 170
            C   +  A + LR  L+ A++ L    +A AA + V D+V YAQRISG TSAP+YWKPGM MVGF PPAP PEMMR GAL+
Sbjct:   59 CVAAIAGASADLRHALESARKSLGEFDKACAAGVAVSDIVAYAQRISGTTSAPAYWKPGMPMVGFLPPAPLPEMMRMGALT 139          
BLAST of mRNA_F-serratus_M_contig943.20799.1 vs. uniprot
Match: A0A1V9Y9L5_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9L5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.020e-12
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 0
Query:   56 LVKAGEAVNAHQCLHADVEALRRQVRSEERRVQDCARHLTEADSVLRGPLQDAKRIL-EAGRQAEAAEIRVRDVVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 170
            L++  + +NAHQ    +++ L+ Q+  +E ++ + AR L      +   L   KR+L  A     A  +  +D++ YA +++  +SAP+ W+PG  M GF PPAP PEMMRAG LS
Sbjct:   59 LLQTVKQLNAHQVAQKELDRLKAQIAEKEAKIVNYARALRSGQKAISNVLLKHKRVLTNAKASPSATHLAPQDIIAYAHKVASTSSAPAGWQPGFPMFGFMPPAPTPEMMRAGVLS 174          
BLAST of mRNA_F-serratus_M_contig943.20799.1 vs. uniprot
Match: A0A024TZF4_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZF4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.810e-12
Identity = 45/125 (36.00%), Postives = 73/125 (58.40%), Query Frame = 0
Query:   48 LLQGEEEKLVKAGEAVNAHQCLHADVEALRRQVRSEERRVQDCARHLTEADSVLRGPLQDAKRILEAGRQAEAAEIRVR--DVVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 170
            L+  ++++L+   + +N HQ    +++AL+ Q+  +E+++   A+ L      +   L   +R LE   Q  ++++ +   +VV YA +I+G TSAP  WKP   M GF PPAP PEMMRAG LS
Sbjct:   49 LVVAKDKQLLNTVKQLNQHQSAQKELDALKAQIADKEQKIVRYAKELRSGQQSIASALAKHRRTLEQCHQDSSSKVVLDPLEVVAYAHKIAGSTSAPPNWKPEYPMFGFVPPAPTPEMMRAGVLS 173          
BLAST of mRNA_F-serratus_M_contig943.20799.1 vs. uniprot
Match: A0A6G0X371_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X371_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.180e-12
Identity = 43/125 (34.40%), Postives = 75/125 (60.00%), Query Frame = 0
Query:   48 LLQGEEEKLVKAGEAVNAHQCLHADVEALRRQVRSEERRVQDCARHLTEADSVLRGPLQDAKRILEAGRQAEAAEIRV--RDVVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 170
            L+  ++++L+ + + +N HQ    +++A++ Q+  +E+++   A+ L      +   L   +R L+   Q    ++++  RDV+ YA +I+  TSAP+ W+PG  M GF PPAP PEMMRAG LS
Sbjct:   50 LVVEKDKQLLHSIKQLNKHQAAQKELDAIKAQIADKEQKIIRYAKELRSGQQAISSVLAKHRRTLDQCAQDAPNKVKLAPRDVIAYAHKIACTTSAPANWQPGYPMFGFMPPAPTPEMMRAGVLS 174          
BLAST of mRNA_F-serratus_M_contig943.20799.1 vs. uniprot
Match: A0A8K1CAS9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAS9_PYTOL)

HSP 1 Score: 75.9 bits (185), Expect = 5.690e-12
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = 0
Query:   56 LVKAGEAVNAHQCLHADVEALRRQVRSEERRVQDCARHLTEADSVLRGPLQDAKRILEAGRQAEAAEIRVRDVVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 170
            L+ A + +  HQ    ++ A++ ++  ++++V   A  L ++   +   L+  +R+L+  RQ +   +  RDVV YA RI+G TSAP  W+PG  M GF PPAP+ +MMRAG LS
Sbjct:   58 LLSAVKTLVQHQVAQKELLAVQDEIHEKKQKVVRYAAQLRQSQEDIALVLKKHRRVLDHARQKQKVLLDPRDVVAYAHRIAGTTSAPKEWRPGFPMFGFMPPAPQEQMMRAGVLS 172          
BLAST of mRNA_F-serratus_M_contig943.20799.1 vs. uniprot
Match: A0A067BXL3_SAPPC (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BXL3_SAPPC)

HSP 1 Score: 74.3 bits (181), Expect = 1.740e-11
Identity = 39/116 (33.62%), Postives = 68/116 (58.62%), Query Frame = 0
Query:   56 LVKAGEAVNAHQCLHADVEALRRQVRSEERRVQDCARHLTEADSVLRGPLQDAKRILE-AGRQAEAAEIRVRDVVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 170
            L++  + +NAHQ    +++ ++ Q+  +E ++   AR L      +   L   +R+L  A   +  + ++ +D++ YA +++  +SAP+ W+PG  M GF PPAP PEMMRAG LS
Sbjct:   60 LLQTVKQLNAHQAAQKELDNIKAQIAEKEAKIVQYARELRGGQKAISNVLLKHRRVLSNAKASSTTSHMKPQDIIAYAHKVASTSSAPAGWQPGYPMFGFMPPAPTPEMMRAGVLS 175          
BLAST of mRNA_F-serratus_M_contig943.20799.1 vs. uniprot
Match: A0A1V9Y7Z7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7Z7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.290e-11
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 0
Query:   11 LRKEILITDEVLGALSRCQSGTK------LDTDARNGIKEALVLLQGEEEKLVKAGEAVNAHQCLHADVEALRRQVRSEERRVQDCARHLTEADSVLRGPLQDAKRILEAGRQA-EAAEIRVRDVVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 170
            L +   +  ++L ALS   S T        D+   + +K+  VLLQ      +K    +N HQ    +++ +++Q+  +E ++   A+ L      +   L   KR+LE  + A        +D++ YA +++  TSA   W+PG AMVGF PPAP PEMMRAG LS
Sbjct:   19 LNEHRFLAYKLLDALSHASSNTTPSILRTTDSLFEDVLKKDRVLLQ-----TIKQ---LNQHQRAQKELDRIKQQIAEKEAKIVAYAKELRTGQQAINSVLLKHKRVLENAKAAPNTPRFPPQDIIAYAHKVASTTSAALNWQPGFAMVGFLPPAPTPEMMRAGVLS 177          
BLAST of mRNA_F-serratus_M_contig943.20799.1 vs. uniprot
Match: W4FJC9_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FJC9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.880e-11
Identity = 43/125 (34.40%), Postives = 73/125 (58.40%), Query Frame = 0
Query:   48 LLQGEEEKLVKAGEAVNAHQCLHADVEALRRQVRSEERRVQDCARHLTEADSVLRGPLQDAKRILEAGRQAEAAEIRVR--DVVDYAQRISGITSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 170
            ++  ++++L++  + +N HQ    +++AL+ Q+  +E+++   A+ L      +   L   +R L    Q  A+++ +   D+V YA +I+G TSAP  W+P   M GF PPAP PEMMRAG LS
Sbjct:   48 MVVAKDKQLLRTVKQLNQHQTAQKELDALKAQIADKEQKIVRYAKELRSGQQSIASVLAKHRRTLTQCAQDAASKVVLDPLDIVAYAHKIAGSTSAPPNWQPEYPMFGFVPPAPTPEMMRAGVLS 172          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig943.20799.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LFT3_ECTSI9.160e-8773.50Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3UVI8_HETAK1.390e-1642.48Mediator of RNA polymerase II transcription subuni... [more]
A0A835YUZ4_9STRA6.230e-1656.79Mediator of RNA polymerase II transcription subuni... [more]
A0A1V9Y9L5_9STRA2.020e-1236.21Mediator of RNA polymerase II transcription subuni... [more]
A0A024TZF4_9STRA2.810e-1236.00Mediator of RNA polymerase II transcription subuni... [more]
A0A6G0X371_9STRA5.180e-1234.40Mediator of RNA polymerase II transcription subuni... [more]
A0A8K1CAS9_PYTOL5.690e-1237.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067BXL3_SAPPC1.740e-1133.62Mediator of RNA polymerase II transcription subuni... [more]
A0A1V9Y7Z7_9STRA2.290e-1132.34Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
W4FJC9_9STRA2.880e-1134.40Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 66..93
IPR019258Mediator complex, subunit Med4PFAMPF10018Med4coord: 51..173
e-value: 1.6E-13
score: 50.8
IPR019258Mediator complex, subunit Med4PANTHERPTHR13208MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4coord: 39..293

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig943contigF-serratus_M_contig943:265578..275488 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig943.20799.1mRNA_F-serratus_M_contig943.20799.1Fucus serratus malemRNAF-serratus_M_contig943 265378..275526 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig943.20799.1 ID=prot_F-serratus_M_contig943.20799.1|Name=mRNA_F-serratus_M_contig943.20799.1|organism=Fucus serratus male|type=polypeptide|length=295bp
MAEVARTLSLLRKEILITDEVLGALSRCQSGTKLDTDARNGIKEALVLLQ
GEEEKLVKAGEAVNAHQCLHADVEALRRQVRSEERRVQDCARHLTEADSV
LRGPLQDAKRILEAGRQAEAAEIRVRDVVDYAQRISGITSAPSYWKPGMA
MVGFAPPAPRPEMMRAGALSAFADALGNSLPADDLLRLVQDLDRPPRKTS
QRTAGQSVNGVEGTDDLSSQDSEKDEKGGRSSFSSTGERKKGGERRTAKG
DEKSVPTKLKRETSVNFGREDPPKRPKISLDLDDLDSDSEEDDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019258Mediator_Med4