prot_F-serratus_M_contig92.20591.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig92.20591.1
Unique Nameprot_F-serratus_M_contig92.20591.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length341
Homology
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BLAST of mRNA_F-serratus_M_contig92.20591.1 vs. uniprot
Match: D8LTM3_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM3_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 2.610e-84
Identity = 139/225 (61.78%), Postives = 162/225 (72.00%), Query Frame = 0 
Query:  102 MGNRLAADPTVQTAILNDLVRHSRRVPQGRRNINPSLQSPPGDERGLARLVDMLDSEEEAPNASERSRGTSGNRGSVHPPIRPDRRGFFDYDNEGSLQHLHLEPQVSDDWRIAYTPAQDRDWQPWNEEETKDSASESDLSGSRLSDRQLGCSCRKCHNSKEDISL---DEVASEGTCWKEILAEYECDICFEVLVGVHVLDNCGHHFCGACMERWIGKTSQENAP 323
            MG+RLAA P VQ AIL+DLV   RRVP GRR I+P+LQ PPG+ERGLARLVDMLD EEE+ + S R+  +   R S H  ++ DRRG FDYD+E  L HLHL+P+VS +    Y   Q   WQPW EEE  D  SES LS SRLSD +LGCSC+KCH S   +SL   +E A EGTCWK++LAE+ECDICF+VLVGVHVLDNCGH FCGACMERWI    Q   P
Sbjct:    1 MGHRLAAHPGVQNAILDDLVEQGRRVPSGRRGIHPNLQGPPGNERGLARLVDMLDPEEESSHRSTRTSRSGRGRSSGHLMLQRDRRGMFDYDDEPPLPHLHLDPRVSAELEGVYAEVQADGWQPWREEEKLD-GSESGLSSSRLSDGRLGCSCKKCHASS-GLSLGTEEEEAQEGTCWKDVLAEFECDICFDVLVGVHVLDNCGHTFCGACMERWIDNAPQGECP 223
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BLAST of mRNA_F-serratus_M_contig92.20591.1 vs. uniprot
Match: A0A4S8MSH8_DENBC (RING/U-box n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8MSH8_DENBC)

HSP 1 Score: 56.2 bits (134), Expect = 1.650e-5
Identity = 31/91 (34.07%), Postives = 40/91 (43.96%), Query Frame = 0 
Query:  246 SDRQLGCSCRKCHNSKEDISLDEVASEGTCWKEILAEYECDICFEVLVGVHVLDNCGHHFCGACMERWIGKTSQENAPCAGHRSTSSCLYE 336
            S R+  CS     N K     DE+  +      +  E  C ICF++LVG H+L+ CGH  CG C   WI    Q   P      T  C Y+
Sbjct:   64 SKRRRSCSPSVFPNKKAKAKQDELLDD------LSDEISCPICFDLLVGAHLLNPCGHTLCGPCSYTWITLKKQTTCPVC---RTKCCHYK 145
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig92.20591.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTM3_ECTSI2.610e-8461.78RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
A0A4S8MSH8_DENBC1.650e-534.07RING/U-box n=1 Tax=Dendrothele bispora (strain CBS... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 285..324
e-value: 1.1E-6
score: 28.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 263..338
e-value: 7.9E-9
score: 36.9
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 301..310
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 285..328
score: 10.586
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 271..334

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig92contigF-serratus_M_contig92:417733..439035 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig92.20591.1mRNA_F-serratus_M_contig92.20591.1Fucus serratus malemRNAF-serratus_M_contig92 416618..439066 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig92.20591.1 ID=prot_F-serratus_M_contig92.20591.1|Name=mRNA_F-serratus_M_contig92.20591.1|organism=Fucus serratus male|type=polypeptide|length=341bp
MWNSHGRSLITRTGPEAAAAITTRYQDQTRSGSNNGSEEELTQPISASEV
AEASSMIFRRSATPSADYVFSPSDAVPSEQRGGYVYPRLIPNQSLRGEVL
AMGNRLAADPTVQTAILNDLVRHSRRVPQGRRNINPSLQSPPGDERGLAR
LVDMLDSEEEAPNASERSRGTSGNRGSVHPPIRPDRRGFFDYDNEGSLQH
LHLEPQVSDDWRIAYTPAQDRDWQPWNEEETKDSASESDLSGSRLSDRQL
GCSCRKCHNSKEDISLDEVASEGTCWKEILAEYECDICFEVLVGVHVLDN
CGHHFCGACMERWIGKTSQENAPCAGHRSTSSCLYERWTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001841Znf_RING