prot_F-serratus_M_contig903.20460.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig903.20460.1
Unique Name	prot_F-serratus_M_contig903.20460.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	197

Homology

[Close]

BLAST of mRNA_F-serratus_M_contig903.20460.1 vs. uniprot
Match: D8LQW5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.280e-18
Identity = 57/138 (41.30%), Postives = 83/138 (60.14%), Query Frame = 0

Query:    3 LPPQSERWLSGIFRAIPSTQRIR-----------------AFVRTPEMVIFLLGLATLISLLSFIFDVITMKTFRPLTVTVFLSTGGYCVLLIQRPRCLNEADQVLV-EIMEATAAGASDRVITKEERRSMFHYFTLR 122
            LP   E W  G   A+P  +R+R                 + VR+PE  IF+LGLA L++ + FI D+IT +  RP +V VF++ G YC+ LI++ R L  ++Q LV EIM+ +A  +S RVI+KE+RR++F YFT R
Sbjct:   73 LPDFLEFW--GFAAAVPEDERLRREREXXXXXHRRRGLAGSCVRSPEFSIFVLGLAALLAFIVFICDMITGRRLRPTSVLVFVAAGTYCLALIKQQRDLAASEQALVIEIMDGSATSSSRRVISKEDRRNLFDYFTFR 208

[Close]

BLAST of mRNA_F-serratus_M_contig903.20460.1 vs. uniprot
Match: A0A6H5KVF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.330e-16
Identity = 52/140 (37.14%), Postives = 81/140 (57.86%), Query Frame = 0

Query:    3 LPPQSERWLSGIFRAIPSTQRIR-----------------AFVRTPEMVIFLLGLATLISLLSFIFDVITMKTFRPLTVTVFLSTGGYCVLLIQRPR---CLNEADQVLVEIMEATAAGASDRVITKEERRSMFHYFTLR 122
            LP   E W  G+  A+P  +R+R                 + VR+PE  IF+LGLA L++ + F  D+I  +  RP +V VF++ G YC+ L+++ R    L  A  ++VE+M+ +A  +S RVI+KE+RR++F YFT R
Sbjct:  100 LPNFLEFW--GLAAAVPEGERLRRERERRERSHNRRGPVGSCVRSPEFSIFVLGLAALLAFMVFFCDMIAGRRLRPTSVLVFVAAGTYCLALLKQQRDLAALERAPALVVEVMDGSATSSSRRVISKEDRRNLFDYFTFR 237

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig903.20460.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig903.20460.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LQW5_ECTSI	1.280e-18	41.30	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KVF8_9PHAE	1.330e-16	37.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 59..78
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..32
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 33..53
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 54..58
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 79..197
None	No IPR available	TMHMM	TMhelix		coord: 59..78
None	No IPR available	TMHMM	TMhelix		coord: 33..55

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig903	contig	F-serratus_M_contig903:331247..337231 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig903.20460.1	mRNA_F-serratus_M_contig903.20460.1	Fucus serratus male	mRNA	F-serratus_M_contig903 331244..337231 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig903.20460.1 ID=prot_F-serratus_M_contig903.20460.1|Name=mRNA_F-serratus_M_contig903.20460.1|organism=Fucus serratus male|type=polypeptide|length=197bp
MILPPQSERWLSGIFRAIPSTQRIRAFVRTPEMVIFLLGLATLISLLSFI
FDVITMKTFRPLTVTVFLSTGGYCVLLIQRPRCLNEADQVLVEIMEATAA
GASDRVITKEERRSMFHYFTLRPPTPLENAFSYEDAPTGASTLSGASTPS
GDGDGRGAEDFSMKALDQSSWYGDEAGRAQSGHPLNATVPSRGAHLG