mRNA_F-serratus_M_contig903.20460.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig903.20460.1
Unique NamemRNA_F-serratus_M_contig903.20460.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig903.20460.1 vs. uniprot
Match: D8LQW5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.790e-18
Identity = 57/138 (41.30%), Postives = 83/138 (60.14%), Query Frame = 1 
Query:   10 LPPQSERWLSGIFRAIPSTQRIR-----------------AFVRTPEMVIFLLGLATLISLLSFIFDVITMKTFRPLTVTVFLSTGGYCVLLIQRPRCLNEADQVLV-EIMEATAAGASDRVITKEERRSMFHYFTLR 369
            LP   E W  G   A+P  +R+R                 + VR+PE  IF+LGLA L++ + FI D+IT +  RP +V VF++ G YC+ LI++ R L  ++Q LV EIM+ +A  +S RVI+KE+RR++F YFT R
Sbjct:   73 LPDFLEFW--GFAAAVPEDERLRREREXXXXXHRRRGLAGSCVRSPEFSIFVLGLAALLAFIVFICDMITGRRLRPTSVLVFVAAGTYCLALIKQQRDLAASEQALVIEIMDGSATSSSRRVISKEDRRNLFDYFTFR 208
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BLAST of mRNA_F-serratus_M_contig903.20460.1 vs. uniprot
Match: A0A6H5KVF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.870e-16
Identity = 52/140 (37.14%), Postives = 81/140 (57.86%), Query Frame = 1 
Query:   10 LPPQSERWLSGIFRAIPSTQRIR-----------------AFVRTPEMVIFLLGLATLISLLSFIFDVITMKTFRPLTVTVFLSTGGYCVLLIQRPR---CLNEADQVLVEIMEATAAGASDRVITKEERRSMFHYFTLR 369
            LP   E W  G+  A+P  +R+R                 + VR+PE  IF+LGLA L++ + F  D+I  +  RP +V VF++ G YC+ L+++ R    L  A  ++VE+M+ +A  +S RVI+KE+RR++F YFT R
Sbjct:  100 LPNFLEFW--GLAAAVPEGERLRRERERRERSHNRRGPVGSCVRSPEFSIFVLGLAALLAFMVFFCDMIAGRRLRPTSVLVFVAAGTYCLALLKQQRDLAALERAPALVVEVMDGSATSSSRRVISKEDRRNLFDYFTFR 237
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig903.20460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQW5_ECTSI1.790e-1841.30RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KVF8_9PHAE1.870e-1637.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig903contigF-serratus_M_contig903:331244..337231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue2.5e-16
Seed eggNOG ortholog2880.D8LQW5
KEGG koko:K03257,ko:K15694
KEGG Pathwayko03013,map03013
KEGG ModuleM00428
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03019,ko04121,ko04147
Exons3
Model size595
Cds size591
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig903.20460.1prot_F-serratus_M_contig903.20460.1Fucus serratus malepolypeptideF-serratus_M_contig903 331247..337231 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932638.3241804-UTR-F-serratus_M_contig903:331243..3312461622932638.3241804-UTR-F-serratus_M_contig903:331243..331246Fucus serratus maleUTRF-serratus_M_contig903 331244..331246 +
1690964398.5810716-UTR-F-serratus_M_contig903:331243..3312461690964398.5810716-UTR-F-serratus_M_contig903:331243..331246Fucus serratus maleUTRF-serratus_M_contig903 331244..331246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932638.3363013-CDS-F-serratus_M_contig903:331246..3313751622932638.3363013-CDS-F-serratus_M_contig903:331246..331375Fucus serratus maleCDSF-serratus_M_contig903 331247..331375 +
1690964398.6067166-CDS-F-serratus_M_contig903:331246..3313751690964398.6067166-CDS-F-serratus_M_contig903:331246..331375Fucus serratus maleCDSF-serratus_M_contig903 331247..331375 +
1622932638.3508434-CDS-F-serratus_M_contig903:335957..3360961622932638.3508434-CDS-F-serratus_M_contig903:335957..336096Fucus serratus maleCDSF-serratus_M_contig903 335958..336096 +
1690964398.6192076-CDS-F-serratus_M_contig903:335957..3360961690964398.6192076-CDS-F-serratus_M_contig903:335957..336096Fucus serratus maleCDSF-serratus_M_contig903 335958..336096 +
1622932638.3652-CDS-F-serratus_M_contig903:336908..3372311622932638.3652-CDS-F-serratus_M_contig903:336908..337231Fucus serratus maleCDSF-serratus_M_contig903 336909..337231 +
1690964398.6288757-CDS-F-serratus_M_contig903:336908..3372311690964398.6288757-CDS-F-serratus_M_contig903:336908..337231Fucus serratus maleCDSF-serratus_M_contig903 336909..337231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig903.20460.1

>prot_F-serratus_M_contig903.20460.1 ID=prot_F-serratus_M_contig903.20460.1|Name=mRNA_F-serratus_M_contig903.20460.1|organism=Fucus serratus male|type=polypeptide|length=197bp
MILPPQSERWLSGIFRAIPSTQRIRAFVRTPEMVIFLLGLATLISLLSFI
FDVITMKTFRPLTVTVFLSTGGYCVLLIQRPRCLNEADQVLVEIMEATAA
GASDRVITKEERRSMFHYFTLRPPTPLENAFSYEDAPTGASTLSGASTPS
GDGDGRGAEDFSMKALDQSSWYGDEAGRAQSGHPLNATVPSRGAHLG
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mRNA from alignment at F-serratus_M_contig903:331244..337231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig903.20460.1 ID=mRNA_F-serratus_M_contig903.20460.1|Name=mRNA_F-serratus_M_contig903.20460.1|organism=Fucus serratus male|type=mRNA|length=5988bp|location=Sequence derived from alignment at F-serratus_M_contig903:331244..337231+ (Fucus serratus male)
GGCATGATCTTGCCGCCGCAGTCCGAGCGATGGCTGTCCGGGATCTTCAG
GGCGATTCCCAGCACCCAGCGCATACGTGCATTCGTACGGACTCCGGAGA
TGGTGATCTTTCTTCTGGGGCTGGCCACCTTGGTGAGTGGGCACGTACTT
GTCAGTTTTTGTTTTATTTATTATTGTAATTGTACAGACTATATAATACT
ACCCTGGTATACGTTTTTCTCGTTCTTGCCAGCAGTATGTACTCCGTCCA
TTTTGTTGCTGTACTTTTTTTTTTTTTCAAGAGATCGCATAAGCACGACC
TGACCTCTTTGTTTTTCCAGATGCCGCTTGTTTTGTGTTACTTTTGCGCG
AGTCAAAACAAAAGGGCAAGGTTGGGGGGTGTTTGTGTGGGTCTGATTCC
ATGAGGCTTGACATTGGAGGTTGGATAACACGTATTTATTACATCCTGAA
AGGAGACAAAACAAGACAACAAGAGAAGAAAGGAAGTGCCCGAAGGCAAC
TAGAAAGAGACTCTAGGAGTTCCAACATCACCGAATAATTTCCCAACAAC
GGCAGTTACACCGTAGTGGATAAGCCAACGGTTACAAAGTAAGATGGATA
ATCAAACACCCTCCCTGCATCGCAACGAACGTCACCGATGTACGTCTTGT
GCGGTTTCTTGAAACAATAGCTGAGAGTACGAAAGAGAAGATAACCCGGC
TTTACGGGATAAAACTCCCTCCCCGCTGAAACAACTCTTACAAGAGCCTA
CTTTCAACTCAAAAGAAACAAAACAAATCACTCAGGCAAATTCATAAGAA
ACGAACGGTGTCTAGCAAAAGCCTCTAGTCCAAGCGGCTTCGTCAGAATG
TCTGCATGTTGATTGCTGGACTCCTTGTACTGAATGTTAAGGACCTTACG
TTCTACTAACTCCCTGATAAAGTGATAACGTACATCAATATGCTTCGTCC
GCCCCCCGCTGATTGGGTTTTCTGCAATCGCGATCGCTCCTTGGTTGTCC
TCAAACAAGTCAATAGTTTCACTGACAAGCTCTGGGAATAACGCGGTGGC
TACGTATTCTGCCTCACTAGTAGAAATAGTAACACATTGCTGCGTAGTAC
TACTAGCACACAACTGTGCCCCCTACCATCACCGCCACTCCGGACACTGA
ACGCCTATCATTACCTGTATTGGCGTAATCCGCGTCTACATACACGGAGA
GCTTTCGGTCGCCATCCTTTACGAGCACCAAACCTGGATCTTTCGTTTTA
TTCAGGTACGCGATTATTTTCCTACCGGCTCGTCAGTGCCTCTCAGCAGG
ATCGTGGGCTTGATGTACTACTGCCCTAACCACATTGGCTATGTCTGGCC
GCGTCATACCACTCAACCAAATCAAACTACCAACAGTCGCCCGAACAGGT
TTATCACAGACCGGCTCGTCGTTCCTCCTAGGGCCGAGATCTGCCGATTG
AGAAGCCGGGAGATTAGACACTGCGTCAACTCCATAGTGGCTGGCAACAG
ACTCGATATACGCTCTTATGCGATGCGCGAAGAACGCCTCCTTATCACGC
TCAAACGCGCACCCTAGGTACCACGAGAGTCCTTCTCTCGTAGTATGGAA
CTCGTCAAAAAGACAAACAATCATAACTACTACATACATCATCCCTAATC
AGCCGGAAAGCACAACATTGAAGTCAAAATCAGCCTGAATGAATGCTTGT
TTTACATCTAGCTGTCGTAACTCCCAGTCATTTTTGACAGCAATAGCTAC
CAAGTTTAACACTGGACGCAGCTAAACATCAGGTGCCACACCTACGAATT
GTCCCTATCAGAAATGGCAAGATCAGCGTCCTTCACAGCGTGAGGGCAGG
AATTGGGATCTTCCAACATGTTGTTTCCCCGCTTCGTTCTAGAAACAAGA
AAAAAGGTGCCAGACGTAATCGACGATTTCCCCTCCTTCGAGAGGTCAAC
CGGGCCCGTACTCCGTACGCAGCCGGTCTATGGTGAGTTTATCCCTTTTT
CGCTCGAGCATCTGCTGAAACACTACATATTCATCAGGAAGAGCTCGCAG
GAAAAGTAAACAAACGACCTCGTCTTCAATCCGAACCATTGGACACACGT
TGCGGACATCTTCAATCATTGCAGCTGGTAAGGGAGCGTGGCGTAAAGTA
TCACGGTCTACACTACTTTCGATAGCCCGTGAGAGAATCTTCCAAGCAAT
GAAATGCTTTTGTATATTCTCGTGGAGAAAAGCCTCCTATAGAGCAGTGA
TGGACATTGTTTCGTCGGAACATCTACTCCTTCGGTAGAATTCCAAATGT
CAGCAATGGAAATTTTACTCATTCGGTACAAATTCCAAAAACATGCCGTC
ATATTTGGCCAAGCAAATCAACATTTGCTGCCAAGTTGGAAACATTAGTA
CCATCGAACAGAGGGACAATGTTTGACTTGGGTCTCACCATTTCCCCTCC
GGTACGGCACAGCTCCGCTGTCTCCGTTCTGCTGCTCGTTGAGGCAGGTC
CCTTTGGATCGGCACAGCTCCATTGTCGCTGTTTCTGCTGCTCGCCCCTT
TGAACAGCAGGACTTCTACTTTCTTCGACTCCCTGAAGTTCTAACTTATA
TTCTTCAGCCATCAGACGCAGCTGCTCCGCAGAGATCGTCTCAAAACGAT
GAAAAGTCAGCAAACGATGGAGCTCCGCTCCCCTCGCTTGCCCTTGCTCT
TGCTCTGAAAATCCAATAAACGATGAAGCTCCGCTTCCCTCGTTCCCTCG
TGGCGATGAACATCCAGTAAACGGTGAAGCTCCGCTTCCTCCGTTTCTTC
GAGGCGATGAACAGTCAGTAAAAGGTCAAGCACCGCTTGCCCCGTTCCCT
AGTGATGATCGCTCCATTTCTGTCAGCCATGACAGAACCAGTTACAACTT
CCAAAGGACACTAGCGTAGGTGTGGCACCTGATGTTTAGCTGCGTCCAGT
GTTAAACTTGGTAGCTATTGCTGTCAAAAAATGACTGGGAGTTACGACAG
CTAGATGTAAAACAAGCATTCATTCAGGCTGATTTTGACTTCAATGTTGT
GCTTTCCGGCTGATTAGGGATGATGTATGTAGTAGTTATGATTGTTTGTC
TTTTTGACGAGTTCCAGACTACGAGAGAAGGACTCTCATGGTACCTAGGG
TGCGCGTTTGAGCGTGATAAGGAGGCGTTCTTCGCTGGGAACACGATCCA
AGTCCTCACGACTGATGCTTGGACTACTGGAAACCCCCAAGTCTTCAAAC
TCGGCAGGTCCAGATCCTTCATTTCCGAATACGACGGTGCCGGGTGTGGT
CCTTCCACCAGAAACATCCGCTGTTGTTTGCGGCGCTGGTGACGCGGCTC
TCCCTTCTGAAGTAGCCACTGGAGTCAAGGATGACAGTTGCGCGGCCCTC
CCCTCTCTTTCGTACTCTCAGCTATTGTTTCAAGAAACCGCACAAGACGT
ACATCGGTGACGTTCGTTGCGATGCAGGGAGGGTGTTTGATTATCCATCT
TACTTTGTAACCGTTGGCTTATCCACTACGGTGTAACTGCCGTTGTTGGG
AAATTATTCAGTGATGTTGGAACTCCTAGAAGTTGCCTTCATCACCGAAT
AATTTCCCAACAACGGAAGTGGATAAGCCAACGGTTACAAAGTAAGATGG
ATAATCAAACAGGGGGAGATGCGGCCACGCCGAAAAGAAAAAGAAGAAAT
GCGTCACTGGACAGAGGAGGCAGGAAGCAAGAGTAATACTACTACAGTGT
TAATAGTGCCGTACTTATTTTCGGCAAGCACTCTCTTCCTGGAGAAATGG
TTTCACGTTGTACCGTACTTATGTTCGGCAAGCACAATCATCCTGGAGAA
TTGGTTATAACAAAAAGCCTTTGAATACTTGGATTTGTTTAGTAACAACC
GTAGGACAGTACTGTTCCCCTTGTCGCGGTAATGTTCTTACCACAAGTGG
GGGCAGAGCGAAGGTCGATCGACAGCAATCGAGTTAGTTGATCTACTGCC
CGCTGCACAGGTGCTCGCTGTCCGATCTGGTGTTTGTATATTGACAGGAA
ACAATCGCGCGCAATCAAAGTGTACTGGGTATGTCATAGCGCAGTAATAT
ATTTTTTCGCCGTCTTCTCCACGAGGTGAGTGGTAATCGAATGCTGTTTA
GCTTCAACGTCGCCGTGGGGTTCCAGTTCAGTCTTCAATCTTGACTGTAT
TTTTTGGTTTTGCGGTCTCTTCGTGTATGAAATAATAATCGAAGGGGTTA
TGCTTGAGTTGATGTACGGAGCAGTTGCATCCCCCACACGAACACCCCTT
AAGAGGTTTTCACAAGACCGAGACAGTTCGTGCCGAACCTCCCTTGGAAC
CAAGACTTTTGTTTTGCATCCCCTCCCACCCCCCCCCTTTCCTCCCCATT
TCCCCTCCGTAAGCGTAAATAAAAACTAGTAAAATATATGAACCAATACC
CCAAAAGCAATGAGCATTTCCAGTTTTAGGGAAGGAAGGGCCATGCCTAC
TCATATAGCTGTGGCGTAGGAAGAAGATATGACCCGCATTAGCTCTGCGT
CGCGTGTCTACTCGATGTGGTTGTGTCATGGCCGTTCCTTGCCCCACCCT
CCCCTCCCCCATGTTCGTCCCTTGACTTCAGCTGATCGCTTTCACGCCTA
TGCGATAATCATGTTCCTCTCGACTTTCCCCGTGACGCGCACATGTTAAA
CAAAATACGCTCAGATCTCGCTTTTAAGTTTTATTTTCGACGTGATCACC
ATGAAGACCTTCCGGCCGCTCACTGTGACGGTTTTCCTTTCGACGGGGGG
GTATTGTGTCCTCCTCATTCAACGACCGAGGTGCCTCAACGAGGCCGATC
AAGGTGGGGAAAGGGTCGTAAAGCCTGCCCTACTATGTGCGAAAACCTCC
ATGATCGCTTCCGAGAGTCAAAACATTTTTAGAAGTCCCCCCGTCTTATT
TGAAGTGTGGTCAAATTGGTTTTGCTTAGGATTTGTTTTAAATGTTTTCC
CGTCGGTCGAGAGGGAATTGTTTCGGCCGCAAACGAACGAACGAGTGAAA
CTAGACATCTCTAATGGCACTTACTGTATACTATATTCGTAGGTAACTAG
GCCAATCGGTAAAAAAAAGTGACAACACATCCGAAGTTGCTGCCGGAATT
CGCTTCCAAGCTAAAGTTTCCGATTGTCGATATTTTTTGGGGATTTAGTA
GACTAGGATCGGACGGCAGACTAGAAGTAACACAATTTTAAGACTCGTGA
GTATTTTACTTCCTCCCCGGGGTTTCCGCTTTCGAATCAAAACATCATAC
CTGGTACCAGGTATGCGTTATTTGAATATAATATTTCGGCGCGGGACACA
TGTGGAGGGAAGACCTGGCAGTAATAGCATAATAATTATTTCTATATCTG
GAGCAACGCCTAATCTTCCAATGAGGTGTCAAGGTTTGGGAGAGTTATGT
GGGTTGGCCAAAGCTAAACCGCCATTCTGAACCGGGAACTTTTTGGGAGA
CATATTACTGGTTCGTAGATTCACAATTACGCCGTGTTGAGCCCTTCCAA
CAGCAATATTTCGTTATATGAACTAATACAGTGGCAACACATGTGGTAAA
ACCGTTACATGACTCGACACCCTCTTTTTCTTCCCCCACCGCGCGATAAC
AAAAACAATCGGCAGTGCTCGTGGAAATTATGGAGGCAACAGCGGCGGGT
GCCTCTGATAGAGTCATCACCAAGGAAGAGCGTCGATCGATGTTCCACTA
CTTCACCCTGCGCCCGCCGACCCCACTCGAAAACGCTTTCTCTTATGAGG
ACGCTCCCACCGGGGCCAGCACACTCTCCGGGGCAAGTACACCCTCCGGC
GATGGTGACGGGCGGGGAGCGGAGGATTTCTCCATGAAGGCTCTCGACCA
AAGTAGCTGGTACGGTGACGAGGCTGGAAGAGCCCAGAGTGGTCATCCCC
TGAATGCGACTGTTCCTTCGCGTGGCGCTCACCTTGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig903:331244..337231+

>mRNA_F-serratus_M_contig903.20460.1 ID=mRNA_F-serratus_M_contig903.20460.1|Name=mRNA_F-serratus_M_contig903.20460.1|organism=Fucus serratus male|type=CDS|length=1182bp|location=Sequence derived from alignment at F-serratus_M_contig903:331244..337231+ (Fucus serratus male)
ATGATCTTGCCGCCGCAGTCCGAGCGATGGCTGTCCGGGATCTTCAGGGC
GATTCCCAGCACCCAGCGCATACGTGCATTCGTACGGACTCCGGAGATGG
TGATCTTTCTTCTGGGGCTGGCCACCTTGATGATCTTGCCGCCGCAGTCC
GAGCGATGGCTGTCCGGGATCTTCAGGGCGATTCCCAGCACCCAGCGCAT
ACGTGCATTCGTACGGACTCCGGAGATGGTGATCTTTCTTCTGGGGCTGG
CCACCTTGATCTCGCTTTTAAGTTTTATTTTCGACGTGATCACCATGAAG
ACCTTCCGGCCGCTCACTGTGACGGTTTTCCTTTCGACGGGGGGGTATTG
TGTCCTCCTCATTCAACGACCGAGGTGCCTCAACGAGGCCGATCAAGATC
TCGCTTTTAAGTTTTATTTTCGACGTGATCACCATGAAGACCTTCCGGCC
GCTCACTGTGACGGTTTTCCTTTCGACGGGGGGGTATTGTGTCCTCCTCA
TTCAACGACCGAGGTGCCTCAACGAGGCCGATCAAGTGCTCGTGGAAATT
ATGGAGGCAACAGCGGCGGGTGCCTCTGATAGAGTCATCACCAAGGAAGA
GCGTCGATCGATGTTCCACTACTTCACCCTGCGCCCGCCGACCCCACTCG
AAAACGCTTTCTCTTATGAGGACGCTCCCACCGGGGCCAGCACACTCTCC
GGGGCAAGTACACCCTCCGGCGATGGTGACGGGCGGGGAGCGGAGGATTT
CTCCATGAAGGCTCTCGACCAAAGTAGCTGGTACGGTGACGAGGCTGGAA
GAGCCCAGAGTGGTCATCCCCTGAATGCGACTGTTCCTTCGCGTGGCGCT
CACCTTGGATGCTCGTGGAAATTATGGAGGCAACAGCGGCGGGTGCCTCT
GATAGAGTCATCACCAAGGAAGAGCGTCGATCGATGTTCCACTACTTCAC
CCTGCGCCCGCCGACCCCACTCGAAAACGCTTTCTCTTATGAGGACGCTC
CCACCGGGGCCAGCACACTCTCCGGGGCAAGTACACCCTCCGGCGATGGT
GACGGGCGGGGAGCGGAGGATTTCTCCATGAAGGCTCTCGACCAAAGTAG
CTGGTACGGTGACGAGGCTGGAAGAGCCCAGAGTGGTCATCCCCTGAATG
CGACTGTTCCTTCGCGTGGCGCTCACCTTGGA
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