prot_F-serratus_M_contig90.20390.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig90.20390.1
Unique Nameprot_F-serratus_M_contig90.20390.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length97
Homology
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: A0A835ZJ72_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ72_9STRA)

HSP 1 Score: 131 bits (330), Expect = 5.200e-38
Identity = 61/96 (63.54%), Postives = 74/96 (77.08%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 96
            MA +L ELQGK VS+IT DGR I+GN +G+DHTIN++L+ C ER+YS    VE V LGLYI RGDNIAVIGE DE AD  +DLS +RA P+KP+ H
Sbjct:    1 MATTLSELQGKPVSIITNDGRNIVGNFRGHDHTINVILDSCHERVYSTTAAVEVVPLGLYIVRGDNIAVIGELDEAADTERDLSSLRAVPIKPLAH 96          
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: D7FKG9_ECTSI (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG9_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.470e-37
Identity = 65/85 (76.47%), Postives = 69/85 (81.18%), Query Frame = 0
Query:   25 GNLKGYDHTINLVLEGCSERIYSQARGVEQ-------------VQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 96
            GNLKGYDHTINLVLEGC ERIYSQ+RGVEQ             VQLGLYICRGDNIAVIGE DE+ DASKDLSR+RA+PLKPVTH
Sbjct:   35 GNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVVQVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 119          
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: A0A5S6R3V4_TRIMR (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R3V4_TRIMR)

HSP 1 Score: 127 bits (320), Expect = 1.790e-36
Identity = 60/94 (63.83%), Postives = 74/94 (78.72%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPV 94
            MAA + + + KLVSVITGDGR ILGNLKG+D TINLVL+   ER+YS+ +G+E+VQLGLYI RGDN+A+IGE DE  D   DL+  RADPL P+
Sbjct:    1 MAAGIDQYKDKLVSVITGDGRHILGNLKGFDQTINLVLDEACERVYSKEQGIEEVQLGLYIIRGDNVAIIGEMDEEMDRRLDLTNTRADPLMPI 94          
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: A0A7I8VGN1_9ANNE (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VGN1_9ANNE)

HSP 1 Score: 123 bits (308), Expect = 1.170e-34
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 96
            M+ SL  L G++VSV+T DGR I+G LKGYD TIN++LE   ER++S   GVEQV LGLYI RGDN+AVIGE DE  D S DLS++ ADPL P++H
Sbjct:    1 MSGSLDTLVGRVVSVLTNDGRLIVGMLKGYDQTINIILEDSHERVFSATSGVEQVALGLYIVRGDNVAVIGEIDEEHDKSIDLSKICADPLNPISH 96          
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: A0A8B7Z2R1_ACAPL (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Asteroidea TaxID=7588 RepID=A0A8B7Z2R1_ACAPL)

HSP 1 Score: 122 bits (306), Expect = 2.360e-34
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 96
            MA+ L+      VSVIT DGRQI+G LKG+D TINL+L+   ER+Y+ A GVEQV LGLYI RGDNIA+IGE DE  D++ DLS V+A+PL PV H
Sbjct:    1 MASGLESYINHTVSVITNDGRQIVGTLKGFDQTINLILDESHERVYNSASGVEQVVLGLYIIRGDNIAIIGEIDEETDSALDLSNVKAEPLNPVVH 96          
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: W7TRW1_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRW1_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.810e-34
Identity = 57/96 (59.38%), Postives = 75/96 (78.12%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 96
            MAA+L++L+ +++ VIT DGR I+G LKG+D T N++L+ C ER++S   GVEQV LGLYI RGDNIAV+GE DE ADA+ DLS ++ D LKPV H
Sbjct:   25 MAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120          
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: A0A6P6YHQ5_DERPT (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Pyroglyphidae TaxID=6952 RepID=A0A6P6YHQ5_DERPT)

HSP 1 Score: 120 bits (301), Expect = 1.360e-33
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 96
            MA +L+   G+ VSVIT DGRQI+G LKG+D TIN+++E C ER+YS + GVEQV LGLYI RGDN+AV+GE DE  D   + S +RA+PL PV H
Sbjct:    1 MANNLESYVGRTVSVITVDGRQIVGTLKGFDQTINIIMEECHERVYSVSAGVEQVFLGLYIIRGDNVAVVGEIDEELDKKVNYSIIRAEPLNPVVH 96          
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: UPI0006B0C9FC (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0C9FC)

HSP 1 Score: 120 bits (300), Expect = 1.940e-33
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 96
            MAASL+      VSVIT DGR I+G LKG+D TINL+L+   ER+YS + GVEQV LGLYI RGDN+AVIGE D+  D   DLS ++A+PL PV H
Sbjct:    1 MAASLESYVNHTVSVITADGRNIVGTLKGFDQTINLILDESHERVYSSSHGVEQVVLGLYIIRGDNVAVIGELDDDLDERLDLSSIKAEPLNPVVH 96          
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: UPI0014259F6A (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259F6A)

HSP 1 Score: 120 bits (300), Expect = 1.940e-33
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 96
            MA +++      VSVIT DGR I+G LKG+D T+NL+L+   ER++S A+GVEQV LGLYI RGDNIAVIGE D+  D+S D+S +RA+PL PV H
Sbjct:    1 MATAIESYVNHTVSVITNDGRVIVGTLKGFDQTVNLILDESHERVFSSAQGVEQVLLGLYIIRGDNIAVIGEIDDETDSSMDMSNIRAEPLNPVVH 96          
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Match: A0A7R9Y9D5_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9D5_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.680e-33
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 0
Query:    1 MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH 96
            MA +LQ+     V +IT DGR I+GNL+GYD T NL+LE C ERI++   GVE+V LGLYI RGDN+AVIGE DE    + DLS +RA PLKP+ H
Sbjct:   12 MAGALQDWLNHAVCIITNDGRNIVGNLRGYDQTTNLILENCHERIFAPDEGVEEVPLGLYIIRGDNVAVIGELDEAMSQALDLSAIRAQPLKPLVH 107          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig90.20390.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZJ72_9STRA5.200e-3863.54U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=T... [more]
D7FKG9_ECTSI1.470e-3776.47U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=E... [more]
A0A5S6R3V4_TRIMR1.790e-3663.83U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=T... [more]
A0A7I8VGN1_9ANNE1.170e-3461.46U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=D... [more]
A0A8B7Z2R1_ACAPL2.360e-3461.46U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=A... [more]
W7TRW1_9STRA4.810e-3459.38U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=M... [more]
A0A6P6YHQ5_DERPT1.360e-3359.38U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=P... [more]
UPI0006B0C9FC1.940e-3360.42U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=L... [more]
UPI0014259F6A1.940e-3358.33U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=A... [more]
A0A7R9Y9D5_9STRA2.680e-3358.33U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 3..72
e-value: 5.2E-17
score: 72.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 4..71
e-value: 2.0E-17
score: 62.6
NoneNo IPR availableGENE3D2.30.30.100coord: 2..95
e-value: 1.1E-22
score: 82.1
NoneNo IPR availablePANTHERPTHR15588:SF9U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8coord: 9..96
NoneNo IPR availablePANTHERPTHR15588LSM1coord: 9..96
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig90contigF-serratus_M_contig90:212432..214236 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig90.20390.1mRNA_F-serratus_M_contig90.20390.1Fucus serratus malemRNAF-serratus_M_contig90 211709..214236 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig90.20390.1 ID=prot_F-serratus_M_contig90.20390.1|Name=mRNA_F-serratus_M_contig90.20390.1|organism=Fucus serratus male|type=polypeptide|length=97bp
MAASLQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCSERIYSQAR
GVEQVQLGLYICRGDNIAVIGEFDEIADASKDLSRVRADPLKPVTH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf