prot_F-serratus_M_contig9.20381.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig9.20381.1
Unique Nameprot_F-serratus_M_contig9.20381.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length455
Homology
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: D8LAX1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX1_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 3.000e-40
Identity = 137/394 (34.77%), Postives = 173/394 (43.91%), Query Frame = 0
Query:   48 VAITAQIYLFAVVVAVYPDSNQDGVTQINREAFASFPFDSTTRLVRRTSSAMRPAVGWKVVPCRASHA------PSASATDTPEMTPLPDISSVAALSDCQGGGFRVENVQETRQAGSEEGGGNLVGAFADLNGTARSSSSTSTASRISRKAPAET-RVCERIDALGTVEGSEGGGDEVGSRAVAAAGESEGADSPRNVQCHR---------PIYYRNSPPMHPARHTPQHILQ----------------ELGGEGGGHD----CARS-----------FAREPWQTSSGRDSDEGTDPETVEFRPNPDTSRGASSQGEAIEDDIRGAIRDRSMVRVSELPDVCAICLGKYSAGERVHVLPCLHIFHAECLDVWIVSHPSCPYCKDNLNILPPE 394
            VA+ +Q YL A+ V++ PD    GVTQINREAFASFPFD+T  LVRR  S  RP VGW+V   +   A      P A  T TP            A +DCQ G       Q     G   G   +V A A   G+  +    + A  +      +T  +      +G V G  G     G+  +A++     A +    QC           P+         P    P H  +                ELG   G HD    C R             ++E    SS   S +   P       N DT+             +R    D ++VRVSELPDVCAICLG+Y+ GE VHVLPCLHIFHAECLDVWI  HPSCPYCK +LN++P E
Sbjct:    2 VAVVSQGYLCAIFVSIPPDPKPRGVTQINREAFASFPFDATASLVRRKGSGTRPPVGWEVKSSQQLAASLRHPDPGAPGTTTPFGRD--------AAADCQAGALVAGQAQRRSGGGDIAGFRKVVPAGAGAVGSMETRECKAAAGAVRSPKSGDTLHMLAPPSDIGLV-GRGGARGVFGTARIASSDARAAAAAAAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHSTRGPHAHGENGEKHLEGGELGESLGKHDHFSACHRHRHCXXXXFHQHLSQEMKVCSSWTGSAQTDAPSIGSDDDNDDTA-------------VRLRANDETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQE 373          
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: A0A6H5JT04_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT04_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.730e-26
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0
Query:  331 DRSMVRVSELPDVCAICLGKYSAGERVHVLPCLHIFHAECLDVWIVSHPSCPYCKDNLNILPPE 394
            D ++VRVSELPDVCAICLG+Y+ GE VHVLPCLHIFHAECLDVWI  HPSCPYCK +LN++P E
Sbjct:  404 DETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWICGHPSCPYCKGDLNVIPQE 467          
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: R0GM05_9BRAS (RING-type domain-containing protein n=1 Tax=Capsella rubella TaxID=81985 RepID=R0GM05_9BRAS)

HSP 1 Score: 73.6 bits (179), Expect = 7.680e-12
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 0
Query:  344 CAICLGKYSAGERVHVLP-CLHIFHAECLDVWIVSHPSCPYCKDNLNILPP 393
            CAICLG+++ GERV VLP C H FH  C+D W++SH SCPYC+ +L  +PP
Sbjct:  107 CAICLGEFADGERVRVLPPCNHSFHVSCIDTWLLSHSSCPYCRHSL--IPP 155          
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: A0A175YIW7_DAUCS (RING-type domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YIW7_DAUCS)

HSP 1 Score: 73.6 bits (179), Expect = 1.380e-11
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 0
Query:  344 CAICLGKYSAGERVHVLP-CLHIFHAECLDVWIVSHPSCPYCKDNLNILPPECEVNERRDNARRYALHFVSIA 415
            C ICLG++  GE+V VLP CLH FH +C+D W+VSH SCP C++ L  +P     ++ R  +   + H +S+A
Sbjct:  109 CPICLGEFLDGEKVRVLPDCLHNFHVKCIDKWLVSHSSCPNCRNLLIDIPNSGVADQNRSFSDNNSGHRISVA 181          
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: A0A3B5ZXE1_WHEAT (RING-type domain-containing protein n=9 Tax=Triticeae TaxID=147389 RepID=A0A3B5ZXE1_WHEAT)

HSP 1 Score: 73.6 bits (179), Expect = 1.760e-11
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 0
Query:  310 TSRGASSQGEAIEDDIRGAIRDRSMVRVSELPDVCAICLGKYSAGERVHVLP-CLHIFHAECLDVWIVSHPSCPYCK 385
            T+RGAS  G  I+  +  ++          + DVCAICLG++  GE+V VLP C H FH  C+D W+VSH SCP C+
Sbjct:   89 TARGASRGGSGIKRRVLRSLPVEVYGSGEVIDDVCAICLGEFVDGEKVRVLPRCAHGFHVRCVDAWLVSHGSCPTCR 165          
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: A0A453FU13_AEGTS (RING-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FU13_AEGTS)

HSP 1 Score: 72.8 bits (177), Expect = 2.210e-11
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
Query:  342 DVCAICLGKYSAGERVHVLP-CLHIFHAECLDVWIVSHPSCPYCKDNL 388
            DVCAICLG++  GE+V VLP C H FH  C+D W+VSH SCP C+D++
Sbjct:   99 DVCAICLGEFEDGEKVRVLPRCGHEFHVRCVDTWLVSHDSCPTCRDSV 146          
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: A0A8C3ZMD8_9TELE (RING-type domain-containing protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZMD8_9TELE)

HSP 1 Score: 69.7 bits (169), Expect = 3.220e-11
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 0
Query:  344 CAICLGKYSAGERVHVLPCLHIFHAECLDVWIVSHPSCPYCKDNL 388
            C ICL +Y+AGE + VLPCLH FHAEC+D W+  +PSCP C+ ++
Sbjct:   47 CRICLCEYTAGEELRVLPCLHDFHAECVDRWLQQNPSCPICRADV 91          
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: A0A3B6FRK9_WHEAT (RING-type domain-containing protein n=6 Tax=Triticum TaxID=4564 RepID=A0A3B6FRK9_WHEAT)

HSP 1 Score: 72.8 bits (177), Expect = 3.930e-11
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
Query:  342 DVCAICLGKYSAGERVHVLP-CLHIFHAECLDVWIVSHPSCPYCKDNL 388
            DVCAICLG++  GE+V VLP C H FH  C+D W+VSH SCP C+D++
Sbjct:  128 DVCAICLGEFEDGEKVRVLPRCGHEFHVRCVDTWLVSHDSCPTCRDSV 175          
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: F2DIX4_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2DIX4_HORVV)

HSP 1 Score: 72.4 bits (176), Expect = 4.510e-11
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
Query:  342 DVCAICLGKYSAGERVHVLP-CLHIFHAECLDVWIVSHPSCPYCKDNL 388
            DVCAICLG++  GE+V VLP C H FH  C+D W+VSH SCP C+D++
Sbjct:  120 DVCAICLGEFEDGEKVRVLPRCGHEFHVRCVDTWLVSHGSCPTCRDSV 167          
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: A0A4Y1RQH7_PRUDU (RING-type E3 ubiquitin transferase n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RQH7_PRUDU)

HSP 1 Score: 70.1 bits (170), Expect = 5.690e-11
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 0
Query:  337 VSELPD-VCAICLGKYSAGERVHVLP-CLHIFHAECLDVWIVSHPSCPYCKDNLNILPPECEV 397
            V E+ D +CA+CL ++  GE + VLP C+H+FHAEC+D+W+ SH +CP C+ ++   PP   V
Sbjct:   51 VEEIKDGICAVCLCEFKDGEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIE--PPPQHV 111          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAX1_ECTSI3.000e-4034.77RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JT04_9PHAE2.730e-2678.13RING-type domain-containing protein n=1 Tax=Ectoca... [more]
R0GM05_9BRAS7.680e-1258.82RING-type domain-containing protein n=1 Tax=Capsel... [more]
A0A175YIW7_DAUCS1.380e-1143.84RING-type domain-containing protein n=1 Tax=Daucus... [more]
A0A3B5ZXE1_WHEAT1.760e-1145.45RING-type domain-containing protein n=9 Tax=Tritic... [more]
A0A453FU13_AEGTS2.210e-1160.42RING-type domain-containing protein n=1 Tax=Aegilo... [more]
A0A8C3ZMD8_9TELE3.220e-1157.78RING-type domain-containing protein n=1 Tax=Dentic... [more]
A0A3B6FRK9_WHEAT3.930e-1160.42RING-type domain-containing protein n=6 Tax=Tritic... [more]
F2DIX4_HORVV4.510e-1160.42Predicted protein n=1 Tax=Hordeum vulgare subsp. v... [more]
A0A4Y1RQH7_PRUDU5.690e-1146.03RING-type E3 ubiquitin transferase n=1 Tax=Prunus ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 344..384
e-value: 6.1E-6
score: 35.7
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 343..385
e-value: 1.4E-12
score: 47.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 344..385
score: 11.988
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 333..392
e-value: 1.9E-16
score: 61.0
NoneNo IPR availablePANTHERPTHR45798:SF38coord: 342..392
NoneNo IPR availablePANTHERPTHR45798FAMILY NOT NAMEDcoord: 342..392
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..35
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 65..454
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..64
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 336..391
NoneNo IPR availableTMHMMTMhelixcoord: 36..58
NoneNo IPR availableTMHMMTMhelixcoord: 4..23

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig9contigF-serratus_M_contig9:1396780..1400631 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig9.20381.1mRNA_F-serratus_M_contig9.20381.1Fucus serratus malemRNAF-serratus_M_contig9 1394837..1400719 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig9.20381.1 ID=prot_F-serratus_M_contig9.20381.1|Name=mRNA_F-serratus_M_contig9.20381.1|organism=Fucus serratus male|type=polypeptide|length=455bp
MNWTIFVLVGSGLLFTAGLAWFFTEAWVFAVRTHTIWLIILLTITSTVAI
TAQIYLFAVVVAVYPDSNQDGVTQINREAFASFPFDSTTRLVRRTSSAMR
PAVGWKVVPCRASHAPSASATDTPEMTPLPDISSVAALSDCQGGGFRVEN
VQETRQAGSEEGGGNLVGAFADLNGTARSSSSTSTASRISRKAPAETRVC
ERIDALGTVEGSEGGGDEVGSRAVAAAGESEGADSPRNVQCHRPIYYRNS
PPMHPARHTPQHILQELGGEGGGHDCARSFAREPWQTSSGRDSDEGTDPE
TVEFRPNPDTSRGASSQGEAIEDDIRGAIRDRSMVRVSELPDVCAICLGK
YSAGERVHVLPCLHIFHAECLDVWIVSHPSCPYCKDNLNILPPECEVNER
RDNARRYALHFVSIAEWPLEWFREHLVQGRERMRADVGAAPTAGGVVADA
TLGL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD