prot_F-serratus_M_contig9.20353.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig9.20353.1
Unique Nameprot_F-serratus_M_contig9.20353.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length739
Homology
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BLAST of mRNA_F-serratus_M_contig9.20353.1 vs. uniprot
Match: D8LB00_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB00_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.970e-24
Identity = 60/110 (54.55%), Postives = 72/110 (65.45%), Query Frame = 0 
Query:  116 HPWAVARAQRKVAKREDEVGADFGRRRGPFMERLQVARMRGDCAGAKRVLVEAISQPGIVDISMYNAALMPSVDKGEWRTTLEIMEQMREAGVVPDEVTYTLAIKACGNG 225
            HPW  AR +R+  + +     DFGRRRGPFM RLQ A MR DC  A+RVL +A+  PG+VD  M NA L      G W+  LE+M QMREAG+ PD +TYT AIKACG G
Sbjct:  153 HPWVAARLRRESMRAKKSRTPDFGRRRGPFMRRLQQAGMRRDCDEAERVLRQALECPGVVDTVMCNAVLNTFAADGRWQVVLEVMRQMREAGLTPDALTYTNAIKACGKG 262
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20353.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB00_ECTSI1.970e-2454.55PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 454..574
e-value: 1.3E-29
score: 104.9
coord: 609..733
e-value: 9.7E-25
score: 88.9
coord: 145..292
e-value: 3.4E-30
score: 106.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 295..446
e-value: 7.9E-39
score: 135.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 381..428
e-value: 5.0E-10
score: 39.4
coord: 452..498
e-value: 1.6E-9
score: 37.8
coord: 316..362
e-value: 4.7E-8
score: 33.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 175..224
e-value: 1.4E-5
score: 25.1
coord: 233..294
e-value: 2.6E-10
score: 40.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 213..247
e-value: 4.7E-7
score: 27.6
coord: 419..452
e-value: 1.5E-6
score: 26.0
coord: 253..281
e-value: 0.0014
score: 16.6
coord: 319..352
e-value: 1.4E-4
score: 19.8
coord: 284..315
e-value: 4.3E-5
score: 21.4
coord: 454..487
e-value: 5.9E-7
score: 27.3
coord: 602..626
e-value: 3.9E-4
score: 18.4
coord: 490..523
e-value: 3.2E-5
score: 21.8
coord: 671..703
e-value: 6.2E-4
score: 17.8
coord: 384..418
e-value: 2.3E-4
score: 19.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 599..629
score: 8.616
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 281..315
score: 11.082
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 417..451
score: 11.093
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 557..598
score: 5.623
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 523..556
score: 7.728
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 487..521
score: 8.681
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 316..350
score: 9.745
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 382..416
score: 10.008
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 351..381
score: 6.566
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 211..245
score: 11.466
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 633..667
score: 10.457
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 668..702
score: 8.824
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 176..210
score: 9.229
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 246..280
score: 10.019
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 452..486
score: 11.531
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 539..706
e-value: 4.8E-10
score: 39.2
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 378..570
coord: 290..428
coord: 634..730
coord: 176..315
coord: 582..644
coord: 232..386

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig9contigF-serratus_M_contig9:574818..577034 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig9.20353.1mRNA_F-serratus_M_contig9.20353.1Fucus serratus malemRNAF-serratus_M_contig9 574217..586733 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig9.20353.1 ID=prot_F-serratus_M_contig9.20353.1|Name=mRNA_F-serratus_M_contig9.20353.1|organism=Fucus serratus male|type=polypeptide|length=739bp
MNPVRSASVAVKALNRASRRLSQIGTISRTNSRGAEFFTAVSCTSLRALS
AVASSRDAISIIVGLDEESETSSARILENGDGAGGFESERVRADSKPLST
PKISGSAEASISVDAHPWAVARAQRKVAKREDEVGADFGRRRGPFMERLQ
VARMRGDCAGAKRVLVEAISQPGIVDISMYNAALMPSVDKGEWRTTLEIM
EQMREAGVVPDEVTYTLAIKACGNGCRWKEALSLLRDMPAKGVSPNVIHF
VSAMTACGKSGRGSEAVQLLRAMSQAGVAPNLLSYNSAISACGAERLTDE
AVTLLREMPKVGIQPVVQTFNLCLKALSHRGEWELAVELLAEMNSRGPKP
NVWTYHHCMRACGNGGNWQLAIDLLRDIPSPSIVSYNVAIMACANNRQGR
QAANLLNEMRTMGVDPDAISYTSAIKALGNSRMWREAIELLQRMRRAGIP
RDDVSYTSAIKACAQSRQWSVALDLLREMKDEGTVPSARTYTACIKACGD
GGQSKKALALFREMPVVTGVPPSVISYTAAIAACGGELLEEALGLLREMK
QAGVTPNKRTYLACIVACCDVRCDVVKSCLGERAISLLREMGSVGLTPDM
ACYTAAIKVCGKQGRWQDALALFREIAGKITPDLKAWNTCLQACGDSRAC
EQAMVLLREMKEEGVMPGLFAYNAALMACMDGGHDEKVLDLLREMRCRSI
SPNSKTFESATAACREGASRVEAEQLLKNMAFRVTSCD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long