prot_F-serratus_M_contig88.20161.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig88.20161.1
Unique Nameprot_F-serratus_M_contig88.20161.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length169
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20161.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 53..79
e-value: 1.1E-5
score: 35.0
coord: 18..44
e-value: 2.5E-4
score: 30.4
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 18..45
score: 14.568
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 53..80
score: 15.525
IPR032297Torus domainPFAMPF16131Toruscoord: 8..46
e-value: 5.7E-7
score: 30.2
IPR041367E3 ligase, CCCH-type zinc fingerPFAMPF18044zf-CCCH_4coord: 58..78
e-value: 5.6E-9
score: 35.6
NoneNo IPR availableGENE3D4.10.1000.10coord: 50..102
e-value: 5.0E-7
score: 31.6
NoneNo IPR availableGENE3D4.10.1000.10coord: 8..49
e-value: 3.9E-6
score: 28.6
NoneNo IPR availablePANTHERPTHR11224MAKORIN-RELATEDcoord: 22..105
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 54..78
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 20..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:452866..480097 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20161.1mRNA_F-serratus_M_contig88.20161.1Fucus serratus malemRNAF-serratus_M_contig88 452866..480098 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig88.20161.1 ID=prot_F-serratus_M_contig88.20161.1|Name=mRNA_F-serratus_M_contig88.20161.1|organism=Fucus serratus male|type=polypeptide|length=169bp
GFGVGWRESGTGQEDQGTRRDSACIYFQRGHCSKGDLCPYRHDVPAGEGG
GGDQGREICRNFQVGNCIYGDKCRYIHDFNPSQYGDRAKGSGGFMTNDAA
GAPRLEKDGFGGGGGFGTRGGLDKSQTAPNIGGSGGGGGFGSSVRFGSGG
GFDLDKSQTAPNVGDSRGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR032297Torus
IPR041367Znf-CCCH_4
IPR036855Znf_CCCH_sf