prot_F-serratus_M_contig869.20049.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig869.20049.1
Unique Name	prot_F-serratus_M_contig869.20049.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	94

Homology

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BLAST of mRNA_F-serratus_M_contig869.20049.1 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 6.030e-56
Identity = 90/93 (96.77%), Postives = 93/93 (100.00%), Query Frame = 0

Query:    1 MSSAVEEPLDLIRLSLDERIYVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRTT 93
            MSS+VEEPLDLIRLSLDERI+VKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPP+RTT
Sbjct:    1 MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT 93

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BLAST of mRNA_F-serratus_M_contig869.20049.1 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA)

HSP 1 Score: 164 bits (415), Expect = 7.550e-51
Identity = 82/93 (88.17%), Postives = 89/93 (95.70%), Query Frame = 0

Query:    1 MSSAVEEPLDLIRLSLDERIYVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRTT 93
            ++ +VEEPLDLIRLSLDERIYVKCRG+RELRGKLH+YDQHLNMVLGDVEETVTT E+DEDT EEI+RTSKR IEMLFVRGDVVILVSPPLRTT
Sbjct:   17 VTMSVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEDTSEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 109

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BLAST of mRNA_F-serratus_M_contig869.20049.1 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.740e-50
Identity = 82/90 (91.11%), Postives = 87/90 (96.67%), Query Frame = 0

Query:    4 AVEEPLDLIRLSLDERIYVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRTT 93
            +VEEPLDLIRLSLDERIYVKCRG+RELRGKLH+YDQHLNMVLGDVEETVTT E+DEDT EEI+RTSKR IEMLFVRGDVVILVSPPLRTT
Sbjct:   13 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 102

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BLAST of mRNA_F-serratus_M_contig869.20049.1 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.800e-48
Identity = 76/92 (82.61%), Postives = 90/92 (97.83%), Query Frame = 0

Query:    1 MSSAVEEPLDLIRLSLDERIYVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 92
            MSS+V+EPLDLIRLSL+ERIYVKCRGERELRGKLH++D+HLNM+LG+VEETVTT E+DE+T EEI+RTS+R++EMLFVRGDVVILVSPPLRT
Sbjct:    1 MSSSVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDRHLNMILGEVEETVTTPEIDEETDEEIIRTSRRTVEMLFVRGDVVILVSPPLRT 92

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BLAST of mRNA_F-serratus_M_contig869.20049.1 vs. uniprot
Match: A0A0M0JVC1_9EUKA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVC1_9EUKA)

HSP 1 Score: 153 bits (387), Expect = 8.850e-47
Identity = 75/91 (82.42%), Postives = 86/91 (94.51%), Query Frame = 0

Query:    2 SSAVEEPLDLIRLSLDERIYVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 92
            S+ V+EP+DL+RLSLDERI+VK RG+RELRGKLH+YDQHLNMVLGDVEE VTTVEVDE+TYEEI++TSKR IEMLFVRGD VIL+SPPLRT
Sbjct:    3 STLVKEPIDLVRLSLDERIHVKMRGDRELRGKLHAYDQHLNMVLGDVEEVVTTVEVDEETYEEIIKTSKRQIEMLFVRGDGVILISPPLRT 93

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BLAST of mRNA_F-serratus_M_contig869.20049.1 vs. uniprot
Match: K3ZB54_SETIT (U6 snRNA-associated Sm-like protein LSm3 n=9 Tax=Poaceae TaxID=4479 RepID=K3ZB54_SETIT)

HSP 1 Score: 153 bits (387), Expect = 9.700e-47
Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = 0

Query:    4 AVEEPLDLIRLSLDERIYVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 92
            AV+EPLDLIRLSLDERIYVK R ERELRGKLH+YDQHLNM+LGDVEETVTTVE+D++TYEEIVRTSKR+I  LFVRGD VILVSPPLRT
Sbjct:    8 AVKEPLDLIRLSLDERIYVKLRSERELRGKLHAYDQHLNMILGDVEETVTTVEIDDETYEEIVRTSKRTIPFLFVRGDGVILVSPPLRT 96

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BLAST of mRNA_F-serratus_M_contig869.20049.1 vs. uniprot
Match: A0A2G5DC99_AQUCA (U6 snRNA-associated Sm-like protein LSm3 n=3 Tax=Ranunculaceae TaxID=3440 RepID=A0A2G5DC99_AQUCA)

HSP 1 Score: 152 bits (383), Expect = 3.950e-46
Identity = 73/90 (81.11%), Postives = 86/90 (95.56%), Query Frame = 0

Query:    3 SAVEEPLDLIRLSLDERIYVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 92
            SAV+EPLDLIRLSLDERIYVK R +RELRG+LH+YDQHLNM+LGDVEET+TTVE+D++TYEEIVRT+KR+++ LFVRGD VILVSPPLRT
Sbjct:    7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRNVQFLFVRGDGVILVSPPLRT 96

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BLAST of mRNA_F-serratus_M_contig869.20049.1 vs. uniprot
Match: A0A8J5XN36_DIALT (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XN36_DIALT)

HSP 1 Score: 151 bits (382), Expect = 5.440e-46
Identity = 75/91 (82.42%), Postives = 84/91 (92.31%), Query Frame = 0

Query:    2 SSAVEEPLDLIRLSLDERIYVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 92
            S  VEEPLDLIRLSLDER+YVK R ERELRG+LH+YDQHLNMVLGDV+ETVTT ++D +TYEEI++TSKRSIEMLFVRGD VILVSPPLRT
Sbjct:    5 SQVVEEPLDLIRLSLDERVYVKLRNERELRGRLHAYDQHLNMVLGDVDETVTTRDIDTETYEEIIKTSKRSIEMLFVRGDGVILVSPPLRT 95

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BLAST of mRNA_F-serratus_M_contig869.20049.1 vs. uniprot
Match: R1DJQ4_EMIHU (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Eukaryota TaxID=2759 RepID=R1DJQ4_EMIHU)

HSP 1 Score: 151 bits (381), Expect = 7.060e-46
Identity = 73/93 (78.49%), Postives = 87/93 (93.55%), Query Frame = 0

Query:    1 MSSAVEEPLDLIRLSLDERIYVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRTT 93
            MSS V EPLDL+RLSLDERI VK RG+R+LRG+LH++DQHLNMVLG+VEETVTT+EVDE+TYEEI++TSKR I+MLFVRGD V+LVSPPLRT+
Sbjct:    1 MSSVVAEPLDLVRLSLDERILVKLRGDRDLRGRLHAFDQHLNMVLGEVEETVTTIEVDEETYEEIIKTSKRQIDMLFVRGDGVVLVSPPLRTS 93

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BLAST of mRNA_F-serratus_M_contig869.20049.1 vs. uniprot
Match: A0A383W7B2_TETOB (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W7B2_TETOB)

HSP 1 Score: 151 bits (381), Expect = 7.500e-46
Identity = 71/90 (78.89%), Postives = 85/90 (94.44%), Query Frame = 0

Query:    3 SAVEEPLDLIRLSLDERIYVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 92
            + V+EPLDLI+LSLDERIYVKCRGERELRG+LH+YDQHLNM+LG+VEETVTTVE+D++TYEEI++T KRSI  LFVRGD VIL+SPPLR+
Sbjct:    6 ATVKEPLDLIKLSLDERIYVKCRGERELRGRLHAYDQHLNMILGEVEETVTTVEIDDETYEEIIKTQKRSIPFLFVRGDSVILISPPLRS 95

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig869.20049.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig869.20049.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FXS6_ECTSI	6.030e-56	96.77	U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E...	[more]
A0A7S2FJT0_9STRA	7.550e-51	88.17	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=F...	[more]
A0A7S2GP21_9STRA	1.740e-50	91.11	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D...	[more]
A0A4D9CUN8_9STRA	1.800e-48	82.61	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=N...	[more]
A0A0M0JVC1_9EUKA	8.850e-47	82.42	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=C...	[more]
K3ZB54_SETIT	9.700e-47	86.52	U6 snRNA-associated Sm-like protein LSm3 n=9 Tax=P...	[more]
A0A2G5DC99_AQUCA	3.950e-46	81.11	U6 snRNA-associated Sm-like protein LSm3 n=3 Tax=R...	[more]
A0A8J5XN36_DIALT	5.440e-46	82.42	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D...	[more]
R1DJQ4_EMIHU	7.060e-46	78.49	U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E...	[more]
A0A383W7B2_TETOB	7.500e-46	78.89	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 10..88 e-value: 5.1E-21 score: 85.8
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 12..88 e-value: 3.9E-20 score: 71.3
None	No IPR available	GENE3D	2.30.30.100		coord: 1..90 e-value: 1.9E-30 score: 106.5
None	No IPR available	PANTHER	PTHR13110:SF11		coord: 2..92
IPR040002	U6 snRNA-associated Sm-like protein Lsm3	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 2..92
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 7..89

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig869	contig	F-serratus_M_contig869:119813..131083 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig869.20049.1	mRNA_F-serratus_M_contig869.20049.1	Fucus serratus male	mRNA	F-serratus_M_contig869 119706..132777 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig869.20049.1 ID=prot_F-serratus_M_contig869.20049.1|Name=mRNA_F-serratus_M_contig869.20049.1|organism=Fucus serratus male|type=polypeptide|length=94bp
MSSAVEEPLDLIRLSLDERIYVKCRGERELRGKLHSYDQHLNMVLGDVEE
TVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRTT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR040002	Sm-like_LSM3
IPR010920	LSM_dom_sf