prot_F-serratus_M_contig848.19860.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig848.19860.1
Unique Nameprot_F-serratus_M_contig848.19860.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length116
Homology
BLAST of mRNA_F-serratus_M_contig848.19860.1 vs. uniprot
Match: D8LL81_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL81_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 3.500e-72
Identity = 98/115 (85.22%), Postives = 107/115 (93.04%), Query Frame = 0
Query:    1 MPWPFCPTCGTVLDPAESGNILCDHCGLRTSYESFGDVEVVTKSQDRPLPEWLIQLQRKGPKQELQRATVEEVCPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 115
            MPWPFCP+CG+VLDP ESG+ILCDHC LR SYESFG+VEVVT+SQ+R  PEWL+Q+QRKG KQELQRATVEE CPKCGHPKMEFYTMQLRSADEGQTVFYECLSK CKHKY+VNN
Sbjct:    1 MPWPFCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115          
BLAST of mRNA_F-serratus_M_contig848.19860.1 vs. uniprot
Match: A0A836CG05_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG05_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.330e-52
Identity = 73/115 (63.48%), Postives = 93/115 (80.87%), Query Frame = 0
Query:    1 MPWPFCPTCGTVLDPAESGNILCDHCGLRTSYESFGDVEVVTKSQDRPLPEWLIQLQRKGPKQELQRATVEEVCPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 115
            M WPFCPTCG VL   E G++ C +C    ++ESFG VE++T+S  RPLP W+ +L+ KG +++ +RATV+E CPKCGHP+MEFYTMQLRSADEGQTVFYECL+K C+HK+SVNN
Sbjct:    1 MTWPFCPTCGAVLALPEYGDVECGNCKAEMTFESFGKVELITQSAPRPLPRWVEELENKGIREKQKRATVDEQCPKCGHPEMEFYTMQLRSADEGQTVFYECLNKNCQHKFSVNN 115          
BLAST of mRNA_F-serratus_M_contig848.19860.1 vs. uniprot
Match: A0A2D4BKP7_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN)

HSP 1 Score: 139 bits (350), Expect = 2.180e-40
Identity = 67/115 (58.26%), Postives = 84/115 (73.04%), Query Frame = 0
Query:    5 FCPTCGTVLDPAESGNILCDHCGLRTSYESFGDVEVVTKSQDRPLPEWLIQLQR----KGPKQELQRATVEEVCPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 115
            FCP CGT+LD  ++ NI+C  C  R +YE+   + VVT S+++P+P+WL   Q     KGP     RATVEE CPKCG+P+M++YTMQLRSADEGQTVFYEC  KKC HK+SVNN
Sbjct:   14 FCPHCGTILDHPDTNNIVCSSCEYRCTYENLPSLSVVTCSEEKPVPKWLKTEQSVNEVKGPA----RATVEETCPKCGNPEMDYYTMQLRSADEGQTVFYEC--KKCGHKFSVNN 122          
BLAST of mRNA_F-serratus_M_contig848.19860.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL)

HSP 1 Score: 134 bits (338), Expect = 1.600e-38
Identity = 63/111 (56.76%), Postives = 78/111 (70.27%), Query Frame = 0
Query:    5 FCPTCGTVLDPAESGNILCDHCGLRTSYESFGDVEVVTKSQDRPLPEWLIQLQRKGPKQELQRATVEEVCPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 115
            FCP CGT+LD  ++ NI+C  C  R  Y+    + VVT+S+DRPLP+WL             RATVEE CPKC +P+M++YT+QLRSADEGQTVFYEC  KKC HK+SVNN
Sbjct:   17 FCPHCGTILDHPDTNNIVCSACEYRCRYQDLPSLSVVTQSEDRPLPKWLDAKVGMSEVTGPARATVEETCPKCENPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125          
BLAST of mRNA_F-serratus_M_contig848.19860.1 vs. uniprot
Match: M4BZT8_HYAAE (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BZT8_HYAAE)

HSP 1 Score: 134 bits (337), Expect = 2.270e-38
Identity = 62/115 (53.91%), Postives = 82/115 (71.30%), Query Frame = 0
Query:    5 FCPTCGTVLDPAESGNILCDHCGLRTSYESFGDVEVVTKSQDRPLPEWL----IQLQRKGPKQELQRATVEEVCPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 115
            FCP CGT+LD  ++ +I+C  C  R  Y+    + V+T+S+D+P P+WL    +  +  GP     RATVEE CPKCG+P+M++YT+QLRSADEGQTVFYEC  KKC HK+SVNN
Sbjct:   17 FCPHCGTILDHPDTNSIVCSACEYRCRYQDLPSLTVITRSEDKPTPKWLDAEKVMSEVTGPA----RATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125          
BLAST of mRNA_F-serratus_M_contig848.19860.1 vs. uniprot
Match: A0A6G0WT35_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WT35_9STRA)

HSP 1 Score: 133 bits (334), Expect = 6.300e-38
Identity = 69/114 (60.53%), Postives = 79/114 (69.30%), Query Frame = 0
Query:    5 FCPTCGTVLDPAESGNILCDHCGLRTSYESFGDVEVVTKSQDRPLPEWL---IQLQR-KGPKQELQRATVEEVCPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 114
            FCP CGT+LD  E+ +I+C  CG    Y     +  VT SQDRP P+W+   IQ Q   GP     RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC  KKC H+YSVN
Sbjct:   16 FCPHCGTILDLPETNSIVCSACGFTCRYTDLPSLCTVTFSQDRPEPKWVKQDIQSQNVTGPA----RATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_F-serratus_M_contig848.19860.1 vs. uniprot
Match: K3X016_GLOUD (DNA-directed RNA polymerase subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X016_GLOUD)

HSP 1 Score: 132 bits (332), Expect = 1.230e-37
Identity = 63/115 (54.78%), Postives = 80/115 (69.57%), Query Frame = 0
Query:    5 FCPTCGTVLDPAESGNILCDHCGLRTSYESFGDVEVVTKSQDRPLPEWL----IQLQRKGPKQELQRATVEEVCPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 115
            FCP CGT+LD  ++ NI+C  C  R  Y+    + VVT S+D+P P+WL    +  +  GP     RATVEE CPKCG+ +M++YT+QLRSADEGQTVFYEC  KKC HK+SVNN
Sbjct:   15 FCPHCGTILDHPDTNNIVCSACEYRCQYQDLPSLSVVTYSEDKPAPKWLKAEKVMTEVTGPA----RATVEETCPKCGNLEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 123          
BLAST of mRNA_F-serratus_M_contig848.19860.1 vs. uniprot
Match: A0A067CLZ5_SAPPC (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ5_SAPPC)

HSP 1 Score: 132 bits (331), Expect = 1.800e-37
Identity = 65/114 (57.02%), Postives = 78/114 (68.42%), Query Frame = 0
Query:    5 FCPTCGTVLDPAESGNILCDHCGLRTSYESFGDVEVVTKSQDRPLPEW----LIQLQRKGPKQELQRATVEEVCPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 114
            FCP CGT+LD  E+ NI+C  CG    Y+    +  VT S+DRP P+W    ++  +  GP     RATVEE CPKC +P+MEFYTMQLRSADEGQTVFYEC  KKC H+YSVN
Sbjct:   16 FCPHCGTILDLPETNNIVCSSCGYTCQYQDLPTLCTVTFSEDRPEPKWVKNAIVSQEVTGPA----RATVEEPCPKCNNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_F-serratus_M_contig848.19860.1 vs. uniprot
Match: A0A024TQD9_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.560e-37
Identity = 65/114 (57.02%), Postives = 78/114 (68.42%), Query Frame = 0
Query:    5 FCPTCGTVLDPAESGNILCDHCGLRTSYESFGDVEVVTKSQDRPLPEWL---IQLQR-KGPKQELQRATVEEVCPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 114
            FC  CG++LD  E+ +I+C  CG    Y     +  +T SQDRP P+W+   +Q Q   GP     RATVEE CPKCGHP+MEFYT+QLRSADEGQTVFYEC  KKC H+YSVN
Sbjct:   16 FCKHCGSILDLPETNSIVCSSCGFTCRYTDLPSLTTITYSQDRPEPKWVKENVQSQEVTGPS----RATVEETCPKCGHPEMEFYTLQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_F-serratus_M_contig848.19860.1 vs. uniprot
Match: A0A485LF44_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA)

HSP 1 Score: 130 bits (328), Expect = 5.150e-37
Identity = 68/114 (59.65%), Postives = 78/114 (68.42%), Query Frame = 0
Query:    5 FCPTCGTVLDPAESGNILCDHCGLRTSYESFGDVEVVTKSQDRPLPEWL---IQLQR-KGPKQELQRATVEEVCPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 114
            FCP CGT+LD  E+  I+C  CG    Y     +  VT S+DRP P+W+   IQ Q   GP     RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC  KKC H+YSVN
Sbjct:   16 FCPHCGTILDLPETNAIVCSSCGYTCRYTDLPSLCTVTFSEDRPEPKWVKEEIQSQEVTGPA----RATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig848.19860.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL81_ECTSI3.500e-7285.22DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CG05_9STRA2.330e-5263.48DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A2D4BKP7_PYTIN2.180e-4058.26DNA-directed RNA polymerase subunit n=2 Tax=Pythiu... [more]
A0A0N7L402_PLAHL1.600e-3856.76DNA-directed RNA polymerase subunit n=1 Tax=Plasmo... [more]
M4BZT8_HYAAE2.270e-3853.91DNA-directed RNA polymerase subunit n=22 Tax=Peron... [more]
A0A6G0WT35_9STRA6.300e-3860.53DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
K3X016_GLOUD1.230e-3754.78DNA-directed RNA polymerase subunit n=1 Tax=Globis... [more]
A0A067CLZ5_SAPPC1.800e-3757.02DNA-directed RNA polymerase subunit n=4 Tax=Saprol... [more]
A0A024TQD9_9STRA2.560e-3757.02DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]
A0A485LF44_9STRA5.150e-3759.65DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 72..113
e-value: 6.7E-14
score: 62.2
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 74..111
e-value: 1.5E-16
score: 60.0
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 70..112
score: 13.548
NoneNo IPR availableGENE3D2.20.25.10coord: 60..113
e-value: 3.1E-19
score: 70.0
NoneNo IPR availablePANTHERPTHR11239:SF14DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12coord: 5..115
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 5..115
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 67..112
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 3..115
e-value: 3.2E-24
score: 83.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig848contigF-serratus_M_contig848:64439..87507 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig848.19860.1mRNA_F-serratus_M_contig848.19860.1Fucus serratus malemRNAF-serratus_M_contig848 64265..87836 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig848.19860.1 ID=prot_F-serratus_M_contig848.19860.1|Name=mRNA_F-serratus_M_contig848.19860.1|organism=Fucus serratus male|type=polypeptide|length=116bp
MPWPFCPTCGTVLDPAESGNILCDHCGLRTSYESFGDVEVVTKSQDRPLP
EWLIQLQRKGPKQELQRATVEEVCPKCGHPKMEFYTMQLRSADEGQTVFY
ECLSKKCKHKYSVNN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR012164Rpa12/Rpb9/Rpc10/TFS