prot_F-serratus_M_contig836.19742.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig836.19742.1
Unique Name	prot_F-serratus_M_contig836.19742.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	469

Homology

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BLAST of mRNA_F-serratus_M_contig836.19742.1 vs. uniprot
Match: D8LJT5_ECTSI (Temporarily Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 2.090e-61
Identity = 262/521 (50.29%), Postives = 288/521 (55.28%), Query Frame = 0

Query:    1 MADEDELFAQFLGEINSAVAEPV---------EDGGGASDTASVGEIEGGDTIA-------EDTARRKASTETTPLALPAAKKPKVTGKLVAAALPMKAGTASAVAPKPAASRVEATKSLADSGPSARPTSN---AAKVSKDGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGG----------GDGRMLPEAN----------------GAHRSSGIEGMQGQHPGASQLRGHMGIHH--SQMPGA---MMPGNNG---MGMPPGGGMGMNMGMMGDGIRGDYGGGYG-----------------MPPVMNMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAKGKRKETKANETGAKKFKRVAGGTSWEDTTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYVSFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKDRDAKEV 451
            MADED LFA+F+GEI S V             ED G ASD ASVG+++  D           DT +R+  TE +P   PA KKP+  GKLVAAA P+KAG  +A      AS   AT     SGP AR       AAK   DGS        XXXXXXXXXXXXXXXXXXXXXXX          + GG          G G                       G+     + G  G    A Q  G M +H+  SQM G     MPGNN    MG PP G  G NMGMMG    G    G+G                 MPP     XXXXXXXXXXXX                           XXXXXXXXXXXXXXXXXXXXXXXXX     K K  KA    + KFKRVAGG SWED TLA+WPENDYRLFVGDLGNEVTD++LAG FRKY SFAKA++IREKWNKKSKGYGFVSF+DGMDMLKALREQ GKYLGNRPMKISKSTWK+RD KE+
Sbjct:    1 MADEDALFAEFMGEIKSTVVAAETKGAADAGEEDDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPS--PAPKKPRFMGKLVAAARPVKAGAVAA------ASTARAT----GSGPKARTGDKGTAAAKKDPDGSGADAGTGGXXXXXXXXXXXXXXXXXXXXXXXSGKGGKGETTKTGGXXKGKKGVKNGSGTXXXXXXXXXXXXXXXXXXXXXXGSKDDEEMVGFGGSGGVAKQQAG-MDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRG-NMGMMG---AGSGMAGFGXXXXXXXXXXXXXXXXXMPPGXXXXXXXXXXXXXXXXMGGPGPYPDGSMGYGYGGPMNGMMPGGXXXXXXXXXXXXXXXXXXXXXXXXXX----KDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKIIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEL 500

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BLAST of mRNA_F-serratus_M_contig836.19742.1 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 3.480e-61
Identity = 110/140 (78.57%), Postives = 119/140 (85.00%), Query Frame = 0

Query:  329 KRKETKANETGAKKFKRVAGGTSWEDTTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYVSFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKDRDAKEVRKKNKKAKKVKKQLGML 468
            K K  KA    + KFKRVAGG SWED TLA+WPENDYRLFVGDLGNEVTD++LAG FRKY SFAKA+VIREKWNKKSKGYGFVSF+DGMDMLKALREQ GKYLGNRPMKISKSTWK+RD KEV+KK      VKK LG+L
Sbjct:  397 KDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGLL 536

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BLAST of mRNA_F-serratus_M_contig836.19742.1 vs. uniprot
Match: A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA)

HSP 1 Score: 189 bits (480), Expect = 3.480e-52
Identity = 93/128 (72.66%), Postives = 108/128 (84.38%), Query Frame = 0

Query:  341 KKFKRVAGGTSWEDTTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYVSFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKDRDAKEVRKKNKKAKKVKKQLGML 468
            KKF RV GGT+W+D TL +WPEND+RLFVGDLGNEVTDE+LA  F  Y SF KA+V+REK N KSKGYGFVSF DG DM++ALRE+NGKYLGNRPMKISKS+W +R+ KEVRKK KK K+ KK LG+L
Sbjct:  234 KKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 361

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BLAST of mRNA_F-serratus_M_contig836.19742.1 vs. uniprot
Match: A0A7S1XX46_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX46_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.120e-44
Identity = 80/123 (65.04%), Postives = 98/123 (79.67%), Query Frame = 0

Query:  345 RVAGGTSWEDTTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYVSFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKDRDAKEVRKKNKKAKKVKKQLGM 467
            R AGG +WED TL +WPEND+RLFVGDLG + T   L  +FRKY SFAKAR+ R++   K + YGFVSF+DGMDM+KALREQNGKY GNRPMK+SKSTWK+RD  E+RKK++  KK  K+LG+
Sbjct:   96 RSAGGKTWEDKTLEEWPENDFRLFVGDLGADTTVPMLEQIFRKYPSFAKARICRDRARNKVRQYGFVSFLDGMDMMKALREQNGKYCGNRPMKLSKSTWKERDRSEIRKKDRAKKKFNKKLGV 218

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BLAST of mRNA_F-serratus_M_contig836.19742.1 vs. uniprot
Match: A0A7R9U4X3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4X3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.530e-43
Identity = 76/127 (59.84%), Postives = 101/127 (79.53%), Query Frame = 0

Query:  341 KKFKRVAGGTSWEDTTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYVSFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKDRDAKEVRKKNKKAKKVKKQLGM 467
            KK+ R AGG +WED TLA+W END+RLFVGDLG +VT   L  +FR+Y SFAKA++ R++   K + +GFVSF+DGMD +KA+REQ GKY G RPMKI +STWKDRD +E++KK+K+ KK +K+LG+
Sbjct:   39 KKYMRSAGGQTWEDPTLAEWAENDFRLFVGDLGADVTVPMLESIFRQYQSFAKAKICRDRARNKVRQFGFVSFLDGMDCMKAMREQQGKYCGQRPMKIRRSTWKDRDVQELKKKDKRRKKFEKKLGL 165

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BLAST of mRNA_F-serratus_M_contig836.19742.1 vs. uniprot
Match: A0A7S3JN71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JN71_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.200e-42
Identity = 79/123 (64.23%), Postives = 93/123 (75.61%), Query Frame = 0

Query:  345 RVAGGTSWEDTTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYVSFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKDRDAKEVRKKNKKAKKVKKQLGM 467
            R AGG +W D +L  WPEND+RLFVG+LGNEVTDE ++  F  Y S AKA+VIREK++ KSKGYGFVSF+D  D  KALRE NGKY+GNRP K+ +S WKDR  KEVRKK KK  K KK  G+
Sbjct:   59 RHAGGKTWRDDSLDLWPENDFRLFVGNLGNEVTDEIVSHAFASYASLAKAKVIREKFSNKSKGYGFVSFLDPYDCAKALREMNGKYIGNRPCKLQRSNWKDRTLKEVRKKEKKDSKTKKSWGI 181

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BLAST of mRNA_F-serratus_M_contig836.19742.1 vs. uniprot
Match: A0A6F9DR14_9ASCI (RNA-binding protein 42 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DR14_9ASCI)

HSP 1 Score: 161 bits (407), Expect = 3.680e-41
Identity = 79/120 (65.83%), Postives = 94/120 (78.33%), Query Frame = 0

Query:  342 KFKRVAGGTSWEDTTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYVSFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKDRDAKEVRKKNKKAKKV 461
            K+ R A G+ WED TL DW  NDYR+F GDLGNEVTD+ LA VF KY SF KARV+REK NKKS+GYGFVSF D  D ++A+RE NGKY+GNRP+K+ KSTWKDR+   VRKK K+ KK+
Sbjct:  283 KYVRTAAGSKWEDPTLLDWDSNDYRIFCGDLGNEVTDDTLARVFNKYPSFQKARVVREKNNKKSRGYGFVSFKDPSDFIRAMREMNGKYVGNRPIKLRKSTWKDRNIDVVRKKVKEKKKL 402

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BLAST of mRNA_F-serratus_M_contig836.19742.1 vs. uniprot
Match: UPI001F041A79 (RNA-binding protein 42-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F041A79)

HSP 1 Score: 159 bits (403), Expect = 3.720e-41
Identity = 79/121 (65.29%), Postives = 94/121 (77.69%), Query Frame = 0

Query:  341 KKFKRVAGGTSWEDTTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYVSFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKDRDAKEVRKKNKKAKKV 461
            KKF RVAGG  WEDT+LADW  ND+R+FVGDLGNEVTD+ L   F KY SF KA+VIREK   K+KGYGFVSF D  D +KA+RE NGKY+GNRP+K+ KS+WKDR    V+KK K+ KK+
Sbjct:  224 KKFVRVAGGVVWEDTSLADWDPNDFRIFVGDLGNEVTDDALTRAFAKYPSFQKAKVIREKKTNKTKGYGFVSFKDSGDFIKAMREMNGKYVGNRPIKLRKSSWKDRSIDVVKKKMKEKKKL 344

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BLAST of mRNA_F-serratus_M_contig836.19742.1 vs. uniprot
Match: A0A6G0XJI1_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJI1_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.750e-41
Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 0

Query:  341 KKFKRVAGGTSWEDTTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYVSFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKDRDAKEVRKKNKKAK 459
            KKF R A G  WED+TL +WPENDYRLF GDLGNEV D+ L+  F +Y SFA ARVIR+K   KSKGYGFVSF+DG+D +KA+RE NGKY+G+RP+KI+K  W++R  + V+KKNKK K
Sbjct:  160 KKFLRAAAGKVWEDSTLCEWPENDYRLFCGDLGNEVNDDLLSQAFSQYSSFAMARVIRDKITHKSKGYGFVSFMDGLDAMKAMREMNGKYIGSRPVKITKGKWQERSLEVVKKKNKKNK 278

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BLAST of mRNA_F-serratus_M_contig836.19742.1 vs. uniprot
Match: UPI001069EB21 (RNA-binding protein 42-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069EB21)

HSP 1 Score: 159 bits (402), Expect = 4.280e-41
Identity = 78/121 (64.46%), Postives = 94/121 (77.69%), Query Frame = 0

Query:  341 KKFKRVAGGTSWEDTTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYVSFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKDRDAKEVRKKNKKAKKV 461
            KKF RVAGG  WEDT+LADW  ND+R+FVGD+GNEVTDE L   F KY SF KA+VIRE+   K+KGYGFVSF +  D +KA+RE NGKY+GNRP+K+ KSTWKDR    V+KK K+ KK+
Sbjct:  216 KKFVRVAGGVVWEDTSLADWDPNDFRIFVGDIGNEVTDEALTRAFAKYPSFQKAKVIRERKTNKTKGYGFVSFKESSDFIKAMREMNGKYVGNRPIKLRKSTWKDRSIDVVKKKVKEKKKL 336

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig836.19742.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig836.19742.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LJT5_ECTSI	2.090e-61	50.29	Temporarily Assigned Gene name family member (Tag-...	[more]
A0A6H5KAJ6_9PHAE	3.480e-61	78.57	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A836CHC6_9STRA	3.480e-52	72.66	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S1XX46_9STRA	1.120e-44	65.04	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A7R9U4X3_9STRA	3.530e-43	59.84	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A7S3JN71_9STRA	3.200e-42	64.23	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A6F9DR14_9ASCI	3.680e-41	65.83	RNA-binding protein 42 n=1 Tax=Phallusia mammillat...	[more]
UPI001F041A79	3.720e-41	65.29	RNA-binding protein 42-like n=1 Tax=Xenia sp. Carn...	[more]
A0A6G0XJI1_9STRA	3.750e-41	63.87	RRM domain-containing protein n=1 Tax=Aphanomyces ...	[more]
UPI001069EB21	4.280e-41	64.46	RNA-binding protein 42-like n=1 Tax=Dendronephthya...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 366..439 e-value: 8.0E-16 score: 68.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 367..437 e-value: 3.1E-14 score: 52.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 365..443 score: 15.357
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 360..466 e-value: 2.8E-20 score: 74.6
None	No IPR available	PANTHER	PTHR47640:SF11		coord: 332..462
None	No IPR available	PANTHER	PTHR47640	FAMILY NOT NAMED	coord: 332..462
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 351..445

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig836	contig	F-serratus_M_contig836:196735..220160 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig836.19742.1	mRNA_F-serratus_M_contig836.19742.1	Fucus serratus male	mRNA	F-serratus_M_contig836 196490..220804 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig836.19742.1 ID=prot_F-serratus_M_contig836.19742.1|Name=mRNA_F-serratus_M_contig836.19742.1|organism=Fucus serratus male|type=polypeptide|length=469bp
MADEDELFAQFLGEINSAVAEPVEDGGGASDTASVGEIEGGDTIAEDTAR
RKASTETTPLALPAAKKPKVTGKLVAAALPMKAGTASAVAPKPAASRVEA
TKSLADSGPSARPTSNAAKVSKDGSAGYGNSGAVEPRKDGAVAVPAGNPA
FGEKHGNGGAPRGGDARRGGGDGRMLPEANGAHRSSGIEGMQGQHPGASQ
LRGHMGIHHSQMPGAMMPGNNGMGMPPGGGMGMNMGMMGDGIRGDYGGGY
GMPPVMNMDMRMGMGMGMAPGMDAGPYAGGSVGYVYGGQINGMGQMVAGG
VEGGTAAAMGAAAAAAEEGAETSKEAKGKRKETKANETGAKKFKRVAGGT
SWEDTTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYVSFAKARVIREK
WNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKDRDAKE
VRKKNKKAKKVKKQLGML*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf