prot_F-serratus_M_contig826.19670.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig826.19670.1
Unique Nameprot_F-serratus_M_contig826.19670.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length916
Homology
BLAST of mRNA_F-serratus_M_contig826.19670.1 vs. uniprot
Match: A0A6H5JRX7_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRX7_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 8.630e-80
Identity = 200/498 (40.16%), Postives = 260/498 (52.21%), Query Frame = 0
Query:  107 DDSKVAYIARSKRDIAEHFGVAWSTMQPRLVGKIGTKPSAPVRTISMPDDVEVELYNHIVWMCDNGYPVSWDGIKEVAWQLGRICHLSGERADFAATPQWLKRFKSRFPDLEARFSPILRNQRPMKRGPGDLGNVADSPGDDRPPS---GLGVSWADLGVEGGLSMAPTVTADLSATTP-GGYLAVERARAEAEAVALR-----------VYQQGGIPPGAASGAAGTMNL------HHDPRLRLPHRSIIGQLPPQVLG-HGYGGGQLEMTPHFPA---LLDSSAMRMPSVWGHGGASVVMAS-SAHDELQLQ--PQQKSQEPQQQHINLALQQLKPAGLGSQRVVGLSGQ-----------------------HLINSVG--GLGLGHFDGNPALNTPAGARSQPMSPVAHFPSMTGQGMVVSLGKGGHSQQTNASTSGMVMFPSGGMGGAKRLPASNEGAG-HALGVVGPWQVHSPWPEQLVGPWQHAGISPAPG 550
            DDS+VAYIARSKRD+AEHFGVAWSTMQPRLVGK+G KP++  R  ++PD+VE EL+ H++W+C+NG+P +WD IK +AW+LG++  + G+ ADFAA+  WLKRFK+RFP+LEAR+S  LR  +  K    D+ + AD   D R  S    LG                 V+ DL  TT  GGYLA+ERA+ EAEA   R           +   G + P A                H + +LRL H S++G LP  +L  H Y G QL++ P       LLDS+      VWG  GA V++ S S   E+     P     + Q QH+ L L Q    G+G QR+V + GQ                        L++  G  G+  G  D     +     RSQ  +P+  F  MTGQ M + LG G H QQ      GM +   GG       PA   GAG  A+G+VGPWQ    WPEQL+GPWQH  IS   G
Sbjct:    2 DDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASSARATNLPDEVETELFQHVLWLCENGHPTNWDNIKAIAWKLGKVAGIEGD-ADFAASNHWLKRFKARFPELEARYSHHLRTTQLSKA---DIAS-ADRGRDKRDHSDATSLGDGGXXXXXXXXXXXRYFVSTDLKVTTAAGGYLALERAKVEAEAGTARRXXXXXAAGIALNTAGAVTPAATXXXXXXXXXXXXSAAHQEAQLRLAHASMVGGLPGHLLSAHPYSGSQLQIAPSPQGCHRLLDSTVRG--GVWGQAGAGVLVGSPSTLGEIPPTTCPPNFQLQQQYQHLGLGLHQAGQMGIGGQRMVPIPGQLKQEPXXXXXXXXXXXXXXXXXXXLVSGGGLPGVPAGQMD----ASRMQAVRSQGPTPM-QFTGMTGQNMNMGLGGGAHPQQV-----GMAIDARGGAMTTMYPPAGVGGAGTQAMGMVGPWQAAVGWPEQLMGPWQHTTISQVQG 482          
BLAST of mRNA_F-serratus_M_contig826.19670.1 vs. uniprot
Match: D8LTF1_ECTSI (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTF1_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 1.180e-51
Identity = 116/259 (44.79%), Postives = 149/259 (57.53%), Query Frame = 0
Query:  107 DDSKVAYIARSKRDIAEHFGVAWSTMQPRLVGKIGTKPSAPVRTISMPDDVEVELYNHIVWMCDNGYPVSWDGIKEVAWQLGRICHLSGERADFAATPQWLKRFKSRFPDLEARFSPILRNQRPMKRGPGDLGNVADSPGDDRPPSGLGVSWADLGVEGG----LSMAPTVTADLSATTP-GGYLAVERARAEAEAVALRVYQQ---GGIPPGAASGAA--------------------GTMNLHHDPRLRLPHRSIIG 337
            DDS+VAYIARSKRD+AEHFGVAWSTMQPRLVGK+G KP++  R  ++PD+VE EL+ H++W+C+NG+  +WD IK +AW+LG++  +     DFAA+  WLKRFK RFP LEAR+S  LR  +  K    D+   A+   D+R  S    S  D G  GG       +  V  DL  TT  GGYLA+ERA+ EAEA   R +QQ    GI P  A                         T + H + +LRL    I G
Sbjct:    2 DDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASSARATNLPDEVETELFQHVLWLCENGHSTNWDNIKAIAWKLGKMAGIE----DFAASNHWLKRFKVRFPALEARYSHHLRTTQLSKA---DMA-YAERGRDERDNSDA-TSLGDGGCSGGEGXXXGRSYVVPTDLKVTTAAGGYLALERAKVEAEASTARRHQQQQAAGIAPNTAGAVTPAXXXXXXXXXXXXXXXXXXSTSSAHQEAQLRLAPAPIAG 251          
BLAST of mRNA_F-serratus_M_contig826.19670.1 vs. uniprot
Match: A0A835YWV1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWV1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 4.980e-25
Identity = 74/177 (41.81%), Postives = 102/177 (57.63%), Query Frame = 0
Query:   54 GDARRIMEEAVSLCEAMSLGYEVVLHGRRRSSSSNRSVEGSSDRRRNDSDATCDDSKVAYIARSKRDIAEHFGVAWSTMQPRLVGKIGTKPSAPVRTISMPDDVEVELYNHIVWMCDNGYPVSWDGIKEVAWQLGRICHLSGERADFAATPQWLKRFKSRFPDLEARFSPILRNQRP 230
            G+ARRIM EA++LCEA+  G+ VVL  +    + + S  GS++    DSD  C          SKR+I+E+FG+AWST+QPRLVGK+    S+  R   +PD  E  L   ++WM D+   V+WDGIK  A  L R+ +L G    F A   W KR + RFP L AR    L+ ++P
Sbjct:  313 GEARRIMMEAIALCEAVDEGFMVVLPAKPVLHAES-STRGSAEPAMVDSDPVC--------LGSKREISEYFGIAWSTLQPRLVGKVDQDASSSSRKTRLPDATERSLAQRVLWMVDHRVSVNWDGIKICADALARVQNLEG----FTADDTWAKRIRYRFPGLAARSETYLQVKKP 476          
BLAST of mRNA_F-serratus_M_contig826.19670.1 vs. uniprot
Match: A0A6H5JVN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN1_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.540e-21
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 0
Query:   16 QAVDRDRDSGLRGTGGRKRSSFSRVVPEEGKKRVNYGKGDARRIMEEAVSLCEAMSLGYEVVLHGRRRSSSSNRSV 91
            + +D D  +    T  RKR  F+RVVPEEGKKRVNYGKGDARRIMEEAVSLCEAM+LGYEVV HGRRRS  S+ S+
Sbjct:   18 RGIDNDNRNDNMLTTSRKRFGFARVVPEEGKKRVNYGKGDARRIMEEAVSLCEAMALGYEVVFHGRRRSFKSSSSI 93          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig826.19670.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JRX7_9PHAE8.630e-8040.16HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
D8LTF1_ECTSI1.180e-5144.79HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A835YWV1_9STRA4.980e-2541.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JVN1_9PHAE2.540e-2169.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006600HTH CenpB-type DNA-binding domainPROSITEPS51253HTH_CENPBcoord: 145..220
score: 8.594

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig826contigF-serratus_M_contig826:263712..281140 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig826.19670.1mRNA_F-serratus_M_contig826.19670.1Fucus serratus malemRNAF-serratus_M_contig826 262914..281233 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig826.19670.1 ID=prot_F-serratus_M_contig826.19670.1|Name=mRNA_F-serratus_M_contig826.19670.1|organism=Fucus serratus male|type=polypeptide|length=916bp
MIDRPSRMESPASIPQAVDRDRDSGLRGTGGRKRSSFSRVVPEEGKKRVN
YGKGDARRIMEEAVSLCEAMSLGYEVVLHGRRRSSSSNRSVEGSSDRRRN
DSDATCDDSKVAYIARSKRDIAEHFGVAWSTMQPRLVGKIGTKPSAPVRT
ISMPDDVEVELYNHIVWMCDNGYPVSWDGIKEVAWQLGRICHLSGERADF
AATPQWLKRFKSRFPDLEARFSPILRNQRPMKRGPGDLGNVADSPGDDRP
PSGLGVSWADLGVEGGLSMAPTVTADLSATTPGGYLAVERARAEAEAVAL
RVYQQGGIPPGAASGAAGTMNLHHDPRLRLPHRSIIGQLPPQVLGHGYGG
GQLEMTPHFPALLDSSAMRMPSVWGHGGASVVMASSAHDELQLQPQQKSQ
EPQQQHINLALQQLKPAGLGSQRVVGLSGQHLINSVGGLGLGHFDGNPAL
NTPAGARSQPMSPVAHFPSMTGQGMVVSLGKGGHSQQTNASTSGMVMFPS
GGMGGAKRLPASNEGAGHALGVVGPWQVHSPWPEQLVGPWQHAGISPAPG
PPPQQLQQHHPHHHYQQQQKHQQQQQQQQPNHRKHQQQQLQQLISVQGAY
QGYHTSALDPMEAQGVGLAPGVTLSSTKAQTGAARSPFSARSPHDFEVPA
DHATGLGSSLGLGLGIAGQLQAAPEESPQTLVSPALGIGCIPGAASPQEM
RQPKRENGVVANNRARVVQRAQHDPAPISGSMEVAGGGNYKGGGVGVGTS
VVGGKTSPNSSFTPFSVPSFLPGFGGSTPPESPRSSLFGGGPYPTHLGPV
MRGAEGGETKSTRTSCSSLPSMTRNGRCVRGAGGREVVPVPPSGGAVSSS
PNHQVSCPPPATQQPLHYGGAAYFARARAEGAQAKRCLELSGQATASVRA
GGAGTSVCEGRAGGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006600HTH_CenpB_DNA-bd_dom