prot_F-serratus_M_contig825.19650.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig825.19650.1
Unique Nameprot_F-serratus_M_contig825.19650.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length228
Homology
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BLAST of mRNA_F-serratus_M_contig825.19650.1 vs. uniprot
Match: A0A7S2UY43_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY43_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.270e-12
Identity = 60/211 (28.44%), Postives = 84/211 (39.81%), Query Frame = 0 
Query:    6 VSEAIAFYQDKLRQDSNNPGYHHHLAPL---LVARGNIIAGIRHYRRAYQLNPTDIDSKNDLATVLWRMGKWEAALAALCRVVAVDNDHFEGHVNLAAVYYKKGCYDLALKHARKATQLRPRDPLSHRVIAQVLDQIGNSKEALHHRLIAVRRGPGAAGLTRGGYHPQDVWTYKKIAAQLAIGNEEARDNAHAFMDAHRAMCGKRVELANS 213
            + E+  + QD+LR+   NP     LAP+   L A      GIR +RRA + +P + D  NDL   L + GKWEAAL A+ + + V+  H   H N                                            S+ AL H  IAVRR  GA     GG        Y+ ++       +  R +AH   D HRA+ G++  L  S
Sbjct:   21 LEESQKYCQDRLREKPGNPNALRLLAPINLALEASSGKRWGIRDFRRALEADPFNADMWNDLGLQLHKAGKWEAALVAMQKGLEVNQRHLRLHSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLALEHMRIAVRRDAGAQERFDGGLGGAQA--YRDLSIWSVAQRQTERWHAHDLWDTHRALKGQQNVLPTS 229
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BLAST of mRNA_F-serratus_M_contig825.19650.1 vs. uniprot
Match: D7FJK4_ECTSI (TPR repeat n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK4_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.670e-8
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 0 
Query:  171 DVWTYKKIAAQLAIGNEEARDNAHAFMDAHRAMCGKRVELANSERTREIL 220
            D  TYKKI AQL    +  R+N+HAF+D +RAM GK+VELA SERT E L
Sbjct:  166 DTHTYKKIGAQLVTLGQAERENSHAFVDCYRAMAGKQVELATSERTNECL 215
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig825.19650.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2UY43_9STRA2.270e-1228.44Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D7FJK4_ECTSI1.670e-860.00TPR repeat n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 58..91
e-value: 4.6
score: 16.2
coord: 92..125
e-value: 1.2E-4
score: 31.4
coord: 24..57
e-value: 59.0
score: 8.2
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 92..125
score: 9.411
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 58..91
score: 5.93
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 24..57
score: 7.257
NoneNo IPR availablePFAMPF13432TPR_16coord: 63..126
e-value: 2.2E-6
score: 28.2
NoneNo IPR availablePANTHERPTHR45586FAMILY NOT NAMEDcoord: 88..152
coord: 6..99
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 3..226
e-value: 8.6E-31
score: 109.2
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 6..158
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..159
score: 25.362

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig825contigF-serratus_M_contig825:206787..208232 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig825.19650.1mRNA_F-serratus_M_contig825.19650.1Fucus serratus malemRNAF-serratus_M_contig825 206787..208245 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig825.19650.1 ID=prot_F-serratus_M_contig825.19650.1|Name=mRNA_F-serratus_M_contig825.19650.1|organism=Fucus serratus male|type=polypeptide|length=228bp
MGDPRVSEAIAFYQDKLRQDSNNPGYHHHLAPLLVARGNIIAGIRHYRRA
YQLNPTDIDSKNDLATVLWRMGKWEAALAALCRVVAVDNDHFEGHVNLAA
VYYKKGCYDLALKHARKATQLRPRDPLSHRVIAQVLDQIGNSKEALHHRL
IAVRRGPGAAGLTRGGYHPQDVWTYKKIAAQLAIGNEEARDNAHAFMDAH
RAMCGKRVELANSERTREILQKSLRHQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom