prot_F-serratus_M_contig8.19310.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig8.19310.1
Unique Nameprot_F-serratus_M_contig8.19310.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length250
Homology
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BLAST of mRNA_F-serratus_M_contig8.19310.1 vs. uniprot
Match: A0A836C886_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C886_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.080e-19
Identity = 74/250 (29.60%), Postives = 118/250 (47.20%), Query Frame = 0 
Query:    1 MPLLVLLAVCGAGIHTVGLTAFSRGYFRWDVACEGMLMMGDNIHLGRIDGVQTYKIGWAQYHDVGPKEGSGTIAMSYTDNGTVGINLGLEEVAGSSITELNWLASIDVASAALGAMTTFGHLLGSVFYAIMLSAMVLLFRSSFRSRRKIFWSA--LVPSGVLLVWLLTVAMMGFYLAVRGN--FKEKILDILYDEHFLCQDDSRIDGDFAYIATSLGCMTSAVVFVLMWRYGHDADSAVAERFGRQGSLV 246
            +PLLV+L+     IH   LT  S+GYF WD+ CEG+++ G     G +   + Y +GWA++                TD G          VAG++      L  +D A+A  G +T   HL+ +V +A +L A+  LFR  FR+     W A  L   GV+ + +  V ++     V  N  F + ++  L    + C  +  + G++AY      C  +A++  L+   G  AD+AVA RF R+ +L 
Sbjct:   46 LPLLVMLSAGALAIHIAALTGSSKGYFSWDIKCEGLVLGGTTS--GSVL-TRRYDLGWAKF--------------VITDGG----------VAGAATP----LGKVDAATAFFGTVTGIVHLVSAVSHAALLYAIAWLFRHDFRAPA---WRAFKLAHRGVVALLVANVVLVMVVFGVTANYAFTDAVMSNLKSSSYFCAANDDVGGEYAYTCAGFACAATALLGALLQWRGARADAAVAWRFNRRKTLA 261
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19310.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C886_9STRA4.080e-1929.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 151..176
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 119..139
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 140..150
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 205..225
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 226..249
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 177..204
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..118
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.61
NoneNo IPR availableTMHMMTMhelixcoord: 151..173
NoneNo IPR availableTMHMMTMhelixcoord: 206..228
NoneNo IPR availableTMHMMTMhelixcoord: 117..139
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:657663..659457 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19310.1mRNA_F-serratus_M_contig8.19310.1Fucus serratus malemRNAF-serratus_M_contig8 657028..659633 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig8.19310.1 ID=prot_F-serratus_M_contig8.19310.1|Name=mRNA_F-serratus_M_contig8.19310.1|organism=Fucus serratus male|type=polypeptide|length=250bp
MPLLVLLAVCGAGIHTVGLTAFSRGYFRWDVACEGMLMMGDNIHLGRIDG
VQTYKIGWAQYHDVGPKEGSGTIAMSYTDNGTVGINLGLEEVAGSSITEL
NWLASIDVASAALGAMTTFGHLLGSVFYAIMLSAMVLLFRSSFRSRRKIF
WSALVPSGVLLVWLLTVAMMGFYLAVRGNFKEKILDILYDEHFLCQDDSR
IDGDFAYIATSLGCMTSAVVFVLMWRYGHDADSAVAERFGRQGSLVEAS*
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