prot_F-serratus_M_contig788.19137.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig788.19137.1
Unique Nameprot_F-serratus_M_contig788.19137.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length153
Homology
BLAST of mRNA_F-serratus_M_contig788.19137.1 vs. uniprot
Match: D7FN10_ECTSI (Choline transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN10_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 5.980e-32
Identity = 71/134 (52.99%), Postives = 89/134 (66.42%), Query Frame = 0
Query:   26 IAFYLHRRNGIPFGAANLKVAALAIKSMPRTVHFAVLMSALQVLWGIVTSIAAAGTVAALETVRGPSGTSYSAVECHDVMPDYATLP-----SCMCKGELV-YNNACPYRGRSQTLTWFWLAALLWGGAVFRNV 153
            + FYL R++ I FG+ANLKVA LA+KSMP TV   +LMS +QVLW +++++AA GT+A+L TV G  GT+Y A  C DVM D  T       SCMC G +  YN+AC Y GR   L  FWLA+L WG  V RNV
Sbjct:  157 VRFYLKRQSRIRFGSANLKVAGLAVKSMPWTVRAGLLMSGVQVLWVLLSAMAAGGTIASLRTVTGLDGTTYKASSCSDVMLDPPTRGMVHHLSCMCGGHVASYNSACEYEGRGLWLALFWLASLTWGADVIRNV 290          
BLAST of mRNA_F-serratus_M_contig788.19137.1 vs. uniprot
Match: D7FHM6_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM6_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 2.670e-17
Identity = 60/154 (38.96%), Postives = 90/154 (58.44%), Query Frame = 0
Query:   19 LVAFVFFIAFYLHRRNGIPFGAANLKVAALAIKSMPRTVHFAVLMSALQVLWGIVTSIAAAGTVAALE-TVRGPSGTSYSAVECHDVMPDYATLPS---------------CMCKGELVYNNA-CPYRGRSQ--TLTWFWLAALLWGGAVFRNV 153
            +VA+VF+       ++ + FGAANLKVAALA++SMP T+  A+ MSA+QV+W ++++ AA G+ AA    V G  GT+YS++EC D+     T+PS               C C GE++ +++ C + G      L  FWL ++ W  AV RNV
Sbjct:  261 IVAWVFW-----KNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSASAAGGSFAAFSPVVVGADGTTYSSLECQDI-----TVPSSPYGGGETTAGSGLSCHCGGEVISSDSGCEFSGGFPRWVLAAFWLGSVTWVIAVLRNV 404          
BLAST of mRNA_F-serratus_M_contig788.19137.1 vs. uniprot
Match: D7FHM4_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM4_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 6.410e-16
Identity = 57/149 (38.26%), Postives = 87/149 (58.39%), Query Frame = 0
Query:   19 LVAFVFFIAFYLHRRNGIPFGAANLKVAALAIKSMPRTVHFAVLMSALQVLWGIVTSIAAAGTVAALET-VRGPSGTSYSAVECHDVMPDYATLP----------SCMCKGELVYNNA-CPYRGRSQ--TLTWFWLAALLWGGAVFRNV 153
            +VA+VF+       ++ + FGAANLKVAALA++SMP T+  A+ MSA+QV+W ++++ AA G+ AA    V G  GT+YS++EC D+    +             SC C GE++ +++ C +        L  FWL ++ W  AV RNV
Sbjct:   64 IVAWVFW-----KNQSRLRFGAANLKVAALAVRSMPGTIRLALFMSAVQVVWSMLSASAAWGSFAAFSPMVVGADGTTYSSLECQDIAVPSSPYGGGETTAGSGLSCHCGGEVISSDSGCEFSSGFPRWVLAAFWLGSVTWVIAVLRNV 207          
BLAST of mRNA_F-serratus_M_contig788.19137.1 vs. uniprot
Match: D7FHM5_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM5_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 3.040e-11
Identity = 43/131 (32.82%), Postives = 75/131 (57.25%), Query Frame = 0
Query:   38 FGAANLKVAALAIKSMPRTVHFAVLMSALQVLWGIVTSIAAAGTVAALE-TVRGPSGTSYSAVECHDVMPDYATLP----------SCMCKGELVYNNA-CPYRG---RSQTLTWFWLAALLWGGAVFRNV 153
            FGAA+L VAALA++SMP T++ A+ M A++V+W ++++++A G+  A    V    GT+YS + C D++   +             SC C GE++ +++ C + G   +   L  FW+ + +WG  V  +V
Sbjct:   84 FGAADLNVAALAVRSMPGTIYLALFMGAMRVVWFMLSALSAVGSFVAFSPVVVSADGTTYSFLGCQDIVVSSSPYGGGEATTGSGLSCHCGGEVISSDSGCEFSGGGFQRWVLGVFWVGSFIWGLDVLHDV 214          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig788.19137.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FN10_ECTSI5.980e-3252.99Choline transporter-like protein n=2 Tax=Ectocarpu... [more]
D7FHM6_ECTSI2.670e-1738.96Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D7FHM4_ECTSI6.410e-1638.26Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D7FHM5_ECTSI3.040e-1132.82Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007603Choline transporter-likePFAMPF04515Choline_transpocoord: 17..153
e-value: 8.0E-15
score: 54.9
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 134..150
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 86..133
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..85
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 151..153
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 31..58
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 57..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig788contigF-serratus_M_contig788:267528..268264 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig788.19137.1mRNA_F-serratus_M_contig788.19137.1Fucus serratus malemRNAF-serratus_M_contig788 267526..268264 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig788.19137.1 ID=prot_F-serratus_M_contig788.19137.1|Name=mRNA_F-serratus_M_contig788.19137.1|organism=Fucus serratus male|type=polypeptide|length=153bp
MVTVWALASYKIMIAGVFLVAFVFFIAFYLHRRNGIPFGAANLKVAALAI
KSMPRTVHFAVLMSALQVLWGIVTSIAAAGTVAALETVRGPSGTSYSAVE
CHDVMPDYATLPSCMCKGELVYNNACPYRGRSQTLTWFWLAALLWGGAVF
RNV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007603Choline_transptr-like