prot_F-serratus_M_contig7851.19111.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig7851.19111.1
Unique Nameprot_F-serratus_M_contig7851.19111.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length82
Homology
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A8F0JZ14_9PHAE (Ribosomal protein S18 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZ14_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 8.620e-46
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
Query:    1 MSKTVKQSKMVKTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 81
            MSKTVKQSKMVKTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN
Sbjct:    1 MSKTVKQSKMVKTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 81          
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A7D3QC30_SACLA (30S ribosomal protein S18, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A7D3QC30_SACLA)

HSP 1 Score: 125 bits (315), Expect = 3.850e-36
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 0
Query:    9 KMVKTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 81
            K  KT+RQPFKLKP+ETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSK+IKRARYL LLPFV SVEN
Sbjct:   12 KPTKTRRQPFKLKPNETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 84          
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: D1J7B6_ECTSI (30S ribosomal protein S18, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7B6_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 7.250e-34
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0
Query:   12 KTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 81
            K +RQPFKLKP+ TIDYKQVDILL+FSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYL LLPFV SVEN
Sbjct:   38 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLHLLPFVTSVEN 107          
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A7T8G5I0_SCYLO (30S ribosomal protein S18, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5I0_SCYLO)

HSP 1 Score: 119 bits (299), Expect = 2.080e-33
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 0
Query:   12 KTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 81
            K +RQPFKLKP+ TIDYKQVDILL+FSTEHGKIKSRRSTNLTLKQQRQLSK+IKRARYL LLPFV SVEN
Sbjct:   38 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 107          
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A6B7EYX7_9PHAE (30S ribosomal protein S18 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYX7_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.070e-32
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 0
Query:   12 KTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 81
            K +RQPFKLKP+ TIDYKQVDILL+F TEHGKIKSRRSTNLTLKQQRQLSK+IKRARYL LLPFV SVEN
Sbjct:   34 KVRRQPFKLKPTATIDYKQVDILLAFCTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 103          
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A8F0F760_9PHAE (Ribosomal protein S18 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F760_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.200e-31
Identity = 60/72 (83.33%), Postives = 65/72 (90.28%), Query Frame = 0
Query:   10 MVKTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 81
            MVK KRQ FKLK  +TIDYKQVDILLSF T++GKI+SRRSTNLTLKQQRQLSKSIKRARYLRLLP V+S EN
Sbjct:    1 MVKNKRQTFKLKSKDTIDYKQVDILLSFLTDYGKIRSRRSTNLTLKQQRQLSKSIKRARYLRLLPLVLSPEN 72          
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A1I9LVI1_9PHAE (30S ribosomal protein S18, chloroplastic n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVI1_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.490e-29
Identity = 58/70 (82.86%), Postives = 62/70 (88.57%), Query Frame = 0
Query:   12 KTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 81
            K +R+P KLKP+  IDYKQVDILL+FSTEHGKIKSRR T LTLKQQRQLSKSIKRARYL LLPFV SVEN
Sbjct:   54 KVRREPLKLKPTARIDYKQVDILLAFSTEHGKIKSRRLTKLTLKQQRQLSKSIKRARYLHLLPFVTSVEN 123          
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A2R4QPW6_9PHAE (30S ribosomal protein S18 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPW6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.300e-26
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 0
Query:   12 KTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 81
            K KRQ +K+K +E IDYKQVDILLSF TEHGKIK RRSTNLTLKQQRQLSK+IK AR L LLPFV S+E+
Sbjct:    4 KAKRQTYKIKSNERIDYKQVDILLSFLTEHGKIKPRRSTNLTLKQQRQLSKAIKTARSLNLLPFVTSLED 73          
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A141BSF9_9PHAE (30S ribosomal protein S18, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSF9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.180e-26
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 0
Query:   12 KTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 81
            KTKR  +KLKP+E IDYKQVDIL+SF TEHGKIKSRRST LTL+QQRQLS++IK AR L LLPFV S+E+
Sbjct:    8 KTKRNNYKLKPNEKIDYKQVDILVSFLTEHGKIKSRRSTELTLQQQRQLSRAIKTARSLNLLPFVTSLED 77          
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Match: A0A8E6D6A7_9PHAE (30S ribosomal protein S18, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6A7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 8.930e-18
Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    5 VKQSKMVKTKRQ-PFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 81
            ++Q K  K K+  P K+    TIDYKQ+D+LLS  TE GKIK R+ T  TLKQQRQLSK++KRAR L LLPFV   E 
Sbjct:    1 MQQKKKSKNKKSTPIKITAKHTIDYKQIDLLLSCLTEQGKIKPRKITEFTLKQQRQLSKAVKRARILSLLPFVTVTEK 78          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7851.19111.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JZ14_9PHAE8.620e-46100.00Ribosomal protein S18 n=1 Tax=Desmarestia aculeata... [more]
A0A7D3QC30_SACLA3.850e-3690.4130S ribosomal protein S18, chloroplastic n=26 Tax=... [more]
D1J7B6_ECTSI7.250e-3490.0030S ribosomal protein S18, chloroplastic n=2 Tax=E... [more]
A0A7T8G5I0_SCYLO2.080e-3388.5730S ribosomal protein S18, chloroplastic n=4 Tax=S... [more]
A0A6B7EYX7_9PHAE1.070e-3287.1430S ribosomal protein S18 n=1 Tax=Cladosiphon okam... [more]
A0A8F0F760_9PHAE4.200e-3183.33Ribosomal protein S18 n=1 Tax=Protohalopteris sp. ... [more]
A0A1I9LVI1_9PHAE1.490e-2982.8630S ribosomal protein S18, chloroplastic n=2 Tax=P... [more]
A0A2R4QPW6_9PHAE2.300e-2677.1430S ribosomal protein S18 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSF9_9PHAE5.180e-2675.7130S ribosomal protein S18, chloroplastic n=13 Tax=... [more]
A0A8E6D6A7_9PHAE8.930e-1857.6930S ribosomal protein S18, chloroplastic n=1 Tax=I... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001648Ribosomal protein S18PRINTSPR00974RIBOSOMALS18coord: 65..75
score: 70.25
coord: 33..43
score: 41.05
coord: 51..65
score: 44.65
coord: 43..50
score: 59.85
IPR001648Ribosomal protein S18TIGRFAMTIGR00165TIGR00165coord: 14..76
e-value: 1.0E-18
score: 65.3
IPR001648Ribosomal protein S18PFAMPF01084Ribosomal_S18coord: 24..73
e-value: 1.3E-19
score: 70.1
IPR001648Ribosomal protein S18HAMAPMF_00270Ribosomal_S18coord: 2..78
score: 17.488
IPR036870Ribosomal protein S18 superfamilyGENE3D4.10.640.10coord: 1..79
e-value: 1.2E-23
score: 84.8
IPR036870Ribosomal protein S18 superfamilySUPERFAMILY46911Ribosomal protein S18coord: 6..77
NoneNo IPR availablePANTHERPTHR1347930S RIBOSOMAL PROTEIN S18coord: 9..76
NoneNo IPR availablePANTHERPTHR13479:SF4028S RIBOSOMAL PROTEIN S18C, MITOCHONDRIALcoord: 9..76
NoneNo IPR availablePRODOMPD002239coord: 26..76
e-value: 3.0E-12
score: 167.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7851contigF-serratus_M_contig7851:3104..3349 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7851.19111.1mRNA_F-serratus_M_contig7851.19111.1Fucus serratus malemRNAF-serratus_M_contig7851 3104..3349 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig7851.19111.1 ID=prot_F-serratus_M_contig7851.19111.1|Name=mRNA_F-serratus_M_contig7851.19111.1|organism=Fucus serratus male|type=polypeptide|length=82bp
MSKTVKQSKMVKTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRST
NLTLKQQRQLSKSIKRARYLRLLPFVISVEN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001648Ribosomal_S18
IPR036870Ribosomal_S18_sf