prot_F-serratus_M_contig785.19100.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig785.19100.1
Unique Nameprot_F-serratus_M_contig785.19100.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length198
Homology
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BLAST of mRNA_F-serratus_M_contig785.19100.1 vs. uniprot
Match: A0A6H5LIG4_9PHAE (HRDC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIG4_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 9.730e-26
Identity = 70/165 (42.42%), Postives = 89/165 (53.94%), Query Frame = 0 
Query:    1 MSDAHRKALKKVLVKWRENRVNEFKYTRYFHVLPEPEVLEIIHKVPTTRDELRCIGNWRGDAKLANHGDSLLKTIKEFLEENEVALKGSFPMEDPTELGKEVEFPVGGTQDFEDGHQSIDNDDDASWGGGEVEGAEGESGLPLSCDDESGGSC--SKFFKAPHSG 163
            MSD HR   K  L+KWR+ R  +F   RYF++ PE E+LE+IHKVP T +EL  IG+WRG+ KLA HG+SLL  IK ++++N + L+G FP  D  E+ K  EF  GG           DNDD      G                D   G+   SKFF  PHSG
Sbjct:   90 MSDEHRARFKDALIKWRDERAEQFSL-RYFYIFPETELLEVIHKVPITSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWGDQ-EI-KPPEFTQGGGMSGISDRDDGDNDDGLPCSFGAGTDXXXXXXXXXXXXDAGYGTTTSSKFFPQPHSG 251
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BLAST of mRNA_F-serratus_M_contig785.19100.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.180e-22
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 0 
Query:    1 MSDAHRKALKKVLVKWRENRVNEFKYTRYFHVLPEPEVLEIIHKVPTTRDELRCIGNWRGDAKLANHGDSLLKTIKEFLEENEVALKGSFPMED 94
            MSD HR   K  L+KWR+ R  +F   RYF++ PE E+LE+IHKVP T +EL  IG+WRG+ KLA HG+SLL  IK ++++N + L+G FP  D
Sbjct: 1296 MSDEHRARFKDALIKWRDERAEQFSL-RYFYIFPETELLEVIHKVPVTSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWGD 1388
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig785.19100.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LIG4_9PHAE9.730e-2642.42HRDC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FR28_ECTSI1.180e-2252.13DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002121HRDC domainPFAMPF00570HRDCcoord: 8..75
e-value: 2.5E-5
score: 24.1
IPR002121HRDC domainPROSITEPS50967HRDCcoord: 3..85
score: 14.104
NoneNo IPR availableGENE3D1.10.150.80coord: 1..84
e-value: 2.3E-10
score: 42.0
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 3..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig785contigF-serratus_M_contig785:198835..201620 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig785.19100.1mRNA_F-serratus_M_contig785.19100.1Fucus serratus malemRNAF-serratus_M_contig785 197216..201806 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig785.19100.1 ID=prot_F-serratus_M_contig785.19100.1|Name=mRNA_F-serratus_M_contig785.19100.1|organism=Fucus serratus male|type=polypeptide|length=198bp
MSDAHRKALKKVLVKWRENRVNEFKYTRYFHVLPEPEVLEIIHKVPTTRD
ELRCIGNWRGDAKLANHGDSLLKTIKEFLEENEVALKGSFPMEDPTELGK
EVEFPVGGTQDFEDGHQSIDNDDDASWGGGEVEGAEGESGLPLSCDDESG
GSCSKFFKAPHSGARDGARGGGGGAGAGEGLAGDQGLLVHDLLEMTL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002121HRDC_dom
IPR010997HRDC-like_sf