prot_F-serratus_M_contig749.18720.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig749.18720.1
Unique Name	prot_F-serratus_M_contig749.18720.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	477

Homology

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BLAST of mRNA_F-serratus_M_contig749.18720.1 vs. uniprot
Match: D8LB95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB95_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 3.850e-67
Identity = 149/220 (67.73%), Postives = 171/220 (77.73%), Query Frame = 0

Query:  200 DGSPKEI-EPSKVLHVRNVGHPVVQADLVSLLSCFGQVEKVKMFNAQALVQLPSVNIAKATIHHFEHDGEARIGNRKVYINYSRSRSIEGRDIEPLNSTSFSSRSNXXXXXXXXXXXXXXXXXXITNVGNNGLAAART-----GVG-----SDGNGHMDTAGPYAHLIIEDHARLLGLATTYLQNYGIPGGEGAVLNINQREDMAEYQRQALAAAMVLNG 408
            DGSP++  EPSKVLHVRNVG+PVVQ DLV+LLSCFGQVEK+KMF+ QALVQLPSV++AKAT+ H+E D E +IG ++VY+NYSRSRSIE RD E L     ++    XXXXXXXXXXXXXXXXX  N GNNGL  AR      GVG     S GN   +T  PYAHLI+EDHA+LLGLAT YLQ YGIPGGEGA+LNINQRE+MAE QRQA+AAA  L G
Sbjct:  217 DGSPRQTPEPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMFSGQALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIETRDGESL--AVGATAGGGXXXXXXXXXXXXXXXXXNVNGGNNGLDLARAINAARGVGGMDGGSTGNPMQETPSPYAHLIMEDHAKLLGLATCYLQTYGIPGGEGAILNINQREEMAERQRQAMAAAFALTG 434

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BLAST of mRNA_F-serratus_M_contig749.18720.1 vs. uniprot
Match: A0A1R3L5K1_ASPOF (Uncharacterized protein n=3 Tax=Asparagus officinalis TaxID=4686 RepID=A0A1R3L5K1_ASPOF)

HSP 1 Score: 62.0 bits (149), Expect = 1.180e-6
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 0

Query:  207 EPSKVLHVRNVGHPVVQADLVSLLSCFGQVEKVKMFNA--QALVQLPSVNIAKATIHHFEHDGEARIGNRKVYINYS 281
            EPSKV+HVRNVGH + ++DL+ LL  FG V KV M  A  QAL+Q+  V+ A A + ++  + +  +  R VY+ +S
Sbjct:    3 EPSKVIHVRNVGHEIAESDLLQLLQPFGTVTKVVMLRAKNQALLQMYDVSSAAAAMQYYA-NVQPSVRGRNVYMQFS 78

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BLAST of mRNA_F-serratus_M_contig749.18720.1 vs. uniprot
Match: A0A446K2N1_TRITD (RRM domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446K2N1_TRITD)

HSP 1 Score: 58.2 bits (139), Expect = 2.370e-6
Identity = 29/77 (37.66%), Postives = 48/77 (62.34%), Query Frame = 0

Query:  207 EPSKVLHVRNVGHPVVQADLVSLLSCFGQVEKVKMFNA--QALVQLPSVNIAKATIHHFEHDGEARIGNRKVYINYS 281
            EPSKV+H+RNVGH + +ADL+ LL  FG + K+ M     QAL+Q+  ++ + + + ++    +  I  R VY+ +S
Sbjct:    3 EPSKVIHIRNVGHEITEADLLQLLQPFGSISKLVMLRGKNQALLQMQDIHSSVSALQYYS-GVQPSIRGRHVYMQFS 78

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BLAST of mRNA_F-serratus_M_contig749.18720.1 vs. uniprot
Match: A0A452Z727_AEGTS (RRM domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452Z727_AEGTS)

HSP 1 Score: 58.2 bits (139), Expect = 2.830e-6
Identity = 29/77 (37.66%), Postives = 48/77 (62.34%), Query Frame = 0

Query:  207 EPSKVLHVRNVGHPVVQADLVSLLSCFGQVEKVKMFNA--QALVQLPSVNIAKATIHHFEHDGEARIGNRKVYINYS 281
            EPSKV+H+RNVGH + +ADL+ LL  FG V K+ M     QAL+Q+  ++ + + + ++    +  +  R VY+ +S
Sbjct:    3 EPSKVIHIRNVGHEITEADLLQLLQPFGSVSKLVMLRGKNQALLQMQDIHSSVSALQYYS-GVQPSVRGRHVYMQFS 78

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BLAST of mRNA_F-serratus_M_contig749.18720.1 vs. uniprot
Match: A0A3L6DLI0_MAIZE (Polypyrimidine tract-binding 3 n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6DLI0_MAIZE)

HSP 1 Score: 59.7 bits (143), Expect = 2.850e-6
Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 0

Query:  207 EPSKVLHVRNVGHPVVQADLVSLLSCFGQVEKVKMFNA--QALVQLPSVNIAKATIHHFEHDGEARIGNRKVYINYS 281
            EPSKV+H+RNVGH + ++DL+ LL  FG V K+ M  A  QAL+Q+  ++ + + + ++    +  I  R VY+ +S
Sbjct:    3 EPSKVIHIRNVGHEIAESDLLQLLQPFGMVSKIVMLRAKNQALLQMEDLHASVSALQYYT-SVQPSIRGRNVYMQFS 78

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BLAST of mRNA_F-serratus_M_contig749.18720.1 vs. uniprot
Match: A0A2Z6NYT8_TRISU (RRM domain-containing protein (Fragment) n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NYT8_TRISU)

HSP 1 Score: 59.3 bits (142), Expect = 3.610e-6
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 0

Query:  207 EPSKVLHVRNVGHPVVQADLVSLLSCFGQVEKVKMFNA--QALVQLPSVNIAKATIHHFEHDGEARIGNRKVYINYSRSRSI-------EGRDIEP 293
            EPSKV+HVRNVGH + + DL+ L   FG + K+ +  A  QAL+Q+  +  A + I ++  + +  I  R VY+ +S  R +       +GR+ EP
Sbjct:    3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVVLRAKNQALLQMQDIPSAVSAIQYYA-NSQPNIRGRNVYVQFSSHRELTTMDQQSQGREDEP 97

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BLAST of mRNA_F-serratus_M_contig749.18720.1 vs. uniprot
Match: G7IBX9_MEDTR (Polypyrimidine tract-binding-like protein n=20 Tax=rosids TaxID=71275 RepID=G7IBX9_MEDTR)

HSP 1 Score: 60.1 bits (144), Expect = 4.800e-6
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 0

Query:  207 EPSKVLHVRNVGHPVVQADLVSLLSCFGQVEKVKMFNA--QALVQLPSVNIAKATIHHFEHDGEARIGNRKVYINYSRSRSI------EGRDIEP 293
            EPSKV+HVRNVGH + + DL+ L   FG + K+ M  A  QAL+Q+  V  A + +H F  + +  I  R VY+ +S  + +      +GR  EP
Sbjct:    3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVSALH-FYGNTQPSIRGRNVYVQFSSHQELTTIDQSQGRGDEP 96

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BLAST of mRNA_F-serratus_M_contig749.18720.1 vs. uniprot
Match: A0A444XTH1_ARAHY (RRM domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444XTH1_ARAHY)

HSP 1 Score: 56.2 bits (134), Expect = 5.470e-6
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 0

Query:  207 EPSKVLHVRNVGHPVVQADLVSLLSCFGQVEKVKMFNA--QALVQLPSVNIAKATIHHFEHDGEARIGNRKVYINYSRSRSIEGRD 290
            EPSKV+HVRNVGH + + DL+ L   FG + K+ M  A  QALVQ+  V  A  ++  F  + +  I  R VY+ +S  + +   D
Sbjct:   41 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALVQMQDVASAVNSLQ-FYANVQPSIRGRNVYVQFSSHQELTSMD 125

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BLAST of mRNA_F-serratus_M_contig749.18720.1 vs. uniprot
Match: A0A452Z729_AEGTS (RRM domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452Z729_AEGTS)

HSP 1 Score: 54.7 bits (130), Expect = 5.500e-6
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 0

Query:  207 EPSKVLHVRNVGHPVVQADLVSLLSCFGQVEKVKMFNA--QALVQLPSVNIAKATIHHF 263
            EPSKV+H+RNVGH + +ADL+ LL  FG V K+ M     QAL+Q+  ++ + + + ++
Sbjct:    3 EPSKVIHIRNVGHEITEADLLQLLQPFGSVSKLVMLRGKNQALLQMQDIHSSVSALQYY 61

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BLAST of mRNA_F-serratus_M_contig749.18720.1 vs. uniprot
Match: UPI00126323E9 (polypyrimidine tract-binding protein homolog 3-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI00126323E9)

HSP 1 Score: 57.0 bits (136), Expect = 5.710e-6
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 0

Query:  207 EPSKVLHVRNVGHPVVQADLVSLLSCFGQVEKVKMFNA--QALVQLPSVNIAKATIHHFEHDGEARIGNRKVYINYS 281
            EPSKV+HVRNVGH + + DL+ L   FG + K+ M  A  QAL+Q+  V  A A + ++  + +  I  R VY+ +S
Sbjct:    3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAIAALQYYA-NVQPSIRGRNVYVQFS 78

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig749.18720.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig749.18720.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LB95_ECTSI	3.850e-67	67.73	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A1R3L5K1_ASPOF	1.180e-6	44.16	Uncharacterized protein n=3 Tax=Asparagus officina...	[more]
A0A446K2N1_TRITD	2.370e-6	37.66	RRM domain-containing protein n=1 Tax=Triticum tur...	[more]
A0A452Z727_AEGTS	2.830e-6	37.66	RRM domain-containing protein n=2 Tax=Aegilops tau...	[more]
A0A3L6DLI0_MAIZE	2.850e-6	38.96	Polypyrimidine tract-binding 3 n=1 Tax=Zea mays Ta...	[more]
A0A2Z6NYT8_TRISU	3.610e-6	36.46	RRM domain-containing protein (Fragment) n=1 Tax=T...	[more]
G7IBX9_MEDTR	4.800e-6	38.95	Polypyrimidine tract-binding-like protein n=20 Tax...	[more]
A0A444XTH1_ARAHY	5.470e-6	39.53	RRM domain-containing protein n=1 Tax=Arachis hypo...	[more]
A0A452Z729_AEGTS	5.500e-6	42.37	RRM domain-containing protein n=1 Tax=Aegilops tau...	[more]
UPI00126323E9	5.710e-6	41.56	polypyrimidine tract-binding protein homolog 3-lik...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 199..317 e-value: 1.7E-12 score: 49.3
None	No IPR available	PANTHER	PTHR23189	RNA RECOGNITION MOTIF-CONTAINING	coord: 204..287
None	No IPR available	PANTHER	PTHR23189:SF88		coord: 204..287
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 210..283 score: 9.252
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 197..286

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig749	contig	F-serratus_M_contig749:78421..104483 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig749.18720.1	mRNA_F-serratus_M_contig749.18720.1	Fucus serratus male	mRNA	F-serratus_M_contig749 74675..104921 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig749.18720.1 ID=prot_F-serratus_M_contig749.18720.1|Name=mRNA_F-serratus_M_contig749.18720.1|organism=Fucus serratus male|type=polypeptide|length=477bp
MTATATSPEGMDIADDGNSIPSRRVGQVKAAREIVLDGDVAGILGQALPH
VSYSVDSDPGLRGMMTSTPAGDDVDPPSRRYTHEGGGGGPRNTSGSEEGY
EYRTERDAGSSRAGSNESIDSCIDRRTRQRRDVGSSASSSRRHGDRSRDP
RHRYGNGCNNDSATPRSDRGGSGGGRGDAGNGRGSDMRVEMASRRRPGGD
GSPKEIEPSKVLHVRNVGHPVVQADLVSLLSCFGQVEKVKMFNAQALVQL
PSVNIAKATIHHFEHDGEARIGNRKVYINYSRSRSIEGRDIEPLNSTSFS
SRSNNNNNNNSSNSSSHGGGGGITNVGNNGLAAARTGVGSDGNGHMDTAG
PYAHLIIEDHARLLGLATTYLQNYGIPGGEGAVLNINQREDMAEYQRQAL
AAAMVLNGGGTGTAGITTWSPATTAGGGRFATGVSTSGSHTGYSPRPRSG
SRSQPDDEMYRPPPRNRGGRGGASQR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR035979	RBD_domain_sf