prot_F-serratus_M_contig740.18659.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig740.18659.1
Unique Nameprot_F-serratus_M_contig740.18659.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length345
Homology
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BLAST of mRNA_F-serratus_M_contig740.18659.1 vs. uniprot
Match: A0A6H5JPX1_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX1_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.960e-21
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 0 
Query:  266 ASAVDRSSFFAKLHALEGKKGTVGTVHASGVRGGGAGGGAEPL-IKTSDWECLKCGRSNFKNASSCGRCQALKRMTLWRD 344
            A A  ++SFFA+L A E KKGTVGT+HA+G  GG          I++SDWECLKCG+SN+KNAS+C RC ALKRMTLWRD
Sbjct:  238 APAAGKNSFFAQLQASERKKGTVGTIHATGNHGGXXXXXXXXAGIQSSDWECLKCGKSNYKNASACDRCHALKRMTLWRD 317
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig740.18659.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPX1_9PHAE5.960e-2162.50RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.1060.10coord: 304..340
e-value: 4.5E-6
score: 27.8
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 314..333
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 310..339
score: 8.874
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 304..338

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig740contigF-serratus_M_contig740:200150..208092 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig740.18659.1mRNA_F-serratus_M_contig740.18659.1Fucus serratus malemRNAF-serratus_M_contig740 199605..208590 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig740.18659.1 ID=prot_F-serratus_M_contig740.18659.1|Name=mRNA_F-serratus_M_contig740.18659.1|organism=Fucus serratus male|type=polypeptide|length=345bp
MKTDRTRVEAQNTSSSRRRRHDIAPVPSPPRGHRVYTSREVEHRSHKRPR
STSPPRTRGASPPRTRGTSPPRTRGPKNGAQDGDGQGGNDENDTIKRGRE
GVKAKKAKRRGSEDRETRREKKSKKERHSRKQLKKKHKQHRRGEENRVGS
SKNGEWASEERRRSSSRSSSNSRGSDRGKEDIETPPRSKEEPIGTSGREE
TKGNGGCESSSVLGEDVPVPPAADPAVKPQGRDSRIEQEAVDLDEDAPTP
PASPGVRPQEAEISAASAVDRSSFFAKLHALEGKKGTVGTVHASGVRGGG
AGGGAEPLIKTSDWECLKCGRSNFKNASSCGRCQALKRMTLWRD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR036443Znf_RanBP2_sf