prot_F-serratus_M_contig74.18651.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig74.18651.1
Unique Nameprot_F-serratus_M_contig74.18651.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length84
Homology
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BLAST of mRNA_F-serratus_M_contig74.18651.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 3.820e-41
Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = 0 
Query:    1 MSGDAEHAAEEMGKWKKMTAGMGVLTVIVTAYVVATEEHHHKDEDAPVPSHLQIRNKPFPWTCAGCSLLDLECFKKCKEDRE 82
            MSGDA HAAEEM KWKKMTAGMGVL++ VT  V+ATEEHHH+DEDAP+PS+++IRNKP PW CA C+LLD  CF KCK +RE
Sbjct:   25 MSGDAAHAAEEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAERE 106
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig74.18651.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHU0_ECTSI3.820e-4173.17Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036418Cytochrome c oxidase, subunit VIa superfamilyGENE3D4.10.95.10coord: 2..68
e-value: 1.8E-10
score: 42.7
IPR036418Cytochrome c oxidase, subunit VIa superfamilySUPERFAMILY81411Mitochondrial cytochrome c oxidase subunit VIacoord: 4..61
NoneNo IPR availablePANTHERPTHR11504:SF0CYTOCHROME C OXIDASE SUBUNIT 6A, MITOCHONDRIALcoord: 5..80
NoneNo IPR availableTMHMMTMhelixcoord: 18..35
IPR001349Cytochrome c oxidase, subunit VIaPANTHERPTHR11504CYTOCHROME C OXIDASE POLYPEPTIDE VIAcoord: 5..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig74contigF-serratus_M_contig74:579356..580522 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig74.18651.1mRNA_F-serratus_M_contig74.18651.1Fucus serratus malemRNAF-serratus_M_contig74 578578..580576 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig74.18651.1 ID=prot_F-serratus_M_contig74.18651.1|Name=mRNA_F-serratus_M_contig74.18651.1|organism=Fucus serratus male|type=polypeptide|length=84bp
MSGDAEHAAEEMGKWKKMTAGMGVLTVIVTAYVVATEEHHHKDEDAPVPS
HLQIRNKPFPWTCAGCSLLDLECFKKCKEDREL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036418Cyt_c_oxidase_su6a_sf
IPR001349Cyt_c_oxidase_su6a