prot_F-serratus_M_contig712.18332.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig712.18332.1
Unique Nameprot_F-serratus_M_contig712.18332.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length340
Homology
BLAST of mRNA_F-serratus_M_contig712.18332.1 vs. uniprot
Match: D7FXW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW7_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 5.470e-52
Identity = 106/156 (67.95%), Postives = 123/156 (78.85%), Query Frame = 0
Query:  125 DEDEEEVTE--DTGGGMLSASARAELTLYLLVTGATHYEVADASAALFAVEVESALTGVTWRRWRRNLDGLTSNGFSGSDVANMLTLCPRLLALDFEGQVVPVMILLREALGMRPTDMRRVIRKAPEVLAPRPDGSTAAETVEVLRALGFQTRHVR 278
            DE+E+  TE  DTGGG+  A+ + EL LYLL  G T   VA A+AALFA E   +LT  TW+RWR+NLDGL S GFSG+DV NML LCP+LLALDFEGQVVP M LLR+ LGMRPTD+RRVIRKAPEVLAPRPDGSTAAE V+VLR LG + RH++
Sbjct:  176 DEEEDTSTELEDTGGGVC-ATVKEELALYLLEAGVTDDLVAIATAALFAAEPRCSLTEGTWKRWRQNLDGLRSKGFSGTDVCNMLALCPQLLALDFEGQVVPTMELLRQ-LGMRPTDVRRVIRKAPEVLAPRPDGSTAAEAVDVLRTLGLRRRHLK 329          
BLAST of mRNA_F-serratus_M_contig712.18332.1 vs. uniprot
Match: A0A6H5KUV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV8_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 3.970e-50
Identity = 102/145 (70.34%), Postives = 117/145 (80.69%), Query Frame = 0
Query:  134 DTGGGMLSASARAELTLYLLVTGATHYEVADASAALFAVEVESALTGVTWRRWRRNLDGLTSNGFSGSDVANMLTLCPRLLALDFEGQVVPVMILLREALGMRPTDMRRVIRKAPEVLAPRPDGSTAAETVEVLRALGFQTRHVR 278
            DTGGG+  A+A+ EL LYLL  GAT   VA A+AALFA E   +LT  TW+RWR+NLDGL S GFS +DV NML LCP+LLALDFEGQVVP M LLR+ LGMRPTD+RRVIRKAPEVLAPRPDGSTAAE V+VLR LG + RH++
Sbjct:  647 DTGGGVC-ATAKEELALYLLEAGATDDLVAIATAALFAAEPRCSLTEGTWKRWRQNLDGLRSKGFSAADVCNMLALCPQLLALDFEGQVVPTMELLRQ-LGMRPTDVRRVIRKAPEVLAPRPDGSTAAEAVDVLRTLGLRRRHLK 789          
BLAST of mRNA_F-serratus_M_contig712.18332.1 vs. uniprot
Match: A0A835Z724_9STRA (mTERF-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z724_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.080e-11
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 0
Query:  206 MLTLCPRLLALDFEGQVVPVMILLREALGMRPTDMRRVIRKAPEVLAPRPDGSTAAETVEVLRALGFQTRHV 277
            M    P+LL + F   VVPVM L+R+ LG RPTD RRV+R+AP+VL PR DGST  +T+  L+ALG + + V
Sbjct:    1 MAVKMPQLLDMCFSADVVPVMELMRQELGFRPTDARRVLRRAPQVLLPRQDGSTPVDTIAALQALGLKPKMV 72          
BLAST of mRNA_F-serratus_M_contig712.18332.1 vs. uniprot
Match: A0A7S3YEI3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEI3_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 1.840e-11
Identity = 55/156 (35.26%), Postives = 83/156 (53.21%), Query Frame = 0
Query:  142 ASARAELTLYLLVTGATHYEVADASAALFAVEVESALTGVTWRRWRRNLDGLTSN-GFSGSDVANMLTLCPRLLALDFEG---QVVPVMILLREALGMRPTDMRRVIRKAPEVLAPRPDGSTAAETVEVLRALGFQTRHVRGRLCGGLSCLPCRPR 293
            A     LT +LL  GA H EVA   +A  A     A+ G  +  WR NL  L  + GF+G D+A +L   P  LA++ +        V+  L   +G+R +++R+V+R+AP++LAPR DG++AA+T   L  +G + R +R  L      L   PR
Sbjct:    1 AEGAEPLTYFLLQAGANHAEVAGVLSAAGAFI--RAVQGNPF--WRTNLQYLLDDQGFTGQDLAQLLQAWPDFLAVECDATGYMETEVLDYLYGTVGLRRSEVRKVVRRAPQLLAPRADGTSAADTAAALALVGLRPRALRAALVAHPRLLAHTPR 152          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig712.18332.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FXW7_ECTSI5.470e-5267.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUV8_9PHAE3.970e-5070.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z724_9STRA1.080e-1152.78mTERF-domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S3YEI3_HETAK1.840e-1135.26Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 174..282
e-value: 7.7E-8
score: 33.8
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 193..278
e-value: 1.4E-7
score: 30.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig712contigF-serratus_M_contig712:214167..220284 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig712.18332.1mRNA_F-serratus_M_contig712.18332.1Fucus serratus malemRNAF-serratus_M_contig712 209725..225435 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig712.18332.1 ID=prot_F-serratus_M_contig712.18332.1|Name=mRNA_F-serratus_M_contig712.18332.1|organism=Fucus serratus male|type=polypeptide|length=340bp
MVSQRRRQQQDEEILGTKRQEAAPAGRRKWSGKGWLGIGASWRAGEGWGG
PREDQSLARSASATAEGVVLPANATSSSSFSMGSGRLTVWASGGFNEVGE
QASWRVWRGPTRRAAMVELAGEKVDEDEEEVTEDTGGGMLSASARAELTL
YLLVTGATHYEVADASAALFAVEVESALTGVTWRRWRRNLDGLTSNGFSG
SDVANMLTLCPRLLALDFEGQVVPVMILLREALGMRPTDMRRVIRKAPEV
LAPRPDGSTAAETVEVLRALGFQTRHVRGRLCGGLSCLPCRPRTFSSSPP
SSLLKRWASRQPTSGHWSARPLGWLSSASTDRWWPWWSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038538MTERF_sf
IPR003690MTERF