prot_F-serratus_M_contig711.18324.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig711.18324.1
Unique Nameprot_F-serratus_M_contig711.18324.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length526
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig711.18324.1 vs. uniprot
Match: D8LHW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHW9_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.550e-29
Identity = 71/134 (52.99%), Postives = 92/134 (68.66%), Query Frame = 0 
Query:   52 ASTTLSALQLVISLGWVSSVTSLQLTSLQVLIDCRICTDFRLRVARKTPRRVWYVKLGGICRGGGFPERSVRLSVPKVTRMIYDKPSFVELDEGWALPKELEGLVLGTEFGGEIDGVVWPSALRSVVFWRSRFN 185
            A+TTL AL++VI+ GWV+   SLQ+ S++ L  CR   +FRLR+ARKTPRRV+  K  G    GG    S  + +P+V R++YD+  F +L  GWALP EL GLVLGTEF G++ GV WP  L S+VFWR RFN
Sbjct:   24 AATTLGALRVVIASGWVARTISLQVASVETLRSCREVANFRLRIARKTPRRVYQDKFAG----GGHGRVSRSIILPRVVRVLYDRSEF-DLKPGWALPVELVGLVLGTEFCGDLKGVPWPPTLSSIVFWR-RFN 151
[Close]
BLAST of mRNA_F-serratus_M_contig711.18324.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.120e-28
Identity = 68/130 (52.31%), Postives = 89/130 (68.46%), Query Frame = 0 
Query:   52 ASTTLSALQLVISLGWVSSVTSLQLTSLQVLIDCRICTDFRLRVARKTPRRVWYVKLGGICRGGGFPERSVRLSVPKVTRMIYDKPSFVELDEGWALPKELEGLVLGTEFGGEIDGVVWPSALRSVVFWR 181
            A+TTL AL++VI+ GWV+   SLQ+ S++ L  CR   +FRLR+ARKTPRRV+  K  G    GG    S  + +P+V R++YD+  F +L  GWALP EL GLVLGTEF G++ GV WP  L S+VFWR
Sbjct:  297 AATTLGALRVVIASGWVARTISLQVASVETLRSCREVANFRLRIARKTPRRVYQDKFAG----GGRGRVSRSIILPRVVRVLYDRSEF-DLKPGWALPVELVGLVLGTEFCGDLKGVPWPPTLSSIVFWR 421
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig711.18324.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHW9_ECTSI2.550e-2952.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6U6_9PHAE1.120e-2852.31Reverse transcriptase domain-containing protein n=... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008615FNIPPFAMPF05725FNIPcoord: 362..403
e-value: 6.3E-5
score: 23.1
coord: 184..226
e-value: 1.5E-8
score: 34.7
coord: 284..315
e-value: 2.8E-4
score: 21.0
coord: 416..448
e-value: 1.2E-5
score: 25.4
coord: 318..359
e-value: 3.9E-7
score: 30.1
coord: 228..271
e-value: 9.0E-9
score: 35.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 147..377
e-value: 8.7E-8
score: 32.8
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 260..491
coord: 216..396
coord: 148..342
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 132..494

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig711contigF-serratus_M_contig711:214784..220479 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig711.18324.1mRNA_F-serratus_M_contig711.18324.1Fucus serratus malemRNAF-serratus_M_contig711 214784..220479 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig711.18324.1 ID=prot_F-serratus_M_contig711.18324.1|Name=mRNA_F-serratus_M_contig711.18324.1|organism=Fucus serratus male|type=polypeptide|length=526bp
SHISTRISTKIFQLFDLSLGEYSLRTLPNPLSVSTMSATSCNESNGVQQQ
FASTTLSALQLVISLGWVSSVTSLQLTSLQVLIDCRICTDFRLRVARKTP
RRVWYVKLGGICRGGGFPERSVRLSVPKVTRMIYDKPSFVELDEGWALPK
ELEGLVLGTEFGGEIDGVVWPSALRSVVFWRSRFNRNIDKVQWPSSLKHL
TFGSNFNKPIHAAKWPPHLESLTFGNWFDQPIAGVEFPVGLKHLTLGRDF
NQPLEGILWPKQLVRLTLGFFFNRPLNSAAQRWPSTLKELALGDCFNQNI
SEVAWPDSLKVLAFGRGFNQDLEGVRWPSSLRKLKFGGMFNQDLTAAGFP
ESLEELDLGFAFNQPMVGVALPGGMKRLIFGEEFNQALDGIVWPSGIEEM
RFGVQFDRPVVGVRWPSYLIKLVFGESFNQPLAGANLPDRLEELVFGKEF
DQGLDQVHWPSNLRTVLFGECFNQSLITAKWPKSLRKIQLGNNFDQGAGG
LALPPRVEVDFVDTFRPVDPDRVAT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008615FNIP
IPR032675LRR_dom_sf