prot_F-serratus_M_contig707.18272.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig707.18272.1
Unique Nameprot_F-serratus_M_contig707.18272.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length333
Homology
BLAST of mRNA_F-serratus_M_contig707.18272.1 vs. uniprot
Match: D7G4R0_ECTSI (Ribosomal large subunit pseudouridine synthase A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R0_ECTSI)

HSP 1 Score: 500 bits (1288), Expect = 2.480e-176
Identity = 235/309 (76.05%), Postives = 267/309 (86.41%), Query Frame = 0
Query:   20 ELNVVYSDDDIVVLDKPAGLRTVPGKAMGPDTETKAHTEWHSGTKRQRQEFWTGVVHSTCSSLLKDDVTEGDEEFRGHLRRLTRENNVPRKRVKFDNYMGVTLGLEGDERDRISARLWDAVDSRLKLEAGPGVDCLLTRVQSRWPTARHVHRLDQDTSGLVVMALTPEAAREICRQFRERVPSKTYTAIVEGRMAKTAKGGEVVAKIRPDRDNRPRQIFDEDGGNEARTLWKRVKREDDRTTVCFTPVTGRTHQIRMHAKFLGHPIMGDSLYGTEQGRAKSDRLLLHARQLSFNHPRTGENVVFERSPP 328
            +++V++SD DIVVL+KP GLRTVPGKA+GP+ ET+ H EWHSGTKRQRQEFWT VVH+ C SLL D+ TEG+EEFR HLRRLT+ENNVPRKR KF NY  VTLGLEG+E D++SARLWD VD  LK E GPGVDCLLTRVQSRWP ARHVHRLDQDTSGLVVMALT EAARE+CRQFRERVPSKTYTA++EGRMAKT K GEV AK+RPD DNRP+Q+F E+ GNEA T W+R+KR++DRT V FTPVTGRTHQIRMHA  LGHP+MGDSLYGT +G AKS+RLLLHAR++SF HPRTGE V FE  PP
Sbjct:   23 DVDVIFSDPDIVVLNKPTGLRTVPGKAVGPEAETRVHVEWHSGTKRQRQEFWTDVVHTACESLLNDEKTEGEEEFRDHLRRLTKENNVPRKRSKFHNYTAVTLGLEGEEGDKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGTAKSERLLLHARRISFPHPRTGETVEFECPPP 331          
BLAST of mRNA_F-serratus_M_contig707.18272.1 vs. uniprot
Match: A0A1H9I0B1_9GAMM (Pseudouridine synthase n=1 Tax=Amphritea atlantica TaxID=355243 RepID=A0A1H9I0B1_9GAMM)

HSP 1 Score: 171 bits (433), Expect = 1.410e-48
Identity = 87/176 (49.43%), Postives = 118/176 (67.05%), Query Frame = 0
Query:  153 DCLLTRVQSRWPTARHVHRLDQDTSGLVVMALTPEAAREICRQFRERVPSKTYTAIVEGRMAKTAKGGEVVAKIRPDRDNRPRQIFDEDGGNEARTLWKRVKREDDRTTVCFTPVTGRTHQIRMHAKFLGHPIMGDSLYGTEQGRAKSDRLLLHARQLSFNHPRTGENVVFERSPP 328
            DCL  RVQ  +PTAR VHRLD  TSG++V+AL+  + R +  QF+ER   K+Y AIV GR+AK +  G V   +R D +NRP QI D   G  A+T W+ +++ DD + V  TP+TGR+HQ+R+H +FLGHPI+GD  Y T +   +S+RLLLHA  LSF+HP +GE + F    P
Sbjct:   38 DCLWRRVQQHYPTARIVHRLDYATSGVMVLALSATSHRHLSIQFQERKTDKSYQAIVAGRLAKNS--GTVNQPLRCDWENRPLQIIDHQQGKSAQTHWRLIEQLDDASRVELTPITGRSHQLRVHMQFLGHPILGDRFYATPRQIERSERLLLHAHSLSFSHPVSGEPLSFSSPMP 211          
BLAST of mRNA_F-serratus_M_contig707.18272.1 vs. uniprot
Match: UPI001E4AF6DC (RluA family pseudouridine synthase n=1 Tax=Amphritea pacifica TaxID=2811233 RepID=UPI001E4AF6DC)

HSP 1 Score: 170 bits (431), Expect = 2.810e-48
Identity = 85/176 (48.30%), Postives = 116/176 (65.91%), Query Frame = 0
Query:  153 DCLLTRVQSRWPTARHVHRLDQDTSGLVVMALTPEAAREICRQFRERVPSKTYTAIVEGRMAKTAKGGEVVAKIRPDRDNRPRQIFDEDGGNEARTLWKRVKREDDRTTVCFTPVTGRTHQIRMHAKFLGHPIMGDSLYGTEQGRAKSDRLLLHARQLSFNHPRTGENVVFERSPP 328
            DCL  RVQ  +PTAR VHRLD  TSG++V+AL   + R +  QF+ER   K+Y A+V G++AK +  G +   +R D DNRP QI D   G  A+T W+ ++  DD   V  TP+TGR+HQ+R+H +FLGHPI+GD  Y T     +S+RLLLHAR L+F+HP +GE++ F    P
Sbjct:   38 DCLWRRVQQHYPTARIVHRLDYATSGVMVLALNAASHRHLSIQFQERKTGKSYQAVVAGQLAKNS--GTINQPLRCDWDNRPLQIIDHQQGKSAQTHWRLIEPLDDACRVELTPITGRSHQLRVHMQFLGHPILGDRFYATPSQIERSERLLLHARSLTFSHPVSGESLTFSSPVP 211          
BLAST of mRNA_F-serratus_M_contig707.18272.1 vs. uniprot
Match: A0A1G9MQX7_9PROT (Ribosomal large subunit pseudouridine synthase A n=1 Tax=Maricaulis salignorans TaxID=144026 RepID=A0A1G9MQX7_9PROT)

HSP 1 Score: 171 bits (432), Expect = 2.940e-48
Identity = 87/176 (49.43%), Postives = 115/176 (65.34%), Query Frame = 0
Query:  153 DCLLTRVQSRWPTARHVHRLDQDTSGLVVMALTPEAAREICRQFRERVPSKTYTAIVEGRMAKTAKGGEVVAKIRPDRDNRPRQIFDEDGGNEARTLWKRVKREDDRTTVCFTPVTGRTHQIRMHAKFLGHPIMGDSLYGTEQGRAKSDRLLLHARQLSFNHPRTGENVVFERSPP 328
            DCL  RV++++PTA  +HRLD DTSGL+V+ALTP A   I +QF +R+  KTY A+V G+MA+ +  G +   ++ D  NRP+Q  D   G  A T W+ ++   DRT +C TP+TGRTHQ+R+H  FLGHPI+GD+LY  E   A SDRL LHA  L F HP  G  V F+   P
Sbjct:   51 DCLEARVRTQYPTATMIHRLDMDTSGLIVLALTPGAHAHIGKQFEKRLTRKTYIALVWGQMAQAS--GRIDQPMKSDWPNRPKQHVDPVDGRAAVTDWQVLETGPDRTRLCLTPLTGRTHQLRVHMAFLGHPILGDNLYAPEDALAASDRLCLHAGTLEFRHPDGGAPVRFDSPAP 224          
BLAST of mRNA_F-serratus_M_contig707.18272.1 vs. uniprot
Match: UPI001C07D4FB (RluA family pseudouridine synthase n=1 Tax=Amphritea atlantica TaxID=355243 RepID=UPI001C07D4FB)

HSP 1 Score: 169 bits (428), Expect = 7.890e-48
Identity = 86/176 (48.86%), Postives = 116/176 (65.91%), Query Frame = 0
Query:  153 DCLLTRVQSRWPTARHVHRLDQDTSGLVVMALTPEAAREICRQFRERVPSKTYTAIVEGRMAKTAKGGEVVAKIRPDRDNRPRQIFDEDGGNEARTLWKRVKREDDRTTVCFTPVTGRTHQIRMHAKFLGHPIMGDSLYGTEQGRAKSDRLLLHARQLSFNHPRTGENVVFERSPP 328
            DCL  RVQ R+PTA  VHRLD  TSG++V+ L+ E+ R +  QF+ER+  K Y AIV+GR+ + +  G V   +R D DNRP QI D + G  A+T W+ ++   + T V  TP+TGR+HQ+R+H ++LGHPI+GD  Y     R +S+RLLLHA  LSFNHP T E + F  S P
Sbjct:   38 DCLWRRVQQRFPTALIVHRLDYPTSGIMVLGLSRESHRHLSIQFQERLTEKRYQAIVDGRLPRAS--GTVDQPLRCDWDNRPLQIIDHEQGKPAQTHWQVLEYLTNATRVELTPITGRSHQLRVHMQYLGHPILGDRFYANPDQRTRSERLLLHAESLSFNHPATQERLSFSASCP 211          
BLAST of mRNA_F-serratus_M_contig707.18272.1 vs. uniprot
Match: A0A2E5DZI3_9BACT (RNA pseudouridine synthase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E5DZI3_9BACT)

HSP 1 Score: 168 bits (426), Expect = 1.570e-47
Identity = 83/176 (47.16%), Postives = 117/176 (66.48%), Query Frame = 0
Query:  153 DCLLTRVQSRWPTARHVHRLDQDTSGLVVMALTPEAAREICRQFRERVPSKTYTAIVEGRMAKTAKGGEVVAKIRPDRDNRPRQIFDEDGGNEARTLWKRVKREDDRTTVCFTPVTGRTHQIRMHAKFLGHPIMGDSLYGTEQGRAKSDRLLLHARQLSFNHPRTGENVVFERSPP 328
            DCL+ R Q+ +P AR VHRLD+DTSGL+V+A   +  RE+ RQF++R   KTY AI  G +A     G + A IR D DN PRQ+ D+  G  ++T W  ++R DD T +   P+TGR+HQ+R+H + +GHPI+GD LY  ++ RA+ DRL+LHA  L F HP +G+ ++FE   P
Sbjct:   38 DCLVARAQADFPGARIVHRLDRDTSGLIVLARDADTHRELSRQFQDREVEKTYEAIAGGILA--IDEGMIDAAIRKDMDNPPRQMIDDVQGRPSKTRWMVMERGDDCTRIQLFPLTGRSHQLRLHLQSIGHPILGDDLYAPDEMRARVDRLMLHATILEFTHPSSGKRLIFESPAP 211          
BLAST of mRNA_F-serratus_M_contig707.18272.1 vs. uniprot
Match: A0A7W2BME3_9HYPH (RNA pseudouridine synthase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7W2BME3_9HYPH)

HSP 1 Score: 169 bits (427), Expect = 1.790e-47
Identity = 86/173 (49.71%), Postives = 111/173 (64.16%), Query Frame = 0
Query:  152 VDCLLTRVQSRWPTARHVHRLDQDTSGLVVMALTPEAAREICRQFRERVPSKTYTAIVEGRMAKTAKGGEVVAKIRPDRDNRPRQIFDEDGGNEARTLWKRVKREDDRTTVCFTPVTGRTHQIRMHAKFLGHPIMGDSLYGTEQGRAKSDRLLLHARQLSFNHPRTGENVVFE 324
            +DCL+TR+  R+P AR VHRLD DTSG++V+A+ P A R +  QF  R   KTY A+V+G +A  A  G V   IR D  NRPRQ+ D   G  A T W+ + REDDR+ +   P+TGR+HQ+R+H + LGHPI+GD+LY  E  R    RL LHA  LS  HP  GE + FE
Sbjct:   53 LDCLITRLHKRYPQARIVHRLDLDTSGVMVIAMNPAAHRHLGLQFERRHVEKTYIALVDGNVA--ADSGRVDLPIRVDWPNRPRQMIDHAEGRSAVTDWQVLAREDDRSRIALRPLTGRSHQLRLHMRELGHPILGDTLYAPEAARKAMPRLCLHALNLSLYHPDGGERLTFE 223          
BLAST of mRNA_F-serratus_M_contig707.18272.1 vs. uniprot
Match: A0A2E2KKK0_9GAMM (RNA pseudouridine synthase n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A2E2KKK0_9GAMM)

HSP 1 Score: 167 bits (424), Expect = 2.610e-47
Identity = 88/171 (51.46%), Postives = 112/171 (65.50%), Query Frame = 0
Query:  153 DCLLTRVQSRWPTARHVHRLDQDTSGLVVMALTPEAAREICRQFRERVPSKTYTAIVEGRMAKTAKGGEVVAKIRPDRDNRPRQIFDEDGGNEARTLWKRVKREDDRTTVCFTPVTGRTHQIRMHAKFLGHPIMGDSLYGTEQGRAKSDRLLLHARQLSFNHPRTGENVVF 323
            DCL  RVQ+ +PTAR VHRLD  TSGL+V+ALT EA R+I R F+ER   K Y AI+ G+ ++  K G V   +  D +NRP QI D + G  A T WK    +   T V  TP+TGR+HQ+R+H + +GHPI+GD  Y  E  +A SDRLLLHA +LSF HP TG+ V F
Sbjct:   32 DCLWRRVQAEFPTARVVHRLDYATSGLMVLALTLEAQRDISRSFQERKTGKLYQAIISGKPSE--KQGSVDLPLICDWENRPLQIVDHEHGKNALTHWKATGEDSRGTRVELTPITGRSHQLRVHMQAMGHPIIGDRFYADEDSKALSDRLLLHAERLSFPHPETGKVVEF 200          
BLAST of mRNA_F-serratus_M_contig707.18272.1 vs. uniprot
Match: A0A657BC44_9GAMM (Pseudouridine synthase n=2 Tax=Oleiphilus TaxID=141450 RepID=A0A657BC44_9GAMM)

HSP 1 Score: 166 bits (420), Expect = 1.090e-46
Identity = 91/180 (50.56%), Postives = 116/180 (64.44%), Query Frame = 0
Query:  153 DCLLTRVQSRWPTARHVHRLDQDTSGLVVMALTPEAAREICRQFRERVPSKTYTAIVEGRMAKTAKGGEVVAKIRPDRDNRPRQIFDEDGGNEARTLWKRVKREDDRTTVCFTPVTGRTHQIRMHAKFLGHPIMGDSLYGTEQGRAKSDRLLLHARQLSFNHPRTGENVVFERSPPSPPF 332
            DC++ RVQ  +PTAR VHRLD  TSGL+V+AL+ +  RE+ RQF +R  SK Y A+V G +   A  G+V   +  D  NRP+Q+  EDG   A T +K + RE D T V  TPVTGRTHQ+R+H   LGHPI+GD LY      A SDRL+LHA QL F HP +GE++ F+   P  PF
Sbjct:   35 DCVVRRVQQTFPTARIVHRLDCATSGLMVLALSADGHRELSRQFHDREVSKAYVALVYGTVE--ADEGQVRLPLMTDWPNRPKQMISEDG-KPAHTDYKVLSRESDHTRVLLTPVTGRTHQLRVHMLSLGHPILGDRLYAAGDVLAASDRLMLHAWQLGFMHPESGESLFFD---PEAPF 208          
BLAST of mRNA_F-serratus_M_contig707.18272.1 vs. uniprot
Match: UPI000833CE2D (pseudouridine synthase n=1 Tax=Neptuniibacter marinus TaxID=1806670 RepID=UPI000833CE2D)

HSP 1 Score: 166 bits (420), Expect = 1.090e-46
Identity = 90/173 (52.02%), Postives = 114/173 (65.90%), Query Frame = 0
Query:  153 DCLLTRVQSRWPTARHVHRLDQDTSGLVVMALTPEAAREICRQFRERVPSKTYTAIVEGRMAKTAKGGEVVAKIRPDRDNRPRQIFDEDGGNEARTLWKRVKREDDR--TTVCFTPVTGRTHQIRMHAKFLGHPIMGDSLYGTEQGRAKSDRLLLHARQLSFNHPRTGENVVF 323
            DCL  RVQ+ +PTAR VHRLD  TSG++V+ALT EA R + R F+ER   K Y AI+ G   ++   G V   +R D +NRP QI D + G  A T WK + +E     T V  TP+TGR+HQ+R+H + +GHPI+GD  Y   +G+AKSDRLLLHA QLSF HP TGE V F
Sbjct:   32 DCLWRRVQTIFPTARVVHRLDYATSGVMVLALTLEAQRSLNRSFQERQTHKRYQAIISGTPEQSE--GSVELPLRCDWENRPLQIVDFEQGKNALTHWKVLAKESSEQDTRVELTPITGRSHQLRVHMQAMGHPILGDRFYADTEGQAKSDRLLLHAEQLSFPHPITGEFVEF 202          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig707.18272.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4R0_ECTSI2.480e-17676.05Ribosomal large subunit pseudouridine synthase A n... [more]
A0A1H9I0B1_9GAMM1.410e-4849.43Pseudouridine synthase n=1 Tax=Amphritea atlantica... [more]
UPI001E4AF6DC2.810e-4848.30RluA family pseudouridine synthase n=1 Tax=Amphrit... [more]
A0A1G9MQX7_9PROT2.940e-4849.43Ribosomal large subunit pseudouridine synthase A n... [more]
UPI001C07D4FB7.890e-4848.86RluA family pseudouridine synthase n=1 Tax=Amphrit... [more]
A0A2E5DZI3_9BACT1.570e-4747.16RNA pseudouridine synthase n=1 Tax=Phycisphaerae b... [more]
A0A7W2BME3_9HYPH1.790e-4749.71RNA pseudouridine synthase n=1 Tax=Hyphomicrobiale... [more]
A0A2E2KKK0_9GAMM2.610e-4751.46RNA pseudouridine synthase n=1 Tax=Oceanospirillac... [more]
A0A657BC44_9GAMM1.090e-4650.56Pseudouridine synthase n=2 Tax=Oleiphilus TaxID=14... [more]
UPI000833CE2D1.090e-4652.02pseudouridine synthase n=1 Tax=Neptuniibacter mari... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 140..327
e-value: 6.7E-54
score: 184.6
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 151..324
NoneNo IPR availablePANTHERPTHR21600:SF43RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Acoord: 151..324
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 18..47
NoneNo IPR availablePANTHERPTHR21600:SF43RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Acoord: 18..47
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 166..278
e-value: 1.9E-22
score: 80.1
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 169..183
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 19..328

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig707contigF-serratus_M_contig707:189503..203978 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig707.18272.1mRNA_F-serratus_M_contig707.18272.1Fucus serratus malemRNAF-serratus_M_contig707 189419..204266 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig707.18272.1 ID=prot_F-serratus_M_contig707.18272.1|Name=mRNA_F-serratus_M_contig707.18272.1|organism=Fucus serratus male|type=polypeptide|length=333bp
MVTSTSNDSGATNPSLIEGELNVVYSDDDIVVLDKPAGLRTVPGKAMGPD
TETKAHTEWHSGTKRQRQEFWTGVVHSTCSSLLKDDVTEGDEEFRGHLRR
LTRENNVPRKRVKFDNYMGVTLGLEGDERDRISARLWDAVDSRLKLEAGP
GVDCLLTRVQSRWPTARHVHRLDQDTSGLVVMALTPEAAREICRQFRERV
PSKTYTAIVEGRMAKTAKGGEVVAKIRPDRDNRPRQIFDEDGGNEARTLW
KRVKREDDRTTVCFTPVTGRTHQIRMHAKFLGHPIMGDSLYGTEQGRAKS
DRLLLHARQLSFNHPRTGENVVFERSPPSPPF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom_sf