prot_F-serratus_M_contig69.17959.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig69.17959.1
Unique Name	prot_F-serratus_M_contig69.17959.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	613

Homology

[Close]

BLAST of mRNA_F-serratus_M_contig69.17959.1 vs. uniprot
Match: A0A6H5KAW2_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW2_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 1.460e-107
Identity = 177/230 (76.96%), Postives = 200/230 (86.96%), Query Frame = 0

Query:  303 NPYIVFVGQLAFSTTAKAVEDHFRTRGGVEGKISVRLLTRKGTNPPRSKGMAFVEVEDPETAYRCLGLHHSRLDGRLLNVEQTSGGGKEKKGERIKEKRGEQKELMKSVVQRVLGEFIEAGRLSENELDAAAKGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELAFRADPEQLDAGARNWLRDERVKDTARHAADKGGGKGFEKAKARNAAVGGGGDGRG 532
            NP+IVFVGQLAFSTTA+ VE+HFRTRGG+EG ISVRLLTRKGTNPP+S+GMAF++V+D E+AY+CL LHHSRLDGRLLNVE+TSGGGKEKKGERI+EKRG+QKE MKSVVQRVLGEFI AGRL + ELD AA+GVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHEL FR+DPE L+AGAR+WL DE++K   R + DK   K   KA+     VGGGG G G
Sbjct:  193 NPFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPQSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGKEKKGERIQEKRGQQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELCFRSDPETLEAGARDWLDDEKIKAGGR-SRDKE--KAARKARGERVNVGGGGRGSG 419

[Close]

BLAST of mRNA_F-serratus_M_contig69.17959.1 vs. uniprot
Match: D8LGT1_ECTSI (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT1_ECTSI)

HSP 1 Score: 338 bits (866), Expect = 6.440e-106
Identity = 170/223 (76.23%), Postives = 193/223 (86.55%), Query Frame = 0

Query:  303 NPYIVFVGQLAFSTTAKAVEDHFRTRGGVEGKISVRLLTRKGTNPPRSKGMAFVEVEDPETAYRCLGLHHSRLDGRLLNVEQTSGGGKEKKGERIKEKRGEQKELMKSVVQRVLGEFIEAGRLSENELDAAAKGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELAFRADPEQLDAGARNWLRDERVKDTARHAADKGGGKGFEKAKARNAAVG 525
            NP+IVFVGQLAFSTTA+ VE+HFRTRGG+EG ISVRLLTRKGTNPP+S+GMAF++V+D E+AY+CL LHHSRLDGRLLNVE+TSGGGKE+KGERI+EKRGEQKE MKSVVQRVLGEFI AGRL + ELD AA+GVLEKMEAKVMERAVKDYCDKPDRLEL NPSAWFTHHAHEL FR+DPE L+AGAR+WL DE++K          GG+  +K KA   A G
Sbjct:  178 NPFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPKSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGKERKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVLEKMEAKVMERAVKDYCDKPDRLELQNPSAWFTHHAHELCFRSDPETLEAGARDWLNDEKIK---------AGGRNRDKEKAARKARG 391

[Close]

BLAST of mRNA_F-serratus_M_contig69.17959.1 vs. uniprot
Match: A0A836CEL8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEL8_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.580e-50
Identity = 105/180 (58.33%), Postives = 126/180 (70.00%), Query Frame = 0

Query:  299 GVHANPYIVFVGQLAFSTTAKAVEDHFRTRGGVEGKISVRLLTRKGTNPPRSKGMAFVEVEDPETAYRCLGLHHSRLDGRLLNVEQTSGGGKEKKGERIKEKRGEQKELMKSVVQRVLGEFIEAGRLSENELDAAAKGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELAF 478
            G  A P +VFVGQL+F TT   VE+HFR RGGVEG++ VRLLT   TN  RS+GMAFVE E PET Y+CL LHH+RLDGR+LNVE+TSGG  +   ++I   R EQK  MK  V R++GEFI  G L E ELD  A  VLEK E KV+E+A+ DYC KPD+  L N SA+F H  H +AF
Sbjct:  161 GKKAAPLVVFVGQLSFKTTEAEVEEHFRKRGGVEGELKVRLLTNP-TNG-RSRGMAFVETESPETLYQCLTLHHTRLDGRILNVERTSGGKGDAHKQKISSLREEQKAHMKDTVARIMGEFIAKGLLKEGELDVDAVRVLEKFEGKVVEKALSDYCVKPDKATLRNKSAYFVHITHGIAF 338

[Close]

BLAST of mRNA_F-serratus_M_contig69.17959.1 vs. uniprot
Match: B8C2M8_THAPS (RRM domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2M8_THAPS)

HSP 1 Score: 125 bits (315), Expect = 3.290e-27
Identity = 71/185 (38.38%), Postives = 105/185 (56.76%), Query Frame = 0

Query:  304 PYIVFVGQLAFSTTAKAVEDHFRTRGG----VEGKISVRLLTRKGTNPPRSKGMAFVEVEDPETAYRCLGLHHSRLDGRLLNVEQTSGGGKEKKGERIKEKRGEQKELMKSVVQRVLGEFIEAGRLSENELDAAAKGVLEKMEAKVMERAVKDYCDKP-------------DRLELHNPSAWFTH 471
            PYIVF+GQL++STT   + DHF    G     +  + +RLLT   T   +S+GMAFVE++ PE  Y CL +H + LDGR +NVE+T+GGG   K  +I   R EQ   +   +  +L E+++ G + E+ELD     + ++  A V+ERA+ +Y D+              +  EL NPSA+ TH
Sbjct:  193 PYIVFIGQLSYSTTTDMIYDHFHNTLGPDVITKESVKIRLLTDSKTK--KSRGMAFVELDSPEAMYECLRMHLTHLDGRRINVERTAGGGAALKKSKITSYREEQTTYISQTMDHILSEYMKKGDIDEDELDEGVIALCKRHSATVVERALNEYVDEKKVRKERKETLGEKEEEELRNPSAFLTH 375

[Close]

BLAST of mRNA_F-serratus_M_contig69.17959.1 vs. uniprot
Match: A0A7S4JM15_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JM15_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.460e-27
Identity = 71/178 (39.89%), Postives = 112/178 (62.92%), Query Frame = 0

Query:  302 ANPYIVFVGQLAFSTTAKAVEDHFRTRGGVEGK------ISVRLLTRKGTNPPRSKGMAFVEVEDPETAYRCLGLHHSRLDGRLLNVEQTSGGGKE---KKGERIKEKRGEQKELMKSVVQRVLGEFIEAGRLSENELDAAAKGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFT 470
            ++PY++F+GQL++ TT + +  HF+   G + K      + +RLLT   T   RS+G+AFVE EDPET Y CL LHH+ LDGR +NVE+++GG KE   +KG +I + R EQ+E M   + +++ +F   G +SE ELD     ++++  A ++E A+ +Y ++     L NPSA+ T
Sbjct:  231 SSPYVLFIGQLSYHTTKEGLFRHFQRELGKDKKEITEETLRIRLLTDSKTG--RSRGLAFVETEDPETMYACLQLHHTTLDGRCINVERSAGGKKESETRKG-KITQYRKEQEEYMSGTIDKIIADFQSRGDISEGELDEGVVALMKRNSAALVETALAEYVEERGE-SLDNPSAYLT 404

[Close]

BLAST of mRNA_F-serratus_M_contig69.17959.1 vs. uniprot
Match: B7FSS2_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSS2_PHATC)

HSP 1 Score: 108 bits (271), Expect = 1.340e-22
Identity = 62/147 (42.18%), Postives = 94/147 (63.95%), Query Frame = 0

Query:  304 PYIVFVGQLAFSTTAKAVEDHFRTRGGVEGKIS-----VRLLTRKGTNPPRSKGMAFVEVEDPETAYRCLGLHHSRLDGRLLNVEQTSGGGK--EKKGERIKEKRGEQKELMKSVVQRVLGEFIEAGRLSENELDAAAKGVLEKMEA 443
            PYIVFVGQL++ TT  ++  H R   G E K++     +RLLT   T   +S+GMAFVEV DPE  Y CL LHH+ L+GR LNVE+T+GG K  +++  +I+++R EQ++   +VV  +L E  ++G +  +E+D    G+ ++  A
Sbjct:  142 PYIVFVGQLSYDTTKDSLFQHIRKEIGTEHKVNPSTVKIRLLTDAKTK--KSRGMAFVEVPDPEMLYACLKLHHTFLEGRRLNVERTAGGRKSSDQRKTKIQQRRQEQEQYFGTVVDNMLQEHYKSGEIKPHEIDDGVVGLCKRHSA 286

[Close]

BLAST of mRNA_F-serratus_M_contig69.17959.1 vs. uniprot
Match: A0A6U9Z0P3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9Z0P3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.420e-22
Identity = 70/186 (37.63%), Postives = 107/186 (57.53%), Query Frame = 0

Query:  294 KADGGGVHANPYIVFVGQLAFSTTAKAVEDHFRTRGG-------VEGKISVRLLTRKGTNPPRSKGMAFVEVEDPETAYRCLGLHHSRLDGRLLNVEQTSGGGK--EKKGERIKEKRGEQKELMKSVVQRVLGEFIEAGRLSENELDAAAKGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFT 470
            K  G G H +P I FVGQL++ TT+  + +H  +  G       ++    +RLLT   T   RS+GMAFVEV+DPE  Y  L LH + L GR +NVE+++GG K  E +  +++  R EQ      +V+ +L E+ + G L E+ELD     V ++    V++ AV +Y +K  R +++NPSA+ T
Sbjct:  194 KTMGPGSHRDPLIAFVGQLSYETTSDDLLEHICSNLGDDYPASKIKKMTKIRLLT--DTKTKRSRGMAFVEVDDPEFLYALLKLHQTYLKGRRINVERSAGGKKYSEARKSKLENYRKEQGAFFAEIVENILAEYKKTGELREDELDEGVITVCKRHSGPVVQAAVAEYMEKGGR-DMNNPSAYLT 376

[Close]

BLAST of mRNA_F-serratus_M_contig69.17959.1 vs. uniprot
Match: A0A448ZQ37_9STRA (RRM domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQ37_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.750e-22
Identity = 80/234 (34.19%), Postives = 125/234 (53.42%), Query Frame = 0

Query:  288 SVSDNRKADG--GGVHANPYIVFVGQLAFSTTAKAVEDHFRTRGGVE------GKIS-VRLLTRKGTNPPRSKGMAFVEVEDPETAYRCLGLHHSRLDGRLLNVEQTSGGGKEKKGERIKEK--RGEQKELMKSVVQRVLGEFIEAGRLSENELDAAAKGVLEKMEAKVMERAVKDYCDKPDRLELHNPSAWFTHHAHELAFRADPEQLDAGARNWLRDERVKDTARHAADKGG 510
            S+ DN+K +    G   +P I FVGQL++ TT   + DH ++  G E       KI+ +RLL+   T   +S+GMAFVEV+DPE  Y  L LH + L GR +N+E+++GG +  +  + K +  R EQ      VV+ +L E+ + G L E+ELD     V ++    V++ AV +Y +K  R +++NPSA+ T    + A     +  D G    L+  R +  A    D+ G
Sbjct:  116 SLHDNKKGEATVSGRRRDPLIAFVGQLSYETTRDDLMDHIQSHLGGEFPASQINKITKIRLLSDPQTK--KSRGMAFVEVDDPEFLYALLKLHQTYLKGRRINIERSAGGKRNSQARKSKLEHYRKEQGAYFAEVVENILAEYKQNGELREDELDEGVVSVCKRHSGPVVQAAVAEYIEKGGR-DMNNPSAYLTFLVTKFAKEGIHDVEDTGKSKTLKPTRKRKEAPPTGDQDG 346

[Close]

BLAST of mRNA_F-serratus_M_contig69.17959.1 vs. uniprot
Match: A0A7S2Q1Z8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q1Z8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 8.360e-21
Identity = 62/166 (37.35%), Postives = 91/166 (54.82%), Query Frame = 0

Query:  323 DHFRTRGGVE----GKISVRLLTRKGTNPPRSKGMAFVEVEDPETAYRCLGLHHSRLDGRLLNVEQTSGGGKEKKGERIKEKRGEQKELMKSVVQRVLGEFIEAGRLSENELDAAAKGVLEKMEAKVMERAVKDYCDKP-------------DRLELHNPSAWFTH 471
            +HF+T  G E        +RLLT   T   +S+GMAFVE+  PET Y CL LH + LDGR LNVE+T+GGGK  K  +I   R  Q   +   V ++L + ++ G + E ELD     + ++  A+V+E A+K+Y ++              +  E+ NPSA+ TH
Sbjct:    6 EHFQTNLGKEVITKETTKIRLLTDARTK--KSRGMAFVELSTPETQYECLKLHLTHLDGRRLNVERTTGGGKAAKKSKISHFRESQSAYISQTVDQILSDHMKNGDIMEGELDEGVIALCKRHSAQVVEHALKEYAEEKKVRKERKEELGEKEEEEMRNPSAFLTH 169

[Close]

BLAST of mRNA_F-serratus_M_contig69.17959.1 vs. uniprot
Match: A0A7S0GDR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GDR5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.930e-18
Identity = 47/110 (42.73%), Postives = 71/110 (64.55%), Query Frame = 0

Query:  303 NPYIVFVGQLAFSTTAKAVEDHFRTR--------GGVEGK------ISVRLLTRKGTNPPRSKGMAFVEVEDPETAYRCLGLHHSRLDGRLLNVEQTSGGGKEKKGERIK 398
            +PYI+F+GQLA++TT + + +HF T+           +GK      + +RLLT K T   +SKGMAF+EV +PE  Y+CL LH + +DGR +NVE+++GGGK  +  + K
Sbjct:   53 DPYILFIGQLAYTTTKQMLFEHFETKINNDVDNIASSKGKPVTTESLQIRLLTDKKTK--KSKGMAFLEVSNPELMYQCLSLHRTAIDGRRINVERSAGGGKSSEARKTK 160

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig69.17959.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig69.17959.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KAW2_9PHAE	1.460e-107	76.96	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D8LGT1_ECTSI	6.440e-106	76.23	RRM domain-containing protein (Fragment) n=1 Tax=E...	[more]
A0A836CEL8_9STRA	1.580e-50	58.33	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
B8C2M8_THAPS	3.290e-27	38.38	RRM domain-containing protein n=1 Tax=Thalassiosir...	[more]
A0A7S4JM15_9STRA	4.460e-27	39.89	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
B7FSS2_PHATC	1.340e-22	42.18	Predicted protein n=3 Tax=Phaeodactylum tricornutu...	[more]
A0A6U9Z0P3_9STRA	1.420e-22	37.63	Hypothetical protein n=1 Tax=Pseudo-nitzschia aust...	[more]
A0A448ZQ37_9STRA	2.750e-22	34.19	RRM domain-containing protein n=1 Tax=Pseudo-nitzs...	[more]
A0A7S2Q1Z8_9STRA	8.360e-21	37.35	Hypothetical protein (Fragment) n=1 Tax=Skeletonem...	[more]
A0A7S0GDR5_9STRA	2.930e-18	42.73	Hypothetical protein (Fragment) n=1 Tax=Proboscia ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 238..258
None	No IPR available	PANTHER	PTHR23236:SF51	EUKARYOTIC INITIATION FACTOR 4B	coord: 112..453
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 112..453
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 306..383 e-value: 6.6E-11 score: 52.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 307..380 e-value: 1.3E-7 score: 31.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 305..387 score: 12.015
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 220..401 e-value: 2.1E-17 score: 65.5
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 298..389

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig69	contig	F-serratus_M_contig69:93797..97035 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig69.17959.1	mRNA_F-serratus_M_contig69.17959.1	Fucus serratus male	mRNA	F-serratus_M_contig69 93672..97035 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig69.17959.1 ID=prot_F-serratus_M_contig69.17959.1|Name=mRNA_F-serratus_M_contig69.17959.1|organism=Fucus serratus male|type=polypeptide|length=613bp
MTKVLSKGSGDDETPTSPPVDPGPQGLPLDGMNAKERRATKRRAEQAAAA
RPVSGSNEVGGDIGTTNVAPVKTVTAVLQGHKGVESPQQGASATQNVGMN
AKERRAARREAERNSTSKTSSSEVASGDDRGSPAVIEAGDGTNAKARRAE
KRAAARAAAETAASEISADTGKGTAAAAPSPKTASTSVGTTAKTMTAKDR
RAARRAAAREALVAAPPVTPNDGDNNNTNNGSNKGEMTSKERRLLRRQEE
RKKREREEQGEGERGNIRGKQAPQAGSGPAKRRKGGGSVSDNRKADGGGV
HANPYIVFVGQLAFSTTAKAVEDHFRTRGGVEGKISVRLLTRKGTNPPRS
KGMAFVEVEDPETAYRCLGLHHSRLDGRLLNVEQTSGGGKEKKGERIKEK
RGEQKELMKSVVQRVLGEFIEAGRLSENELDAAAKGVLEKMEAKVMERAV
KDYCDKPDRLELHNPSAWFTHHAHELAFRADPEQLDAGARNWLRDERVKD
TARHAADKGGGKGFEKAKARNAAVGGGGDGRGRFGGGRGRVGAGTIGGAD
SMNARPSDVLVGRAAGSRPPERLQQTTDAPHGSGPGGEGAAVSPPTPDDS
ASERRPGSGGDGG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf