prot_F-serratus_M_contig660.17584.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig660.17584.1
Unique Nameprot_F-serratus_M_contig660.17584.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length215
Homology
BLAST of mRNA_F-serratus_M_contig660.17584.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 6.030e-125
Identity = 177/214 (82.71%), Postives = 202/214 (94.39%), Query Frame = 0
Query:    1 MEGSSIQKRLSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSREGMTMLVEKVDDPVDQVFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVSRFYGMQRGQVCKITRPSETAGRYVTYRLCI 214
            MEGS    RLSDEGHK+YRIRQTCMKMLEKRGYNVL+EH+SMTSE F + +GP+P+R  +T+LVEKVDDP+DQ+FVFFP+DEKVGVKPIRSYS+KML E+VK+AIIV+KGGITPFARSAI ELCAQREVQVEDFKD+ELMLDITEHTLVP+H VL++EQKA+LLKRYKLKDTQLPRIQ+TDPV+RF+GMQ+GQVCKITRPSETAGRYVTYRLCI
Sbjct:    1 MEGSGP--RLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 212          
BLAST of mRNA_F-serratus_M_contig660.17584.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA)

HSP 1 Score: 285 bits (730), Expect = 3.080e-95
Identity = 142/209 (67.94%), Postives = 175/209 (83.73%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHIS----MTSEKFCEAFGPDPSREGMTMLVEKVDDPVDQVFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVSRFYGMQRGQVCKITRPSETAGRYVTYRLCI 214
            LS EG KL+RIR+TC+KML KRGYNV  EHIS      +++F E FG +PSRE MT+LVEKVDDP D++FVFFP++EKVGVK IR+Y D+M  E+V+K+IIVV+GG+TP +R A  +LC QR VQ+EDFKD+ELM+DIT+H LVP+H VL  E+KA+LLKRYKL DTQLPRI +TDPV+R+YG+QRGQV KI RPSETAGRYVTYRLC+
Sbjct:    5 LSLEGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQVLNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGLQRGQVVKIIRPSETAGRYVTYRLCM 213          
BLAST of mRNA_F-serratus_M_contig660.17584.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA)

HSP 1 Score: 243 bits (620), Expect = 1.250e-78
Identity = 122/202 (60.40%), Postives = 159/202 (78.71%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSREGMTMLVEKVDDPVDQVFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVSRFYGMQRGQVCKITRPSETAGRYVTYR 211
            L+ E  KL+R+R+T +KML  RGY V +E +  T E F   FG +P+R+ MT+LVEKVDDP D +FVF+PED KVGVKPIR+Y ++M  E+V KAI++V+ GITPFA+ A+ E+  +   +++ FK++EL++DITEHTLVP H VLT E+K  LLKRYKLKDTQLPR+Q +DP++R+YGM RGQV KI RPSETAGRYVTYR
Sbjct:    3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGMSRGQVVKIIRPSETAGRYVTYR 202          
BLAST of mRNA_F-serratus_M_contig660.17584.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD)

HSP 1 Score: 242 bits (617), Expect = 3.680e-78
Identity = 121/202 (59.90%), Postives = 159/202 (78.71%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSREGMTMLVEKVDDPVDQVFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVSRFYGMQRGQVCKITRPSETAGRYVTYR 211
            L+ E  +LYR+R+T +KML  RGY V +  + MT E F   FG +P+RE MT+LVEK+DDP D +FVFFPED KVGVKPIR++ ++M  E+V KAI+VV+ GITPFAR A+ E+  +   ++E FK++EL++DITEHTLVP H VL  ++KA LLKRY++KD+QLPR+Q TDP++R+YG+ RGQV KI RPSETAGRYVTYR
Sbjct:    4 LTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGITRGQVVKIIRPSETAGRYVTYR 203          
BLAST of mRNA_F-serratus_M_contig660.17584.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC)

HSP 1 Score: 239 bits (611), Expect = 3.210e-77
Identity = 119/202 (58.91%), Postives = 159/202 (78.71%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSREGMTMLVEKVDDPVDQVFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVSRFYGMQRGQVCKITRPSETAGRYVTYR 211
            L+ E  +LYR+R+T +KML  RGY V  + +  T++ F   FG +P+RE MT+LVEKVDDP D +FVF+P+D KVGVKPIR+Y ++M  E+V KAI++V+ GITPFA+ A+ E+  +   +++ FK++EL++DITEHTLVP H VLT E+K  LLKRYKLKD+QLPR+Q +DP++R+YGM RGQV KI RPSETAGRYVTYR
Sbjct:    6 LNPEASRLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFGENPTREMMTILVEKVDDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMTRGQVVKIIRPSETAGRYVTYR 205          
BLAST of mRNA_F-serratus_M_contig660.17584.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH)

HSP 1 Score: 239 bits (611), Expect = 3.540e-77
Identity = 117/205 (57.07%), Postives = 162/205 (79.02%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSREGMTMLVEKVDDPVDQVFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVSRFYGMQRGQVCKITRPSETAGRYVTYRLCI 214
            L+ E  K++R+R+TC+KML KRGY V +  + M++++F + FG  PSR+ +T+L EK DDP DQ+FVFFPEDEKVGV PI+ Y  +M   +V +AIIVVK  +TPFAR+A+ E+ + R  +VE F+D+EL++DITEH LVP+H VLT +QK +LL+RY+LK +QLPRIQ  DP++R+ G+++GQV KI RPSETAGRYVTYR+C+
Sbjct:    8 LNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEHIVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQGQVVKIVRPSETAGRYVTYRICV 211          
BLAST of mRNA_F-serratus_M_contig660.17584.1 vs. uniprot
Match: B8C1Q1_THAPS (RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1Q1_THAPS)

HSP 1 Score: 238 bits (608), Expect = 1.660e-76
Identity = 119/205 (58.05%), Postives = 159/205 (77.56%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSREGMTMLVEKVDDPVDQVFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVSRFYGMQRGQVCKITRPSETAGRYVTYRLCI 214
            L+ E  +L+R+ +T   ML KRGY V +E   MT   F + FG  PSREG+T+LVEK DD  +Q+FVFFPEDEKVGVKPI+  +D+M  E+V  AI+V++G ITPFA+ A++E+      ++E FK++EL++DITEHTLVP+H VL+  +K +LLKRY+L++TQLPRIQ  DPV+R+YGM+RGQV KI RPSETAGRYVTYR+C+
Sbjct:   24 LTPEASRLFRVYKTVSAMLSKRGYMVSREMREMTPFDFTQRFGEYPSREGLTILVEKADDETNQLFVFFPEDEKVGVKPIKILTDRMKDENVSNAILVLRGDITPFAKQAVLEM--SDSFRLEHFKEAELLVDITEHTLVPEHLVLSQNEKQELLKRYRLRETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYRICM 226          
BLAST of mRNA_F-serratus_M_contig660.17584.1 vs. uniprot
Match: A0A5D6XUM4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUM4_9STRA)

HSP 1 Score: 243 bits (621), Expect = 3.820e-76
Identity = 122/205 (59.51%), Postives = 162/205 (79.02%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSREGMTMLVEKVDDPVDQVFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVSRFYGMQRGQVCKITRPSETAGRYVTYRLCI 214
            L+ E  +L+R+R+T +KML  RGY V +  + MT E F + FG +P+RE MT+LVEK+DDP D +FVFFPED KVGVKPIR+Y ++M  E+V KAI+VV+ GITPFAR A+ E+  +   ++E FK++EL++DITEHTLVP H VL+ ++KA LLKRY++KD+QLPR+Q TDP++R+YG+ RGQV KI RPSETAGRYVTYR  I
Sbjct:    4 LTPEASRLFRVRKTTVKMLHNRGYIVSENELVMTPESFQQQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLSRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGITRGQVVKIIRPSETAGRYVTYRAVI 206          
BLAST of mRNA_F-serratus_M_contig660.17584.1 vs. uniprot
Match: A0A2P4Y6Z7_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6Z7_9STRA)

HSP 1 Score: 239 bits (610), Expect = 4.260e-76
Identity = 122/205 (59.51%), Postives = 159/205 (77.56%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSREGMTMLVEKVDDPVDQVFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVSRFYGMQRGQVCKITRPSETAGRYVTYRLCI 214
            L+ E  +LYR+R+T +KML  R Y V +  + MT E F   FG +P+RE MT+LVEK+DDP D +FVFFPED KVGVKPIR+Y ++M  E+V KAI+VV+ GITPFAR A+ E+  +   ++E FK++EL++DITEHTLVP H VL  ++KA LLKRY+++D+QLPR+Q TDP++R+YGM RGQV KI RPSETAGRYVTYR  I
Sbjct:   75 LTPEASRLYRVRKTTVKMLHNRDYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKMDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLGRDEKAALLKRYRIRDSQLPRMQVTDPIARYYGMTRGQVVKIIRPSETAGRYVTYRAVI 277          
BLAST of mRNA_F-serratus_M_contig660.17584.1 vs. uniprot
Match: B7FSY0_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSY0_PHATC)

HSP 1 Score: 237 bits (604), Expect = 7.160e-76
Identity = 121/210 (57.62%), Postives = 159/210 (75.71%), Query Frame = 0
Query:    5 SIQKRLSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSREGMTMLVEKVDDPVDQVFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVSRFYGMQRGQVCKITRPSETAGRYVTYRLCI 214
            +IQ  L+ E  +L+R+ +T   ML+KRGY V K    +T   F E FG  PSRE +T+LVEK DD  +Q+F+FFPEDEKVGVKPI+ Y+D+M AE V  AII+++  ITPFA+ A+ E+      ++E FK+SEL++DIT+H LVP H VLT  +K +LLKRY+LKD+QLPRIQ+ DPV+R+YGM+RGQV KI RPSETAGRYVTYR+C+
Sbjct:   21 TIQGGLTPEAARLFRVYRTIANMLDKRGYMVPKTLREITPSAFKERFGEYPSRENLTILVEKADDDTNQLFIFFPEDEKVGVKPIKVYTDRMRAESVSNAIIILRVDITPFAKQAVQEM--SDSFRIEHFKESELLVDITKHQLVPVHQVLTPNEKNELLKRYRLKDSQLPRIQSNDPVARYYGMRRGQVVKIIRPSETAGRYVTYRICM 228          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig660.17584.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Y9_ECTSI6.030e-12582.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLJ3_9STRA3.080e-9567.94RNA polymerase Rpb5, C-terminal domain-containing ... [more]
W4GMP1_9STRA1.250e-7860.40Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
K3WP89_GLOUD3.680e-7859.90Uncharacterized protein n=27 Tax=Oomycota TaxID=47... [more]
A0A067CT03_SAPPC3.210e-7758.91Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A482UUV9_9ARCH3.540e-7757.07DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=a... [more]
B8C1Q1_THAPS1.660e-7658.05RPB5,-like protein to RNA polymerase i n=1 Tax=Tha... [more]
A0A5D6XUM4_9STRA3.820e-7659.51Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2P4Y6Z7_9STRA4.260e-7659.51DNA-directed RNA polymerase I, II, and III subunit... [more]
B7FSY0_PHATC7.160e-7657.62Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005571RNA polymerase, Rpb5, N-terminalPFAMPF03871RNA_pol_Rpb5_Ncoord: 12..96
e-value: 1.6E-26
score: 92.7
IPR035913RPB5-like RNA polymerase subunit superfamilyGENE3D3.90.940.20coord: 142..214
e-value: 3.2E-33
score: 115.2
IPR035913RPB5-like RNA polymerase subunit superfamilySUPERFAMILY55287RPB5-like RNA polymerase subunitcoord: 139..214
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilyGENE3D3.40.1340.10coord: 10..141
e-value: 1.1E-36
score: 127.9
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilySUPERFAMILY53036Eukaryotic RPB5 N-terminal domaincoord: 12..141
IPR014381DNA-directed RNA polymerase RPB5 subunit, eukaryote/virusPIRSFPIRSF000747RPB5coord: 7..214
e-value: 7.5E-72
score: 239.1
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalPFAMPF01191RNA_pol_Rpb5_Ccoord: 142..213
e-value: 8.6E-32
score: 108.8
NoneNo IPR availablePANTHERPTHR10535:SF8coord: 12..212
NoneNo IPR availablePRODOMPD005155coord: 148..212
e-value: 1.0E-23
score: 271.0
IPR039531DNA-directed RNA polymerase subunit Rpb5-likePANTHERPTHR10535DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1coord: 12..212
IPR020609Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunitHAMAPMF_00025RNApol_RpoH_RPB5coord: 141..214
score: 20.436

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig660contigF-serratus_M_contig660:150067..163722 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig660.17584.1mRNA_F-serratus_M_contig660.17584.1Fucus serratus malemRNAF-serratus_M_contig660 149762..166647 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig660.17584.1 ID=prot_F-serratus_M_contig660.17584.1|Name=mRNA_F-serratus_M_contig660.17584.1|organism=Fucus serratus male|type=polypeptide|length=215bp
MEGSSIQKRLSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEA
FGPDPSREGMTMLVEKVDDPVDQVFVFFPEDEKVGVKPIRSYSDKMLAED
VKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVP
QHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVSRFYGMQRGQVCKITRP
SETAGRYVTYRLCI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005571RNA_pol_Rpb5_N
IPR035913RPB5-like_sf
IPR036710RNA_pol_Rpb5_N_sf
IPR014381DNA_RNA_pol_RPB5_euk/virus
IPR000783RNA_pol_subH/Rpb5_C
IPR039531Rpb5-like
IPR020609RpoH/RPB5