prot_F-serratus_M_contig656.17527.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig656.17527.1
Unique Nameprot_F-serratus_M_contig656.17527.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length116
Homology
BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: D8LMR8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR8_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 5.470e-23
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 0
Query:    1 MKSFAMVALCCAG-AQAFVPVPK-GSIGVETAQRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPYA 80
            MKSFA+ A  CAG A AF PVPK  S+G ++A    S++T + AKS+ALPFL+SPA LDG++ GDFGFDPLGLTENID+P+A
Sbjct:    1 MKSFAVFAAWCAGGALAFAPVPKVSSLGAKSAPARNSAATALDAKSKALPFLESPATLDGSMIGDFGFDPLGLTENIDIPFA 82          
BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A7S0BCB3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BCB3_9RHOD)

HSP 1 Score: 67.0 bits (162), Expect = 3.180e-11
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 0
Query:   31 QRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPYA 80
            +R +SS TVMMA S+++PFL+ P  LDG LPGD GFDPL L++NI+L YA
Sbjct:   22 RRARSSGTVMMAMSKSIPFLECPKNLDGRLPGDVGFDPLYLSDNINLQYA 71          
BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A7S2UB14_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2UB14_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.040e-10
Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 0
Query:   29 TAQRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPYA 80
            T +R +SS+ VMMAKS A+PFL++P  LDG++ GD GFDPL L+ENI+L Y+
Sbjct:   32 TTRRARSSNVVMMAKSAAIPFLEAPDKLDGSMVGDQGFDPLYLSENINLEYS 83          
BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A2V3J3F8_9FLOR (Chlorophyll a-b binding protein 7, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3F8_9FLOR)

HSP 1 Score: 65.1 bits (157), Expect = 1.530e-10
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0
Query:   30 AQRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPYA 80
            A RVQS STV M  S+A+PFLD+P  LDGTL GD GFDPL L+  I+L YA
Sbjct:   22 APRVQSRSTVTMVASKAIPFLDAPPKLDGTLVGDVGFDPLYLSNYINLDYA 72          
BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A836CGA6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.780e-10
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 0
Query:    1 MKSFAMVALCCAGAQAFVPVP--KGSIGVETAQRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPYA 80
            MKS A++    AGA AF      KG++         SSS  MMAKS+++PF   PAALDG+LPGD GFDPLGLT +ID  +A
Sbjct:    1 MKSAAVLVGALAGASAFQAASPLKGAVR-------SSSSMSMMAKSKSIPFAPQPAALDGSLPGDVGFDPLGLT-SIDFDWA 74          
BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A7S2ZL17_9RHOD (Hypothetical protein n=4 Tax=Eukaryota TaxID=2759 RepID=A0A7S2ZL17_9RHOD)

HSP 1 Score: 63.2 bits (152), Expect = 1.610e-9
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 0
Query:   30 AQRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPYA 80
            A+  +S+ TVMMA S+++PFL+ P  L+G+LPGD GFDPL L++NI+L YA
Sbjct:   70 AKTARSTGTVMMAMSKSIPFLECPKNLNGSLPGDVGFDPLYLSDNINLNYA 120          
BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: P93450_PORPP (Chlorophyll a-b binding protein of LHCII type III, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=P93450_PORPP)

HSP 1 Score: 62.4 bits (150), Expect = 1.770e-9
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 0
Query:   34 QSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPY 79
            +++   MMAKS+A+PFL++PA LDGTL GD GFDPLGL+  +D+ Y
Sbjct:   23 KNAHVTMMAKSKAIPFLEAPAKLDGTLVGDVGFDPLGLSATLDVKY 68          
BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A835Z6T4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T4_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.940e-9
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 0
Query:    1 MKSFAMVALCCAGAQAFVPVPKGSIGVETAQRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDL 77
            MK+ A++AL   GA AF+P          A  V+SSST+ M  S++LPFL  P  LDG+LPGD GFDPL L+   +L
Sbjct:    2 MKAAAVLAL-AGGAAAFMPA------TPLAGAVKSSSTMSMVASKSLPFLPKPEKLDGSLPGDVGFDPLNLSATDEL 71          
BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A7S3HZY8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3HZY8_9SPIT)

HSP 1 Score: 60.5 bits (145), Expect = 9.900e-9
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 0
Query:   34 QSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPY 79
            Q ++  MMAKS+ALPFL+ PA+LDG++PGD GFDPLGL+    L +
Sbjct:   28 QRAAVSMMAKSQALPFLEKPASLDGSMPGDVGFDPLGLSSYFPLDW 73          
BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Match: A0A7S2UVQ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVQ7_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.860e-8
Identity = 44/105 (41.90%), Postives = 54/105 (51.43%), Query Frame = 0
Query:    1 MKSFAMVALCC-AGAQAFVPVPKGSIGVETAQRVQSSSTVMMAKSRALPFLDSPAALDGTLPGDFGFDPLGLTENIDLPYAGGECPRSSAVFLCESASWGSFCLL 104
            M  +A  AL   AGA+AFV  P  S G       ++S   + AKS ALP+ ++P  LDGTLPGD GFDP G T N  LP   G   RS   +       G  C+L
Sbjct:    1 MAKYAAAALILSAGAEAFV-APASSAG-------RTSVAPLNAKSIALPWQEAPPGLDGTLPGDVGFDPFGFTNN--LPTTSGPSARSLKWYREAELIHGRICML 95          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig656.17527.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR8_ECTSI5.470e-2363.41Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A7S0BCB3_9RHOD3.180e-1162.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2UB14_9STRA1.040e-1059.62Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A2V3J3F8_9FLOR1.530e-1064.71Chlorophyll a-b binding protein 7, chloroplastic n... [more]
A0A836CGA6_9STRA1.780e-1051.22Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A7S2ZL17_9RHOD1.610e-956.86Hypothetical protein n=4 Tax=Eukaryota TaxID=2759 ... [more]
P93450_PORPP1.770e-958.70Chlorophyll a-b binding protein of LHCII type III,... [more]
A0A835Z6T4_9STRA7.940e-948.05Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A7S3HZY8_9SPIT9.900e-958.70Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
A0A7S2UVQ7_9STRA3.860e-841.90Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 47..105
e-value: 4.2E-6
score: 28.7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..115
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.653
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 37..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig656contigF-serratus_M_contig656:222890..224436 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig656.17527.1mRNA_F-serratus_M_contig656.17527.1Fucus serratus malemRNAF-serratus_M_contig656 222813..224564 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig656.17527.1 ID=prot_F-serratus_M_contig656.17527.1|Name=mRNA_F-serratus_M_contig656.17527.1|organism=Fucus serratus male|type=polypeptide|length=116bp
MKSFAMVALCCAGAQAFVPVPKGSIGVETAQRVQSSSTVMMAKSRALPFL
DSPAALDGTLPGDFGFDPLGLTENIDLPYAGGECPRSSAVFLCESASWGS
FCLLLYRECLHSVVK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023329Chlorophyll_a/b-bd_dom_sf