prot_F-serratus_M_contig65.17472.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig65.17472.1
Unique Name	prot_F-serratus_M_contig65.17472.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	230

Homology

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BLAST of mRNA_F-serratus_M_contig65.17472.1 vs. uniprot
Match: D8LMJ1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ1_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 3.510e-59
Identity = 113/208 (54.33%), Postives = 137/208 (65.87%), Query Frame = 0

Query:    5 NGGQAVWPGYGRIEDRSCAGQFSQVFIKRLDYETGYWYYENQTTGECHWDRPLEGVVPFQPAPPRLEDLIEDEAREHRQRLEREMRWKHTLTRRYIFGKQVLNGTGRRELDENHRVQALWDEAEEHAVRKGGRLSIAWQQLPVVSEEHLFGFFARHG-MRLTTLHLVGLGLAEVPSAIGQHLWSLKSLSFSSNVLRELPDGMCALTNL 211
            NG ++   GY   +D + A    Q F K +D ETGYW+YEN  TGE HWDRPLEGV P +P  PR ++ + D+AR  RQR ERE R K    RR  F K +L      E+ E  RVQ LWDEAE+HA RK G  S+AW+Q+P VSE H+FGF  R+G  ++  L LVGLGL EVP AIGQ+L SLKSLS SSN L E+PDG+C LT L
Sbjct:   10 NGHESGNSGY---DDGTLAVWHPQAFSKHVDPETGYWFYENLATGERHWDRPLEGVAPLRPKSPRPDEKLVDDARHKRQRSERESRRKDMAIRRVQFDKLLLEEGKSAEIKEAERVQGLWDEAEQHAARKEGDFSLAWKQVPSVSESHIFGFPERNGGTKIVNLRLVGLGLTEVPGAIGQNLLSLKSLSLSSNALEEIPDGLCDLTAL 214

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig65.17472.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig65.17472.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LMJ1_ECTSI	3.510e-59	54.33	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 74..228 e-value: 2.1E-13 score: 51.9
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 163..221 e-value: 2.6E-8 score: 33.5
None	No IPR available	PANTHER	PTHR16083	LEUCINE RICH REPEAT CONTAINING PROTEIN	coord: 162..226
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 156..225

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig65	contig	F-serratus_M_contig65:416320..419589 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig65.17472.1	mRNA_F-serratus_M_contig65.17472.1	Fucus serratus male	mRNA	F-serratus_M_contig65 416264..419705 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig65.17472.1 ID=prot_F-serratus_M_contig65.17472.1|Name=mRNA_F-serratus_M_contig65.17472.1|organism=Fucus serratus male|type=polypeptide|length=230bp
MTRDNGGQAVWPGYGRIEDRSCAGQFSQVFIKRLDYETGYWYYENQTTGE
CHWDRPLEGVVPFQPAPPRLEDLIEDEAREHRQRLEREMRWKHTLTRRYI
FGKQVLNGTGRRELDENHRVQALWDEAEEHAVRKGGRLSIAWQQLPVVSE
EHLFGFFARHGMRLTTLHLVGLGLAEVPSAIGQHLWSLKSLSFSSNVLRE
LPDGMCALTNLTHLNLVRNRLVTLPDRCE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt