prot_F-serratus_M_contig648.17426.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig648.17426.1
Unique Nameprot_F-serratus_M_contig648.17426.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length223
Homology
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3VCN8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VCN8_9STRA)

HSP 1 Score: 165 bits (417), Expect = 9.760e-46
Identity = 97/224 (43.30%), Postives = 136/224 (60.71%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 223
            +V ++VDD+L  ++ KA +    A + +KF++KDMG A + +   I  + + R L   Q  Y ES+IK+F  +  K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML    + W S  Q+     ++EAEY
Sbjct:   49 IVRLYVDDMLIASRQKAVIASEKAGIAEKFRIKDMGRARFILSIEIDYDIERRTLGISQKAYTESIIKKFGQENTKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEY 270          
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.240e-45
Identity = 97/225 (43.11%), Postives = 139/225 (61.78%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAKKEAK---IPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 223
            +V ++VDD+L  ++ KA +    A + +KF++KD+G A + +G  I  + + R L   Q  Y ES+IK+F  ++ AK    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+++    D RRSVSG +LML    + W S  Q+     ++EAEY
Sbjct:  104 IVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKF-GQENAKPWLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEY 325          
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 168 bits (426), Expect = 4.470e-45
Identity = 97/224 (43.30%), Postives = 137/224 (61.16%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 223
            +V ++VDD+L  ++ KA +    A + +KF++KDMG A + +G  I  + + R L   Q  Y ES+IK+F  +  K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ +  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML    + W S  Q+     ++EAEY
Sbjct:  330 IVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEY 551          
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 6.130e-45
Identity = 96/224 (42.86%), Postives = 136/224 (60.71%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 223
            +V ++VD++L  ++ KA +    A + +KF++KD+G A + +G  I  N + R L   Q  Y ES+IK F  +  K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPD++ AV  ++RF ENPG  H  + +K  +YLL TKD GI Y GQ  G  +EAY+D+D+    D RRSVSG +LML    + W S  Q+     ++EAEY
Sbjct:  298 IVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ-LGTHLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEY 519          
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 169 bits (428), Expect = 9.620e-45
Identity = 97/224 (43.30%), Postives = 138/224 (61.61%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 223
            +V ++VDD+L  ++  A +    A + +KF++KDMG A + +G  I  + + R L   Q  Y ES+IK+F  +  K    P   GV  L+KADEPQ+ E+K +MK+ PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML +  + W S  Q+     ++EAEY
Sbjct:  596 IVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEY 817          
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.110e-44
Identity = 97/224 (43.30%), Postives = 136/224 (60.71%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 223
            +V ++VDD+L  ++ KA +    A + +KF++KD+G A + +G  I  + + R L   Q  Y ES+IK+F  +  K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G   EAY+D+D+    D RRSVSG +LML    + W S  Q+     ++EAEY
Sbjct:  265 IVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEY 486          
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.230e-44
Identity = 93/216 (43.06%), Postives = 129/216 (59.72%), Query Frame = 0
Query:   10 ILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 223
            +L  ++ KA +    A + +KF++KDMG A + +G  I  + + R L      Y ES+IK+F  +  K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML    + W S  Q+     ++EAEY
Sbjct:    1 MLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEY 214          
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA)

HSP 1 Score: 167 bits (424), Expect = 3.220e-44
Identity = 97/224 (43.30%), Postives = 136/224 (60.71%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 223
            +V ++VDD+L  ++ KA +    A + +KF++KDMG A + +G  I  N + R L   Q  Y ES+IK+   +  K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ +  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML    + W S  Q+     ++EAEY
Sbjct:  574 IVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEY 795          
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3GUH8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GUH8_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.810e-43
Identity = 95/224 (42.41%), Postives = 135/224 (60.27%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 223
            +V ++VDD+L  ++ KA +    A + +KF+ KD+G A + +G  I  + + R L   Q  Y ES+IK+F  +  K    P   GV   +KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRP+I+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML    + W S  Q+     ++EAEY
Sbjct:  251 IVCLYVDDMLIASRQKAAIASVKAGIAEKFRRKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QFTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPEISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWADNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEY 472          
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Match: A0A6A3GCN4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GCN4_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.440e-43
Identity = 96/224 (42.86%), Postives = 132/224 (58.93%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDAK--KEAKIPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTTAGTSEAEY 223
            +V ++VDD+L  +          A + +KF++KDMG A + +G  I  + + R L   Q  Y ES+IK+F  +  K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+  YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML    + W S  Q+     ++EAEY
Sbjct:   49 IVCLYVDDMLIAS--------VKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPYLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVHYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEY 262          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig648.17426.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3VCN8_9STRA9.760e-4643.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0MK94_9STRA2.240e-4543.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3DSS8_9STRA4.470e-4543.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3Q8N8_9STRA6.130e-4542.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3YGI7_9STRA9.620e-4543.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3Q908_9STRA1.110e-4443.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3GI70_9STRA2.230e-4443.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0QQ26_9STRA3.220e-4443.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3GUH8_9STRA1.810e-4342.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3GCN4_9STRA2.440e-4342.86Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..74
e-value: 1.8E-10
score: 40.9
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 106..223
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 106..223

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig648contigF-serratus_M_contig648:398813..399481 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig648.17426.1mRNA_F-serratus_M_contig648.17426.1Fucus serratus malemRNAF-serratus_M_contig648 398813..399499 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig648.17426.1 ID=prot_F-serratus_M_contig648.17426.1|Name=mRNA_F-serratus_M_contig648.17426.1|organism=Fucus serratus male|type=polypeptide|length=223bp
MVVVVHVDDILAHAKDKATMDRFAAELGQKFKLKDMGDAEYYMGCHITRN
RKTRELKFDQHLYVESMIKRFDAKKEAKIPAASGVPTLSKADEPQSPEEK
EEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMK
IFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLA
KGAISWHSRMQEVTTAGTSEAEY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like