prot_F-serratus_M_contig646.17400.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig646.17400.1
Unique Nameprot_F-serratus_M_contig646.17400.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length178
Homology
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6P275_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P275_9ASTR)

HSP 1 Score: 133 bits (335), Expect = 1.420e-33
Identity = 73/166 (43.98%), Postives = 104/166 (62.65%), Query Frame = 0
Query:    2 SSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELIAKGSK 164
            SSE PQW+ A+K E+D  +    W++VD P G   LG + IFKRK+  DG ++KYK R V KGFRQ +G+ Y +S SP    +SIR+ LA+ A  + E  Q+DV+ AFL  D+ EE+Y+E P+G+  +P Q G+   L K++YGL  A   W +KF   ++  G K
Sbjct:  294 SSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDSYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 458          
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6PND6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PND6_9ASTR)

HSP 1 Score: 129 bits (324), Expect = 6.680e-33
Identity = 71/166 (42.77%), Postives = 103/166 (62.05%), Query Frame = 0
Query:    2 SSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELIAKGSK 164
            SSE PQW+ A+K E+D  +    W++VD P G   LG + IFKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ A  + E  Q+DV+ AFL  D+ EE+ +E P+G+  +P Q G+   L K++YGL  A   W +KF   ++  G K
Sbjct:   80 SSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEILMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 244          
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5R9QKQ6_9BACT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Labilibacter sediminis TaxID=2570926 RepID=A0A5R9QKQ6_9BACT)

HSP 1 Score: 129 bits (324), Expect = 7.610e-33
Identity = 69/165 (41.82%), Postives = 104/165 (63.03%), Query Frame = 0
Query:    2 SSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDS--PNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGSK 164
            SSE PQW+ A+K E++  +    W++VD P G   LG + IFKRK+  DG ++KYK R V KG+RQ +G+ Y ++ SP    +SIRM LA+ A  + +  Q+DV+ AFL  ++ EE+Y+E P+G+  S   N+V +L K++YGL  A   W +KF   ++  G K
Sbjct:   39 SSEGPQWKEAIKSEIESILQNHTWELVDLPPGSKPLGYRWIFKRKMKADGSIDKYKARLVVKGYRQKEGLDYFDTYSPVTRITSIRMVLAIAAIRNLQIHQMDVKTAFLNGELEEEIYMEQPEGFVASGYENKVCKLVKSLYGLKQAPKQWHQKFDQAMMESGFK 203          
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6PKD3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PKD3_9ASTR)

HSP 1 Score: 133 bits (334), Expect = 8.550e-33
Identity = 72/166 (43.37%), Postives = 105/166 (63.25%), Query Frame = 0
Query:    2 SSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELIAKGSK 164
            SSE PQW+ A+K E+D  +   +W++VD P G   LG + IFKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ A  + E  Q+DV+ AFL  D+ EE+Y+E P+G+  +P Q G+   L K++YGL  A   W +KF   ++  G K
Sbjct:  301 SSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 465          
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6LGV6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LGV6_9ASTR)

HSP 1 Score: 132 bits (332), Expect = 8.720e-33
Identity = 72/166 (43.37%), Postives = 104/166 (62.65%), Query Frame = 0
Query:    2 SSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELIAKGSK 164
            SSE PQW+ A+K E+D  +    W++VD P G   LG + IFKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ A  + E  Q+DV+ AFL  D+ EE+Y+E P+G+  +P Q G+   L K++YGL  A   W +KF   ++  G K
Sbjct:   80 SSEGPQWKEAIKNEIDSILQNRTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 244          
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6NLM6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NLM6_9ASTR)

HSP 1 Score: 133 bits (334), Expect = 9.400e-33
Identity = 72/166 (43.37%), Postives = 104/166 (62.65%), Query Frame = 0
Query:    2 SSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELIAKGSK 164
            SSE PQW+ A+K E+D  +    W++VD P G   LG + IFKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ A  + E  Q+DV+ AFL  D+ EE+Y+E P+G+  +P Q G+   L K++YGL  A   W +KF   ++  G K
Sbjct:  779 SSEGPQWKEAIKNEIDSILQNHTWEIVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 943          
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6P044_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P044_9ASTR)

HSP 1 Score: 131 bits (329), Expect = 1.480e-32
Identity = 71/166 (42.77%), Postives = 104/166 (62.65%), Query Frame = 0
Query:    2 SSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELIAKGSK 164
            SSE PQW+ A+K E+D  +    W++VD P G   LG + IFKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ A  + E  Q+DV+ +FL  D+ EE+Y+E P+G+  +P Q G+   L K++YGL  A   W +KF   ++  G K
Sbjct:   80 SSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTSFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 244          
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6MBP8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MBP8_9ASTR)

HSP 1 Score: 132 bits (331), Expect = 1.670e-32
Identity = 72/166 (43.37%), Postives = 104/166 (62.65%), Query Frame = 0
Query:    2 SSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELIAKGSK 164
            SSE PQW+ A+K E+D  +    W++VD P G   LG + IFKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ A  + E  Q+DV+ AFL  D+ EE+Y+E P+G+  +P Q G+   L K++YGL  A   W +KF   ++  G K
Sbjct:  145 SSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 309          
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A2N9GD92_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GD92_FAGSY)

HSP 1 Score: 131 bits (330), Expect = 3.280e-32
Identity = 68/165 (41.21%), Postives = 100/165 (60.61%), Query Frame = 0
Query:    1 MSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSP---NQVGRLQKAMYGLMHAGLLWSKKFGGELIAKG 162
            ++S  P W+ A+K E+D  +  G W +VD P GK+ +G K ++K K   DG V++YK R VAKGF Q  GI Y+E+ +P    SS+R  +AV A   W   Q+DV+ AFL  ++TEE+Y++LP G+   P   ++V RL++A+YGL  A   W  KF   +   G
Sbjct:  844 LASSDPLWQQAMKEELDALLKTGTWDLVDLPAGKSAIGCKWVYKIKTRSDGTVDRYKARLVAKGFTQEYGIDYEETFAPVARLSSVRTLIAVSASRHWPLFQMDVKNAFLNGELTEEVYMQLPPGFSQPPGFSHKVCRLRRALYGLKQAPRAWFAKFSSTISQHG 1008          
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A2N9J752_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J752_FAGSY)

HSP 1 Score: 131 bits (329), Expect = 4.420e-32
Identity = 68/165 (41.21%), Postives = 99/165 (60.00%), Query Frame = 0
Query:    1 MSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPN---QVGRLQKAMYGLMHAGLLWSKKFGGELIAKG 162
            ++S  P W+ A+K E+D  +  G W +VD P GK+ +G K ++K K   DG V++YK R VAKGF Q  GI Y+E+ +P    SS+R  +AV A   W   Q+DV+ AFL  ++TEE+Y++LP G+   P    +V RL++A+YGL  A   W  KF   +   G
Sbjct:  558 LASSDPLWQQAMKEELDALLKTGTWDLVDLPAGKSAIGCKWVYKIKTRSDGTVDRYKARLVAKGFTQEYGIDYEETFAPVARLSSVRTLIAVSASRHWPLFQMDVKNAFLNGELTEEVYMQLPPGFSQPPGFSPKVCRLRRALYGLKQAPRAWFAKFSSTISQHG 722          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N6P275_9ASTR1.420e-3343.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6PND6_9ASTR6.680e-3342.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5R9QKQ6_9BACT7.610e-3341.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6PKD3_9ASTR8.550e-3343.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6LGV6_9ASTR8.720e-3343.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6NLM6_9ASTR9.400e-3343.37Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A5N6P044_9ASTR1.480e-3242.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6MBP8_9ASTR1.670e-3243.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GD92_FAGSY3.280e-3241.21Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9J752_FAGSY4.420e-3241.21Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 24..155
e-value: 3.9E-35
score: 121.7
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 4..153
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 4..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig646contigF-serratus_M_contig646:2809..3342 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig646.17400.1mRNA_F-serratus_M_contig646.17400.1Fucus serratus malemRNAF-serratus_M_contig646 1865..3396 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig646.17400.1 ID=prot_F-serratus_M_contig646.17400.1|Name=mRNA_F-serratus_M_contig646.17400.1|organism=Fucus serratus male|type=polypeptide|length=178bp
MSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQD
GRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEG
RQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLW
SKKFGGELIAKGSKGPKPIPVCSGGSI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like