prot_F-serratus_M_contig6392.17293.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig6392.17293.1
Unique Nameprot_F-serratus_M_contig6392.17293.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length156
Homology
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 2.690e-55
Identity = 96/154 (62.34%), Postives = 118/154 (76.62%), Query Frame = 0
Query:    2 QAAGNGGVVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKRGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYV 155
            QA  N G++  DIEW+I+ +GA  NPPAT QLAAGK V++  +LHGQ++   +LP  LV LLED  LT TGVGI GDCTR+  F+GV+VAHAVDL  LA+ RK+ LGL+RGLADLC HLLG+ L KD  VRLS+WN+ DLS++QK YAALDAY 
Sbjct:  246 QAEANNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKRYAALDAYA 399          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: A0A6P5EXU7_ANACO (Werner Syndrome-like exonuclease n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EXU7_ANACO)

HSP 1 Score: 95.9 bits (237), Expect = 1.130e-21
Identity = 62/150 (41.33%), Postives = 81/150 (54.00%), Query Frame = 0
Query:    9 VVGFDIEWDIALS-GAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKR-GLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 156
            VVG D EW    S GA  NP A  QL  G+  LV  +LH    P      +L   L D    F GVG+ GD  R+    G+ VA AVDL  LA  R     LK+ GLA L + ++   + K  RVR+SRW+R+DL+ +Q  YA +DA++S
Sbjct:   53 VVGLDAEWRPNFSAGAAPNPVALVQLCVGRRCLVFSLLHADYVPL-----ALANFLADTRFAFVGVGVAGDAERLADECGLPVADAVDLRDLAAERTGRRQLKQMGLAGLAAEIMEVEVRKPSRVRMSRWDRRDLTLDQIGYACVDAFLS 197          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: A0A199VKE8_ANACO (Werner Syndrome-like exonuclease n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VKE8_ANACO)

HSP 1 Score: 95.9 bits (237), Expect = 2.220e-20
Identity = 62/150 (41.33%), Postives = 81/150 (54.00%), Query Frame = 0
Query:    9 VVGFDIEWDIALS-GAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKR-GLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 156
            VVG D EW    S GA  NP A  QL  G+  LV  +LH    P      +L   L D    F GVG+ GD  R+    G+ VA AVDL  LA  R     LK+ GLA L + ++   + K  RVR+SRW+R+DL+ +Q  YA +DA++S
Sbjct:  252 VVGLDAEWRPNFSAGAAPNPVALVQLCVGRRCLVFSLLHADYVPL-----ALANFLADTRFAFVGVGVAGDAERLADECGLPVADAVDLRDLAAERTGRRQLKQMGLAGLAAEIMEVEVRKPSRVRMSRWDRRDLTLDQIGYACVDAFLS 396          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: UPI001CC3C793 (Werner Syndrome-like exonuclease n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC3C793)

HSP 1 Score: 89.7 bits (221), Expect = 1.000e-18
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = 0
Query:    9 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKR-GLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 156
            VVG DIEW  + S + E+  A  QL      L+ Q+L+  + P+     SL+  L++ SLTF GVGI GD  ++ +   + V + VDL  LA  R     L+  GL +L   +LG+ + K  +V +SRW+ + L+ +Q  YA+LDA++S
Sbjct:  125 VVGLDIEWRPSFSRSVEHNVAVLQLCVEGNCLIFQLLYADQIPT-----SLINFLKNPSLTFVGVGIQGDVEKLLEDHELNVVNTVDLRSLAARRLSNPELRNSGLKELTREILGKEIGKPRKVTMSRWDAEWLTYDQVQYASLDAFLS 268          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: A0A3B3QYL5_9TELE (DNA helicase n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QYL5_9TELE)

HSP 1 Score: 90.1 bits (222), Expect = 4.930e-18
Identity = 61/150 (40.67%), Postives = 74/150 (49.33%), Query Frame = 0
Query:    7 GGVVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKRGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 156
            G  VGFD+EW  + +   +   A  QL        L  L          P  L  LLED ++   GVGI GD  R+   F +K+ + ++LT LA   KL    K  L  L  HL  R L KD  VR S WN  DL+EEQK YAA DAYVS
Sbjct:   33 GSAVGFDMEWPPSFTKGQKQKVALIQLCVSDHKCYLFHLSSM----LGFPAGLKMLLEDDTIKKVGVGIEGDMWRLLSDFDIKLKNFLELTDLA-NEKLRCAEKWSLDGLVKHLFNRQLKKDRDVRCSSWNDFDLTEEQKRYAATDAYVS 177          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: A0A3B3QY10_9TELE (DNA helicase n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QY10_9TELE)

HSP 1 Score: 90.1 bits (222), Expect = 4.930e-18
Identity = 61/150 (40.67%), Postives = 74/150 (49.33%), Query Frame = 0
Query:    7 GGVVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKRGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 156
            G  VGFD+EW  + +   +   A  QL        L  L          P  L  LLED ++   GVGI GD  R+   F +K+ + ++LT LA   KL    K  L  L  HL  R L KD  VR S WN  DL+EEQK YAA DAYVS
Sbjct:   63 GSAVGFDMEWPPSFTKGQKQKVALIQLCVSDHKCYLFHLSSM----LGFPAGLKMLLEDDTIKKVGVGIEGDMWRLLSDFDIKLKNFLELTDLA-NEKLRCAEKWSLDGLVKHLFNRQLKKDRDVRCSSWNDFDLTEEQKRYAATDAYVS 207          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: UPI00053FA13A (Werner Syndrome-like exonuclease n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FA13A)

HSP 1 Score: 85.9 bits (211), Expect = 6.530e-18
Identity = 57/151 (37.75%), Postives = 77/151 (50.99%), Query Frame = 0
Query:    9 VVGFDIEWDIALSGAH--ENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIR-KLPLGLKRGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 156
            VVG DIEW       H   NP +  QL  G   LV Q+ H     +  +P SL   L D   TF GVGI+ D  ++   + ++V++ VDL  LA IR   P     GL  L   +LG   +K   + +S W  + LSE QK YAA+DA++S
Sbjct:   42 VVGLDIEWLPNFYNRHPSRNPISVLQLCVGHHCLVFQLQH-----ACYIPQSLHNFLSDDDYTFVGVGIDDDVQKLYYDYDLEVSNTVDLRTLASIRYDQPTLGNTGLVKLAEMVLGLQYNKPRDITISNWTNRYLSETQKEYAAIDAFLS 187          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: UPI0019D5965F (Werner Syndrome-like exonuclease n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5965F)

HSP 1 Score: 84.7 bits (208), Expect = 7.890e-18
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 0
Query:    9 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKR-GLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 156
            V   D+EW  +  G  +NP AT QL   +  L+ Q+LH        L  +L G L D ++ F GVG++ D  R+    G++V  AVDL   A        L++ GL  + + +LG  L+K   V  SRW+ + LS+EQ TYA LDA+VS
Sbjct:    2 VARLDVEWRPSYRG-KQNPVATLQLCVDRRCLIFQLLHADY-----LHAALPGFLGDRAVRFFGVGVDADAARLRADHGLEVGRAVDLRGYAEEYAGRPDLRQAGLRAIAAAVLGVDLAKPHGVTTSRWDARSLSDEQITYACLDAFVS 144          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: A0A0E0IQK6_ORYNI (3'-5' exonuclease domain-containing protein n=8 Tax=Oryza TaxID=4527 RepID=A0A0E0IQK6_ORYNI)

HSP 1 Score: 85.9 bits (211), Expect = 8.370e-18
Identity = 58/156 (37.18%), Postives = 80/156 (51.28%), Query Frame = 0
Query:    2 QAAGNGGVVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKR-GLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 156
            ++ G+  VVG D+EW  A       P A  QL   +  LV QILH        LP +L   L D   TF GVG+  D  R+   +G++V  AVDL  LA        L+R GL  L   ++G  + K   VR+S W++++LSE+Q  YA  DA+ S
Sbjct:   48 RSCGHPLVVGLDVEWRPAAP--VPGPVAVLQLCVDRRCLVFQILHADY-----LPDALSRFLADPRYTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFAS 196          
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Match: B9FDW5_ORYSJ (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9FDW5_ORYSJ)

HSP 1 Score: 84.7 bits (208), Expect = 8.670e-18
Identity = 56/149 (37.58%), Postives = 75/149 (50.34%), Query Frame = 0
Query:    9 VVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKTPSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLALIRKLPLGLKR-GLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAALDAYVS 156
            VVG D+EW  A       P A  QL   +  LV QILH    P      +L   L D   TF GVG+  D  R+   +G++V  AVDL  LA        L+R GL  L   ++G  + K   VR+S W++++LSE+Q  YA  DA+ S
Sbjct:   10 VVGLDVEWRPAAP--VPGPVAVLQLCVDRRCLVFQILHADYVPD-----ALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFAS 151          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6392.17293.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE2.690e-5562.343'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6P5EXU7_ANACO1.130e-2141.33Werner Syndrome-like exonuclease n=1 Tax=Ananas co... [more]
A0A199VKE8_ANACO2.220e-2041.33Werner Syndrome-like exonuclease n=1 Tax=Ananas co... [more]
UPI001CC3C7931.000e-1836.91Werner Syndrome-like exonuclease n=1 Tax=Telopea s... [more]
A0A3B3QYL5_9TELE4.930e-1840.67DNA helicase n=2 Tax=Paramormyrops kingsleyae TaxI... [more]
A0A3B3QY10_9TELE4.930e-1840.67DNA helicase n=1 Tax=Paramormyrops kingsleyae TaxI... [more]
UPI00053FA13A6.530e-1837.75Werner Syndrome-like exonuclease n=1 Tax=Beta vulg... [more]
UPI0019D5965F7.890e-1837.58Werner Syndrome-like exonuclease n=1 Tax=Panicum v... [more]
A0A0E0IQK6_ORYNI8.370e-1837.183'-5' exonuclease domain-containing protein n=8 Ta... [more]
B9FDW5_ORYSJ8.670e-1837.583'-5' exonuclease domain-containing protein n=1 Ta... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..156
e-value: 5.0E-39
score: 135.5
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 5..155
e-value: 2.1E-11
score: 43.9
NoneNo IPR availablePANTHERPTHR13620:SF65coord: 8..156
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 8..156
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 6..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6392contigF-serratus_M_contig6392:28209..28957 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6392.17293.1mRNA_F-serratus_M_contig6392.17293.1Fucus serratus malemRNAF-serratus_M_contig6392 28209..28957 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig6392.17293.1 ID=prot_F-serratus_M_contig6392.17293.1|Name=mRNA_F-serratus_M_contig6392.17293.1|organism=Fucus serratus male|type=polypeptide|length=156bp
TQAAGNGGVVGFDIEWDIALSGAHENPPATFQLAAGKFVLVLQILHGQKT
PSTKLPGSLVGLLEDASLTFTGVGINGDCTRIEKFFGVKVAHAVDLTKLA
LIRKLPLGLKRGLADLCSHLLGRSLSKDGRVRLSRWNRKDLSEEQKTYAA
LDAYVS
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR0025623'-5'_exonuclease_dom
IPR012337RNaseH-like_sf