prot_F-serratus_M_contig636.17262.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig636.17262.1
Unique Nameprot_F-serratus_M_contig636.17262.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length1207
Homology
BLAST of mRNA_F-serratus_M_contig636.17262.1 vs. uniprot
Match: D8LSS5_ECTSI (Neural cell expressed, developmentally down-regulated 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS5_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 2.980e-66
Identity = 143/304 (47.04%), Postives = 187/304 (61.51%), Query Frame = 0
Query:    3 MDSLVSCSDVVKIWDTGGWKLGQSTTMTMQNAVTNSCC---WVSNGQAVVTAGSSGFITVVKPSGIIVPTKMSSAHDLPINAVAVSPGARKVATAGDAGEIEIWSTKSKGKMKVDTLKQGSPVTCVSFLDSESHLAAGDSDGRVLLHRLKDAADDNAPESPSPVSLPPVGAHSGVLDLSVRSAA--PTMVGVAHSDGAVRLWETGRGGNCIQEIKGQHRGAATGIDFSPNGHNLFATVGADGRVRYMDIRVGEKSGR-----VLRSIETRVPLTCLSFHNEGHVLSVGASDGTIRLIDLRTASQ 296
            M SL +CSDV+++WDTG                        W  NGQ V TAG +G ITV+K SG IVP  + SAH+  I  +  S  +RK+A  GDAG +E+W  K +   +V       PVTCVSF D +S +AAGD  G+V+LHR+ DA  D+   +    +LPP G +S V  LS+ SAA  P M+GV+++DG VRLW+TG    C++E++ QHRGAA GI F P   NL AT G DG VR  D+RVGE+        VL+SI+T  PLTC+SFH+EG  L+ GASDGT+RL+DLRTA +
Sbjct:    1 MSSLATCSDVIRLWDTGXXXXXXXXXXXXXXXXXXXXXXXXWNHNGQVVATAGDNGSITVLKLSGSIVPAGVLSAHEKAIRGITFSSKSRKLAAGGDAGVVEVWDLK-RNNSRVTMRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASA----TLPPAGGYSSVTGLSMASAAAGPAMLGVSYADGTVRLWDTGSRA-CVREMQTQHRGAAAGIVFHPQNPNLVATAGHDGVVRCTDVRVGERKDGGGGDGVLKSIQTDAPLTCVSFHHEGLALAAGASDGTVRLVDLRTARE 298          
BLAST of mRNA_F-serratus_M_contig636.17262.1 vs. uniprot
Match: D2V7A1_NAEGR (WD40 repeat domain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V7A1_NAEGR)

HSP 1 Score: 90.1 bits (222), Expect = 1.300e-14
Identity = 62/275 (22.55%), Postives = 125/275 (45.45%), Query Frame = 0
Query:   22 KLGQSTTMTMQNAVTNSCCWVSNGQAVVTAGSSGFITVVKPSGIIVPTKMSSAHDLPINAVAVSPGARKVATAGDAGEIEIWSTKSKGKMKVDTLKQGSPV-TCVSFLDSESHLAAGDSDGRVLLHRLKDAADDNAPESPSPVSLPPVGAHSGVLDLSVRSAAPTMVGVAHSDGAVRLWETGRGGNCIQEIKGQHRGAATGIDFSPNGHNLFATVGADGRVRYMDIRVGEKSGRVLRSIETRVPLTCLSFHNEGHVLSVGASDGTIRLIDLRTAS 295
            KL    ++   N   N   W  N + +++    G + +  P G I   K++      + ++++   + K+ + G +  ++IW  K K    ++T K    + TCV+F + + H+A+GD+ G +L+H +            + +S         +  L       T++  A  DG+V +W+T   G        QH+     + FS     L A+ G D  + + DI    K  +++ +I    P++  S+ + G +++VG S+G++ L DL+ ++
Sbjct:   67 KLSPYNSLNFPNRTINDTKWNHNNKVLISCSDDGSVIMGTPEGEIF-GKLNIEEQ--VQSISIGESSLKLCSGGSSCIVKIWDLKKKEV--INTFKGHKEIITCVTFSEGDQHVASGDASGTILIHNIVS----------NTLSCTLSNTQQSIKFLEYSPFYKTLLASASDDGSVTIWDT-ISGKPYCSFPNQHQAPCVAVHFSKQNVALLASAGLDKNIYFYDI----KEKKIVENIRVSQPISSFSYLDNGSIMAVGTSNGSVFLYDLKKST 321          
BLAST of mRNA_F-serratus_M_contig636.17262.1 vs. uniprot
Match: I0YIR8_COCSC (WD40 repeat-like protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YIR8_COCSC)

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-9
Identity = 67/266 (25.19%), Postives = 123/266 (46.24%), Query Frame = 0
Query:   37 NSCCWVSNGQAVVTAGSSGFITVVKPSGIIVPTKMSSAHDLP----INAVAVSPGARKVATAGDAGEIEIWSTKSKGKMKVDTLKQGSPVTCVSFLDSESHLAAGDSDGRVLLHR---LKDAADDNAPESP-SPVSLPPVGAHSGVLDLSVRSAAPTMVGVAHSDGAVRLWETGRGGNCIQEIKGQHRGAATGIDFSPNGHNLFATVGADGRVRYMDIRVGEKSG--RVLRSIETRVPLTCLSFHNEGHVLSVGASDGTIRLIDLR 292
            N   W +NG+A+  +GS+G ++V +P+G  + +  S   +      ++ ++ S G++ +A     G + +WS   + ++ +  +     VT +SF      LA+    G++LLH    +K A   +   +P + ++  P+     +L  S R+ A  +    H+   +R  E         E    H+G A  + F     NL  + GADG +  +D R+G  +   R  RS+ T      L  H++GH ++VG + G + L D R
Sbjct:   43 NGVAWNANGKAIAASGSTGHVSVYRPTGESIGSLPSPGDETSLMGEVSCLSFSRGSKLLAAGCLDGLVHVWSLNQQERV-LRLIDHVDAVTSISFSPDGRTLASSSVSGQLLLHNTEGIKKARLQSRNLAPITCITYAPLSFEKQLLACSTRTGAVEV----HALNELRPGE---------EHPNLHKGPAAAVRFVDGMGNLLISAGADGSLVLIDRRLGGMAACARTGRSLST------LDMHHDGHSIAVGTTGGGVLLYDAR 288          
BLAST of mRNA_F-serratus_M_contig636.17262.1 vs. uniprot
Match: UPI001989FE28 (Uncharacterized protein n=2 Tax=Kitasatospora xanthocidica TaxID=83382 RepID=UPI001989FE28)

HSP 1 Score: 59.7 bits (143), Expect = 3.460e-5
Identity = 69/221 (31.22%), Postives = 97/221 (43.89%), Query Frame = 0
Query:   79 INAVAVSPGARKVATAGDAGEIEIWSTKSKGKMKVDTLKQGSPVTCVSFLDSESHLAAG---DSDGRVLLHRLKDAADDNAPESPSPVSLPP--VGAHSGVLDLSV-RSAAPTMVGVAHSD--GAVRLWETGRGGNCIQEIKGQHRGAATGIDFSPNGHNLFATVGADGRVRYMDIRVGEKS---GRVLRSIETRVPLTCLSFHNEGHVLSVGASDGTIRL 288
            +NA+A+SP  R VAT    G + +W T +   +     + G PV  V F      LAA    D   RVLL R+ D         PSPV +PP   GA +    L+  R  A    G + +D  G V +W T  G          H G   G+ F   GH + A+   DG V   D+    ++     V+ S  +  P + L+F  +G +L+VG   G IRL
Sbjct:   31 VNALALSPDGRLVATGDSRGRVALWDTATTALVAELQGEVGHPVQDVEFSPDGRLLAAALTRDPQRRVLLWRVADRQ-----RLPSPV-MPPSATGASTVAKRLAFSRDGALLAAGTSDADLPGRVWVWRTDAGAAPPVRTLVDHAGVIQGLGFGA-GHRI-ASAATDGTVLVRDLDAPARADGGAPVVFSGRSPSPRS-LAFAADGGLLAVGDEQGGIRL 242          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig636.17262.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSS5_ECTSI2.980e-6647.04Neural cell expressed, developmentally down-regula... [more]
D2V7A1_NAEGR1.300e-1422.55WD40 repeat domain-containing protein n=1 Tax=Naeg... [more]
I0YIR8_COCSC1.100e-925.19WD40 repeat-like protein n=1 Tax=Coccomyxa subelli... [more]
UPI001989FE283.460e-531.22Uncharacterized protein n=2 Tax=Kitasatospora xant... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1178..1198
NoneNo IPR availablePANTHERPTHR44414FAMILY NOT NAMEDcoord: 5..297
coord: 990..1205
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 65..104
e-value: 0.034
score: 23.3
coord: 204..245
e-value: 9.9E-5
score: 31.7
coord: 22..61
e-value: 15.0
score: 9.6
coord: 252..290
e-value: 0.0015
score: 27.8
coord: 109..147
e-value: 0.097
score: 21.8
coord: 159..200
e-value: 12.0
score: 10.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 265..290
e-value: 0.071
score: 14.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 72..113
score: 10.074
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 265..299
score: 8.57
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 168..342
e-value: 2.7E-25
score: 91.2
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 4..167
e-value: 2.3E-17
score: 64.6
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 72..299
score: 20.408
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 38..323

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig636contigF-serratus_M_contig636:218453..229469 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig636.17262.1mRNA_F-serratus_M_contig636.17262.1Fucus serratus malemRNAF-serratus_M_contig636 218094..230742 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig636.17262.1 ID=prot_F-serratus_M_contig636.17262.1|Name=mRNA_F-serratus_M_contig636.17262.1|organism=Fucus serratus male|type=polypeptide|length=1207bp
MAMDSLVSCSDVVKIWDTGGWKLGQSTTMTMQNAVTNSCCWVSNGQAVVT
AGSSGFITVVKPSGIIVPTKMSSAHDLPINAVAVSPGARKVATAGDAGEI
EIWSTKSKGKMKVDTLKQGSPVTCVSFLDSESHLAAGDSDGRVLLHRLKD
AADDNAPESPSPVSLPPVGAHSGVLDLSVRSAAPTMVGVAHSDGAVRLWE
TGRGGNCIQEIKGQHRGAATGIDFSPNGHNLFATVGADGRVRYMDIRVGE
KSGRVLRSIETRVPLTCLSFHNEGHVLSVGASDGTIRLIDLRTASQVGTP
KVAYAGPSPPPGGVREVAFQRPSPCIGIGISSSSSSCSSNGATSPGGLGV
TESWVSSSGNRTARSGVRPDWEPEVVRGGTDVAPAARLGRSKPRPGDGVD
EGKREPSGYSDDAANAPSMVEAQPRRRRLSGKGLRADSALLPPAPSGGLV
GSSNRPSASRRAGRSNSHDPVAAGIGQRGKAVASTTARHSSEQQRTVREE
GVSKDVRRRRRETLALEEGGTRSQRAGRRESAVGRSANTPPERRPLPSPK
HHVVPEHAYKTDQRGQKGGDFSDDRDIVADKGGRGSHSRPSLQSSTSGRN
VHGREGHQPPPDHRPSEPASASLHVEPSPHSRRPLQQQPSNGHESATLST
FEEGQSARVGINRGGGHRHAHPDGLGLSRSSLRSSNSGRNKDSSPSPPHR
GRPEADVPSSTPLSIQREPSSPPSRRRPQQQRNDGHDSAETGIDQGGRDH
ASHHDGLNLSRSALRSERQQQPYPPDRRRSEVDGSLPTSASFQAELSPHY
RRRRQQEKRSNGHGSATLSTLQEGQGAKIGNDPGGHHHEPYRDTGNLSRP
SVRSSTSGKNNQPPSPSNRWQSDATGPLPTSPSLHAERSFPPDRRQQQQQ
QHQQPNKYTSVKVTMPQVGQIAGAGVDRSDRRDEAQPDDLSLSRPSLYSP
QIYGGNGQLPPSPPGRRRSEANCSLQMPPSLDVEPSSRCLRKQELEQQAN
HDYESVLLSPPHVGHSAKAVVDRGLDDSFFPLNDDEGCGASGGGDGAKRL
TSPDHSHANKLGLSPAFAPSSRAPRSTSRGQAGDEADVKAKSSAASTREV
GGTDTRLSGLDRAMLEQMLSSQRAMMDQVLSSQRTMMEEVFSSQISILRK
ELRQEFRNVHVDMLRQFQSHQDEQALAMASIEERLGCLIAENMALRAENT
KLRNVF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf