prot_F-serratus_M_contig626.17099.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig626.17099.1
Unique Name	prot_F-serratus_M_contig626.17099.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	105

Homology

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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: Q2PQH1_FUCVE (Photosystem I assembly protein Ycf4 n=3 Tax=Fucaceae TaxID=3010 RepID=Q2PQH1_FUCVE)

HSP 1 Score: 186 bits (473), Expect = 2.000e-58
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0

Query:    1 NNILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 96
            NNILFFI+SKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKN KILLVYQFKNLKSIKLTIQDGINPKRI
Sbjct:   48 NNILFFIDSKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNRKILLVYQFKNLKSIKLTIQDGINPKRI 143

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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A344PFE2_9PHAE (Photosystem I assembly protein Ycf4 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFE2_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.650e-49
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 0

Query:    2 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 96
            N LFFI S +L FLPQGLIMTFYGV+AISLS+YISLT+FWDVGSGYNEFDK+N+L+RIVR GFPGKN +ILLVY FKN+KSIKL IQDGINPKRI
Sbjct:   45 NFLFFINSNDLAFLPQGLIMTFYGVVAISLSIYISLTVFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRI 139

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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A6G6D7G8_ECTSI (Photosystem I assembly protein Ycf4 n=32 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7G8_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 4.700e-49
Identity = 77/95 (81.05%), Postives = 87/95 (91.58%), Query Frame = 0

Query:    2 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 96
            N+LFFI S EL+FLPQGL+MTFYGV+ ISLS+YI LTIFWDVGSGYNEFDK+N+L+RIVR GFPGKN +ILLVY FKN+KSIKL IQDGINPKRI
Sbjct:   45 NLLFFINSTELSFLPQGLVMTFYGVVGISLSIYIGLTIFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRI 139

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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A1L2F1V9_9PHAE (Photosystem I assembly protein Ycf4 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1V9_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.070e-48
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 0

Query:    2 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 96
            N+L FI S++L+FLPQG+IMTFYGVIAI LS YI LTIFWDVGSGYNEFDKEN+LVRIVR GFPGKN KILLVYQF+NLKSIKL IQDG+NPKRI
Sbjct:   49 NLLGFINSEQLSFLPQGVIMTFYGVIAIGLSFYIGLTIFWDVGSGYNEFDKENELVRIVRRGFPGKNRKILLVYQFRNLKSIKLNIQDGLNPKRI 143

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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A8F0F7W7_AKKLU (Photosystem I assembly protein Ycf4 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F7W7_AKKLU)

HSP 1 Score: 161 bits (407), Expect = 2.150e-48
Identity = 75/95 (78.95%), Postives = 88/95 (92.63%), Query Frame = 0

Query:    2 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 96
            N+LFFI S EL+FLPQGL+MTFYGV+AISLS+YI+LTIFWD+GSGYNEFDK ++L+RIVR GFPGKN +ILLVY FKN+KSIKL IQDGINPKR+
Sbjct:   49 NLLFFINSTELSFLPQGLVMTFYGVVAISLSIYIALTIFWDIGSGYNEFDKRDELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRV 143

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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A6B7IL95_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7IL95_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 7.440e-48
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 0

Query:    2 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 96
            N++FFI S EL FLPQGL+MTFYGV+AISLSLYI LTIFWDVGSGYNEFDK+N+L+RIVR GFPGKN +ILLVY FKN+KSIKL IQDGINPKRI
Sbjct:  180 NLIFFINSMELAFLPQGLVMTFYGVVAISLSLYIGLTIFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRI 274

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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A8F0F7K4_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7K4_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.600e-45
Identity = 73/95 (76.84%), Postives = 84/95 (88.42%), Query Frame = 0

Query:    2 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 96
            N L FI S EL+FLPQGL+MTFYGV+A+SLS+YI LTIFWD+GSGYNEFDK+ +LVRIVR GFPGKN +ILLVY F N+KSIKL IQDGINPKR+
Sbjct:   48 NFLPFINSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQTELVRIVRKGFPGKNRQILLVYSFNNIKSIKLNIQDGINPKRV 142

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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A2I4Q2G9_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2G9_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 7.950e-44
Identity = 71/95 (74.74%), Postives = 84/95 (88.42%), Query Frame = 0

Query:    2 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 96
            N L F+ + +L+FLPQGLIMTFYG+I +SLSL+ISLTIFWDVGSGYNEF+K+ +L+RIVR GFPGKN KILLVY F N+KSIKL IQ+GINPKRI
Sbjct:   50 NFLPFVNTADLSFLPQGLIMTFYGIIGLSLSLFISLTIFWDVGSGYNEFNKQTELIRIVRRGFPGKNRKILLVYPFNNIKSIKLNIQEGINPKRI 144

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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: A0A8E6D5U2_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5U2_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 6.470e-43
Identity = 71/95 (74.74%), Postives = 82/95 (86.32%), Query Frame = 0

Query:    2 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 96
            N L F  S EL F+PQGL+MTFYGV+AISLS+YI+LTI WDVG GYNEFDK+ +L+RIVR GFPGKN +ILLVY F+N+KSIKL IQDGINPKRI
Sbjct:   50 NFLPFGNSIELNFVPQGLVMTFYGVVAISLSIYIALTILWDVGGGYNEFDKDKELIRIVRRGFPGKNRQILLVYSFQNIKSIKLNIQDGINPKRI 144

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BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Match: B7T212_VAULI (Photosystem I assembly protein Ycf4 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T212_VAULI)

HSP 1 Score: 146 bits (368), Expect = 1.740e-42
Identity = 68/95 (71.58%), Postives = 83/95 (87.37%), Query Frame = 0

Query:    2 NILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRI 96
            N+L+F    EL F+PQG++MTFYGV+AISLS YI+LTI WDVG+GYNEF+K ++LVRI+R GFPGKN +ILLVY F N+KSIKLTIQDGINPKR+
Sbjct:   48 NLLYFANPTELIFIPQGIVMTFYGVVAISLSFYITLTIIWDVGAGYNEFNKVDELVRIMRKGFPGKNRQILLVYPFNNIKSIKLTIQDGINPKRL 142

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig626.17099.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Q2PQH1_FUCVE	2.000e-58	97.92	Photosystem I assembly protein Ycf4 n=3 Tax=Fucace...	[more]
A0A344PFE2_9PHAE	1.650e-49	82.11	Photosystem I assembly protein Ycf4 n=4 Tax=Scytos...	[more]
A0A6G6D7G8_ECTSI	4.700e-49	81.05	Photosystem I assembly protein Ycf4 n=32 Tax=Phaeo...	[more]
A0A1L2F1V9_9PHAE	1.070e-48	83.16	Photosystem I assembly protein Ycf4 n=13 Tax=Sarga...	[more]
A0A8F0F7W7_AKKLU	2.150e-48	78.95	Photosystem I assembly protein Ycf4 n=1 Tax=Akkesi...	[more]
A0A6B7IL95_9PHAE	7.440e-48	82.11	Photosystem I assembly protein Ycf4 n=1 Tax=Clados...	[more]
A0A8F0F7K4_9PHAE	1.600e-45	76.84	Photosystem I assembly protein Ycf4 n=1 Tax=Protoh...	[more]
A0A2I4Q2G9_9PHAE	7.950e-44	74.74	Photosystem I assembly protein Ycf4 n=1 Tax=Dictyo...	[more]
A0A8E6D5U2_9PHAE	6.470e-43	74.74	Photosystem I assembly protein Ycf4 n=1 Tax=Ishige...	[more]
B7T212_VAULI	1.740e-42	71.58	Photosystem I assembly protein Ycf4 n=1 Tax=Vauche...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003359	Photosystem I Ycf4, assembly	PFAM	PF02392	Ycf4	coord: 2..97 e-value: 1.2E-38 score: 132.5
None	No IPR available	PANTHER	PTHR33288	FAMILY NOT NAMED	coord: 2..96
None	No IPR available	PANTHER	PTHR33288:SF4	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF4	coord: 2..96
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 42..104
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..41
None	No IPR available	PRODOM	PD003698		coord: 2..95 e-value: 3.0E-27 score: 297.0
None	No IPR available	TMHMM	TMhelix		coord: 15..37

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig626	contig	F-serratus_M_contig626:217284..217598 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig626.17099.1	mRNA_F-serratus_M_contig626.17099.1	Fucus serratus male	mRNA	F-serratus_M_contig626 217284..217598 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig626.17099.1 ID=prot_F-serratus_M_contig626.17099.1|Name=mRNA_F-serratus_M_contig626.17099.1|organism=Fucus serratus male|type=polypeptide|length=105bp
NNILFFIESKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEF
DKENQLVRIVRLGFPGKNWKILLVYQFKNLKSIKLTIQDGINPKRITSST
SINI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003359	PSI_Ycf4_assembly