prot_F-serratus_M_contig621.17042.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig621.17042.1
Unique Name	prot_F-serratus_M_contig621.17042.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	179

Homology

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BLAST of mRNA_F-serratus_M_contig621.17042.1 vs. uniprot
Match: D7G9E7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E7_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 4.600e-65
Identity = 105/163 (64.42%), Postives = 133/163 (81.60%), Query Frame = 0

Query:    5 SSRHLPSVTAVSIGPLVLVVSVCFVLEVLIGLVLWRVSRVARAEANMLSQRQTLKAGISKTDYSSTFVENAKLRRLLLKVEKGIEKEKSAKEKRRKSTTKVVRAIRVGVYGIMVVLTWGHPLISLTPDYLWPSCFSHALSGGRVPGNVGALSIVAMFMFGLTP 167
            +S HLPSV AVS+  L LVV +C ++EV+ G V+W+ SRV R EA ++SQRQTL+ G++KT+Y++TFVEN+KL+RLLLK EK +E+ +SA+++R KS  K VRA+RV VYG MVVL WG PLIS +PDYLWPS FSHALSGGR  G+VGALSIVAMF+FGL P
Sbjct:    7 ASPHLPSVMAVSVDTLFLVVMMCSLVEVVAGFVMWKTSRVTRTEAALISQRQTLRTGVAKTNYTATFVENSKLKRLLLKAEKDLERIQSARDRRLKSVAKAVRAVRVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGSVGALSIVAMFLFGLVP 169

[Close]

BLAST of mRNA_F-serratus_M_contig621.17042.1 vs. uniprot
Match: A0A835YKR9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKR9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 9.720e-18
Identity = 58/169 (34.32%), Postives = 88/169 (52.07%), Query Frame = 0

Query:    6 SRHLPSVTAVSIGPLVLVVSVCFVLEVLIGLVLWRVSRVARAEANMLSQRQTLKAGISKTDYSSTFVENAKLRRLLLKVEKGIEKEKSAKEKRRKSTTKVVRAIRVGVYGIMVVLTWGHPLISLTPDYLWPSCFSHALSGGRVPGN----VGALSIVAMFMFGLTPLFG 170
            S  LP+V A++   L+L + VC ++E++ G+      R  +AE         LK  I KT+Y   FVEN+KL+R L+KVEK +E+ +  +  RR    +  R +R+  YG +V   WG   I  TP Y+ P     A++GG + G     V    +V +F +GL   FG
Sbjct:    4 SAALPAVLAINPVGLILAILVCVIVELISGIAHAMAGRRTQAEVTYSEDVALLKVEIVKTNYPEKFVENSKLQRQLIKVEKELERLRGERAARRTKVQRWTRWLRLAAYGALVAAHWGQTAIRFTPAYVTPL---GAVAGGPLQGTPQGGVSIAGVVVLFWWGLGGRFG 169

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig621.17042.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig621.17042.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G9E7_ECTSI	4.600e-65	64.42	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YKR9_9STRA	9.720e-18	34.32	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028945	WRB/Get1 family	PFAM	PF04420	CHD5	coord: 42..157 e-value: 2.5E-7 score: 30.7
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 152..173
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 174..178
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 42..104
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 128..151
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 105..127
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..41
None	No IPR available	TMHMM	TMhelix		coord: 108..130
None	No IPR available	TMHMM	TMhelix		coord: 150..172
None	No IPR available	TMHMM	TMhelix		coord: 15..37

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig621	contig	F-serratus_M_contig621:259266..264546 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig621.17042.1	mRNA_F-serratus_M_contig621.17042.1	Fucus serratus male	mRNA	F-serratus_M_contig621 258757..270446 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig621.17042.1 ID=prot_F-serratus_M_contig621.17042.1|Name=mRNA_F-serratus_M_contig621.17042.1|organism=Fucus serratus male|type=polypeptide|length=179bp
MSTMSSRHLPSVTAVSIGPLVLVVSVCFVLEVLIGLVLWRVSRVARAEAN
MLSQRQTLKAGISKTDYSSTFVENAKLRRLLLKVEKGIEKEKSAKEKRRK
STTKVVRAIRVGVYGIMVVLTWGHPLISLTPDYLWPSCFSHALSGGRVPG
NVGALSIVAMFMFGLTPLFGLVIDCVPI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR028945	WRB/Get1