prot_F-serratus_M_contig62.17026.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig62.17026.1
Unique Name	prot_F-serratus_M_contig62.17026.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	87

Homology

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BLAST of mRNA_F-serratus_M_contig62.17026.1 vs. uniprot
Match: D7FX37_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX37_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.150e-9
Identity = 38/90 (42.22%), Postives = 59/90 (65.56%), Query Frame = 0

Query:    1 GGHVSGVPPGIGKVVAPEVPPPLKDLNRRANLV------DDKPPEEIADELMIGEIKNVSMKEELILLRKALMIIVLSVTIAVVVRRYIG 84
            GG  +  PP    V  P+ PPPL+ + RR +LV      +D+P E I  ELMIGEI+++ + EE+ L+R+A+++I+LS+  AV+VR + G
Sbjct:  275 GGAGASRPPPQDDVNYPDTPPPLRRMQRRGSLVNREVPQEDEPKEPIEPELMIGEIQSIRLHEEIALVRRAIVLIMLSLVAAVLVRAFAG 364

[Close]

BLAST of mRNA_F-serratus_M_contig62.17026.1 vs. uniprot
Match: A0A6H5JDS1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS1_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.150e-9
Identity = 37/85 (43.53%), Postives = 59/85 (69.41%), Query Frame = 0

Query:    8 PPGIGKVVAPEVPPPLKDLNRRANLVD-DKPPEE-----IADELMIGEIKNVSMKEELILLRKALMIIVLSVTIAVVVRRYIGPM 86
            PP  G V  P+ PPPL+ + RR +LV+ + PPE+     I  ELMIGEI+++ + EE+ L+R+A+++I+LS+  AV+VR + G +
Sbjct:  283 PPPQGDVNYPDTPPPLRRMQRRGSLVNREVPPEDDLKEPIEPELMIGEIQSIRLHEEIALVRRAIVLIMLSLVAAVLVREFAGEL 367

[Close]

BLAST of mRNA_F-serratus_M_contig62.17026.1 vs. uniprot
Match: D7FX36_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX36_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 1.830e-5
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 0

Query:    2 GHVSG---VPPGIGKVVAPEVPPPLKDLNRRANLV---DDKPPEEIAD-----ELMIGEIKNVSMKEELILLRKALMIIVLSVTIAVVVRRYIGP 85
            GHVSG   +P  +  V  P  PP L     R NLV   D K  EE  D     ELMIGEIK++ + +E++L RKAL++I +S+  A + R + GP
Sbjct:  223 GHVSGRMSLPNALDGVRIPATPPQLNATENRPNLVHVHDTK--EERMDTRSETELMIGEIKSIQITDEIVLARKALVLIFVSLVGATLFREFAGP 315

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig62.17026.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig62.17026.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7FX37_ECTSI	1.150e-9	42.22	Small Conductance Mechanosensitive Ion channel n=1...	[more]
A0A6H5JDS1_9PHAE	2.150e-9	43.53	EF-hand domain-containing protein n=1 Tax=Ectocarp...	[more]
D7FX36_ECTSI	1.830e-5	42.11	Small Conductance Mechanosensitive Ion channel n=1...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 65..83
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 84..86
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..64
None	No IPR available	TMHMM	TMhelix		coord: 65..84

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig62	contig	F-serratus_M_contig62:902334..902955 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig62.17026.1	mRNA_F-serratus_M_contig62.17026.1	Fucus serratus male	mRNA	F-serratus_M_contig62 902334..902955 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig62.17026.1 ID=prot_F-serratus_M_contig62.17026.1|Name=mRNA_F-serratus_M_contig62.17026.1|organism=Fucus serratus male|type=polypeptide|length=87bp
GGHVSGVPPGIGKVVAPEVPPPLKDLNRRANLVDDKPPEEIADELMIGEI
KNVSMKEELILLRKALMIIVLSVTIAVVVRRYIGPM*