prot_F-serratus_M_contig1494.3399.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig1494.3399.1
Unique Name	prot_F-serratus_M_contig1494.3399.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	122

Homology

[Close]

BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: D7FUM9_ECTSI (Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM9_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 4.210e-76
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0

Query:    2 SQDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 121
            S+DYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGV+LLALYKDKKEKPRS
Sbjct:   87 SKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206

[Close]

BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: A0A835Z8V8_9STRA (Putative ribosomal protein S23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V8_9STRA)

HSP 1 Score: 226 bits (576), Expect = 2.170e-74
Identity = 113/120 (94.17%), Postives = 119/120 (99.17%), Query Frame = 0

Query:    2 SQDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 121
            S+DYNK+HSVTAMKANPLGG+SMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+TDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVS+LALYK KKEKPRS
Sbjct:   26 SKDYNKAHSVTAMKANPLGGASMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSILALYKGKKEKPRS 145

[Close]

BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: A0A4W5LQ08_9TELE (40S ribosomal protein S23 n=31 Tax=Eukaryota TaxID=2759 RepID=A0A4W5LQ08_9TELE)

HSP 1 Score: 223 bits (569), Expect = 5.420e-73
Identity = 111/119 (93.28%), Postives = 116/119 (97.48%), Query Frame = 0

Query:    3 QDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 121
            + YNKSHS+TAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKK+AAFVPRDGCLN+ DENDEVLI+GFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS
Sbjct:   50 KSYNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 168

[Close]

BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: M4BPE8_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BPE8_HYAAE)

HSP 1 Score: 217 bits (552), Expect = 9.870e-71
Identity = 110/119 (92.44%), Postives = 114/119 (95.80%), Query Frame = 0

Query:    3 QDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 121
            + YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK  RVQLIKN KK+AAFVPRDGCLNF DENDEVLISGFGRRGHAVGDIPGVRFKVVKV+GVSLLALYK+KKEKPRS
Sbjct:   27 KSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNFVDENDEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145

[Close]

BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: A0A7R9WFA5_9STRA (Hypothetical protein n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7R9WFA5_9STRA)

HSP 1 Score: 215 bits (548), Expect = 3.760e-70
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 0

Query:    3 QDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 121
            Q Y K+HS+TAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVLISGFGR GHAVGDIPGVRFKV KVAGVSLLALYK+KKEKPRS
Sbjct:   25 QKYCKAHSITAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLISGFGRSGHAVGDIPGVRFKVAKVAGVSLLALYKEKKEKPRS 143

[Close]

BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: B8C1Z7_THAPS (RS23, ribosomal protein 23 40S small ribosomal subunit n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8C1Z7_THAPS)

HSP 1 Score: 213 bits (543), Expect = 2.170e-69
Identity = 105/117 (89.74%), Postives = 113/117 (96.58%), Query Frame = 0

Query:    5 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 121
            Y K+HSVTAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVL++GFGR GHAVGDIPGVRFK VKVAGVSLLALYK+KKEKPRS
Sbjct:   27 YTKAHSVTAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143

[Close]

BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: W7TKK2_9STRA (40s ribosomal protein s23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKK2_9STRA)

HSP 1 Score: 212 bits (540), Expect = 6.650e-69
Identity = 105/120 (87.50%), Postives = 115/120 (95.83%), Query Frame = 0

Query:    2 SQDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 121
            S+ +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNF DENDEVLI+GFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS
Sbjct:   26 SKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145

[Close]

BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: A0A6U0RBQ4_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A6U0RBQ4_9STRA)

HSP 1 Score: 211 bits (537), Expect = 1.790e-68
Identity = 104/117 (88.89%), Postives = 114/117 (97.44%), Query Frame = 0

Query:    5 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 121
            Y K +S+TAM+ANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVLI+GFGR+GHAVGDIPGVRFKVVKVAGVSLLALYK+KKEKPRS
Sbjct:   27 YCKKNSITAMRANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRKGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 143

[Close]

BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: A0A5A8EIQ0_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EIQ0_CAFRO)

HSP 1 Score: 211 bits (536), Expect = 2.710e-68
Identity = 105/117 (89.74%), Postives = 111/117 (94.87%), Query Frame = 0

Query:    5 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 121
            YNKSHS+TAMKANP GG+SMAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+AAFVPRDG LNF DENDEVLISGFGR GHAVGDIPGVRFKVVKVAGVSLLAL+K KKEKPRS
Sbjct:   29 YNKSHSITAMKANPFGGASMAKGIVLEKMGVEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGSLNFVDENDEVLISGFGRAGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRS 145

[Close]

BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: A0A8E8PJI4_9STRA (40S ribosomal protein S23 n=2 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJI4_9STRA)

HSP 1 Score: 210 bits (535), Expect = 3.850e-68
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 0

Query:    5 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 121
            YNKSHSV AMKANPLGGSSMAKGIV+EKIGIEAKQPNSAIRKCVRVQLIKN KK+ AFVP DGCLNF DENDEVL+SGFGR GHAVGDIPGVRFKVVKVAGVSLLAL+K KKEKPR+
Sbjct:   29 YNKSHSVAAMKANPLGGSSMAKGIVVEKIGIEAKQPNSAIRKCVRVQLIKNSKKITAFVPNDGCLNFVDENDEVLVSGFGRSGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRA 145

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FUM9_ECTSI	4.210e-76	98.33	Ribosomal protein S23, component of cytosolic 80S ...	[more]
A0A835Z8V8_9STRA	2.170e-74	94.17	Putative ribosomal protein S23 n=1 Tax=Tribonema m...	[more]
A0A4W5LQ08_9TELE	5.420e-73	93.28	40S ribosomal protein S23 n=31 Tax=Eukaryota TaxID...	[more]
M4BPE8_HYAAE	9.870e-71	92.44	Uncharacterized protein n=2 Tax=Peronosporaceae Ta...	[more]
A0A7R9WFA5_9STRA	3.760e-70	89.92	Hypothetical protein n=4 Tax=Bacillariophyta TaxID...	[more]
B8C1Z7_THAPS	2.170e-69	89.74	RS23, ribosomal protein 23 40S small ribosomal sub...	[more]
W7TKK2_9STRA	6.650e-69	87.50	40s ribosomal protein s23 n=2 Tax=Monodopsidaceae ...	[more]
A0A6U0RBQ4_9STRA	1.790e-68	88.89	Hypothetical protein n=2 Tax=Mediophyceae TaxID=58...	[more]
A0A5A8EIQ0_CAFRO	2.710e-68	89.74	Uncharacterized protein n=2 Tax=Cafeteria roenberg...	[more]
A0A8E8PJI4_9STRA	3.850e-68	89.74	40S ribosomal protein S23 n=2 Tax=Placidida sp. Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 3..121 e-value: 1.1E-63 score: 214.0
None	No IPR available	PANTHER	PTHR11652:SF14	40S RIBOSOMAL PROTEIN S23	coord: 2..121
IPR006032	Ribosomal protein S12/S23	PIRSF	PIRSF002133	RPS12p_RPS12a_RPS23e_RPS12o	coord: 1..121 e-value: 5.6E-31 score: 104.6
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 8..120 e-value: 6.0E-50 score: 167.6
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 2..121
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 38..45
IPR005680	Ribosomal protein S23, eukaryotic/archaeal	TIGRFAM	TIGR00982	TIGR00982	coord: 4..120 e-value: 3.9E-49 score: 163.9
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 4..119

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1494	contig	F-serratus_M_contig1494:22856..23896 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1494.3399.1	mRNA_F-serratus_M_contig1494.3399.1	Fucus serratus male	mRNA	F-serratus_M_contig1494 22856..23896 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig1494.3399.1 ID=prot_F-serratus_M_contig1494.3399.1|Name=mRNA_F-serratus_M_contig1494.3399.1|organism=Fucus serratus male|type=polypeptide|length=122bp
SSQDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRV
QLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKV
VKVAGVSLLALYKDKKEKPRS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006032	Ribosomal_S12/S23
IPR005680	Ribosomal_S23_euk/arc
IPR012340	NA-bd_OB-fold