prot_F-serratus_M_contig142.3022.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig142.3022.1
Unique Name	prot_F-serratus_M_contig142.3022.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	259

Homology

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BLAST of mRNA_F-serratus_M_contig142.3022.1 vs. uniprot
Match: D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 2.450e-100
Identity = 198/241 (82.16%), Postives = 208/241 (86.31%), Query Frame = 0

Query:    1 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFEDPRDADEAVRARDGYEFDGHRLRVEMSRGKRDFGGGFGGGGXXYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------RQTEFRTVVTGLPMSASWQDLKDHMRKASAGDVTYADVDHKGGGVVHFGNRDDMEYALRKLDGSEFSNRYDSASIQVLPHRDSVRYFSRSRSRSRSPPRRERDR 235
            MSRLYIGNLPMDMKEKDLEDIFYKYGKITD+QLKMPERPPAFGFVTFED RDADEAVRARDGY+FDG+RLRVEMSRGKR+FGGGFG   XX  XXXXXXXXXXXXXXXXX  XXX XXXXXXXXXX           RQTE+R VVTGLP SASWQDLKDHMRKA  GDV YADVDHKGGGVVHF N++ M+YALRKLDGSEFSNRYD+A+I VLPHRDSVR    SRSRSRSPPRRER R
Sbjct:   53 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKREFGGGFGXXXXXXXXXXXXXXXXXXXXXXXXYGXXXGXXXXXXXXXXMGPPRGGFGGGRQTEYRAVVTGLPQSASWQDLKDHMRKA--GDVNYADVDHKGGGVVHFNNKEGMDYALRKLDGSEFSNRYDTATISVLPHRDSVRD---SRSRSRSPPRRERSR 288

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BLAST of mRNA_F-serratus_M_contig142.3022.1 vs. uniprot
Match: A0A6H5KN34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 9.290e-89
Identity = 179/218 (82.11%), Postives = 187/218 (85.78%), Query Frame = 0

Query:    1 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFEDPRDADEAVRARDGYEFDGHRLRVEMSRGKRDFGGGFG----------GGGXXYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRTVVTGLPMSASWQDLKDHMRKASAGDVTYADVDHKGGGVVHFGNRDDMEYALRKLDGSEFSNRYDSASIQV 208
            MSRLYIGNLPMDMKEKDLEDIFYKYGKITD+QLKMPERPPAFGFVTFEDPRDADEAVRARDGY+FDG+RLRVEMSRGKR+FGGGFG          GGG X         XXXXXXXXXXXXXXXXXXXXXXX XXXXXX RQTE+R VVTGLP SASWQDLKDHMRKA  GDV YADVDHKGGGVVHF NR+ M+YALRKLDGSEFSNRYD+A I V
Sbjct:   61 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKREFGGGFGXXXXXXXXXXGGGGXX--------XXXXXXXXXXXXXXXXXXXXXXXPXXXXXXGRQTEYRAVVTGLPQSASWQDLKDHMRKA--GDVNYADVDHKGGGVVHFNNREGMDYALRKLDGSEFSNRYDTAIISV 268

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BLAST of mRNA_F-serratus_M_contig142.3022.1 vs. uniprot
Match: D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 1.710e-76
Identity = 140/236 (59.32%), Postives = 165/236 (69.92%), Query Frame = 0

Query:    1 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFEDPRDADEAVRARDGYEFDGHRLRVEMSRGKRD-FGGGFGGGGXXYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRTVVTGLPMSASWQDLKDHMRKASAGDVTYADVDHKGGGVVHFGNRDDMEYALRKLDGSEFSNRYDSASIQVLPHRDSVRYFSRSRSRSRSPPRRERDR 235
            M+R+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGF+TF+D RDA+EAVRARDGY+ DG RLRVE+SRG+RD FG G GG G   G       XXXXXX                         +QTE+R +VTGLP SASWQDLKDHMRKA  G+ TY DVDHKGGG+VHF  RDDM+YALRKLDGS+F N ++ + I VLPHR  V     SRSRSRSP R  R R
Sbjct:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGGGHGGRMGMPMGGGRXXXXXXGGAGF--------------------QQTEYRVIVTGLPPSASWQDLKDHMRKA--GEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISVLPHRG-VGGGRDSRSRSRSPKRSRRAR 213

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BLAST of mRNA_F-serratus_M_contig142.3022.1 vs. uniprot
Match: A0A835YQ88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA)

HSP 1 Score: 221 bits (562), Expect = 4.780e-68
Identity = 122/212 (57.55%), Postives = 146/212 (68.87%), Query Frame = 0

Query:    1 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFEDPRDADEAVRARDGYEFDGHRLRVEMSRGKRDFGGGFGGGGXXYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRTVVTGLPMSASWQDLKDHMRKASAGDVTYADVDHKGGGVVHFGNRDDMEYALRKLDGSEFSNRYDSASIQVLPHR 212
            M+R+Y+GNLPM+++EKD+ED+FYK+G+I D+ LK P RPPAF FV F+D RDA++AVRARDGYE DG RLRVE++RG R                                    XXXXXXXXX       RQTE+R +VTGLP SASWQDLKDHMRKA  GDV Y DVDH+GGG+VH+  RDDMEYALRKLD SEF N +D + I+VLPHR
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKFGRIRDIDLKTPARPPAFAFVAFDDVRDAEDAVRARDGYEMDGERLRVELARGARG---------------------------------PPXXXXXXXXXGQPMGGGRQTEWRVIVTGLPPSASWQDLKDHMRKA--GDVVYTDVDHRGGGIVHYNTRDDMEYALRKLDDSEFRNPFDHSFIRVLPHR 177

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BLAST of mRNA_F-serratus_M_contig142.3022.1 vs. uniprot
Match: A0A836CC30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC30_9STRA)

HSP 1 Score: 221 bits (563), Expect = 1.950e-67
Identity = 123/226 (54.42%), Postives = 150/226 (66.37%), Query Frame = 0

Query:    1 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFEDPRDADEAVRARDGYEFDGHRLRVEMSRGKRDFGGGFGG----------GGXXYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRTVVTGLPMSASWQDLKDHMRKASAGDVTYADVDHKGGGVVHFGNRDDMEYALRKLDGSEFSNRYDSASIQVLPHRDSVR 216
            M+R+Y+GNLPM+++EKD+ED+FYKYG+I D+ LK P RPP+F FV FED RDA++AV  RDGYE DG RLRVE++RG R+ G  FGG          GG  +G    XXXXX                             RQTE+R +VTGLP SASWQDLKDHMRKA  GDV Y DVDH+GGG+VH+  R DM+YALRKLD SEF N +D + I+VLPHR + R
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKYGRIRDIDLKTPARPPSFAFVAFEDVRDAEDAVSGRDGYEMDGQRLRVELARGARERG--FGGXXXXXFDERGGGRGFGAGRGXXXXXGPPMGGG----------------------RQTEWRVIVTGLPPSASWQDLKDHMRKA--GDVVYTDVDHRGGGIVHYATRSDMDYALRKLDDSEFRNPFDKSYIRVLPHRANAR 200

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BLAST of mRNA_F-serratus_M_contig142.3022.1 vs. uniprot
Match: K7VZN2_MAIZE (Serine/arginine-rich-splicing factor SR34 n=3 Tax=Zea mays TaxID=4577 RepID=K7VZN2_MAIZE)

HSP 1 Score: 190 bits (482), Expect = 5.200e-56
Identity = 109/234 (46.58%), Postives = 139/234 (59.40%), Query Frame = 0

Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFEDPRDADEAVRARDGYEFDGHRLRVEMSRGKR------DFGGGFGGGGXXYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRTVVTGLPMSASWQDLKDHMRKASAGDVTYADVDHKGGG---VVHFGNRDDMEYALRKLDGSEFSNRYDSASIQVLPHRDSVRYFSRSRSRSRSP 228
            +Y+GNLP D++E+++ED+FYKYGKI D+ LK+P RPP + FV FEDPRDA+EA+  RDGY FDGHRLRVE + G R      D   GFGGGG                                          R +E+R +VTGLP SASWQDLKDHMRKA  GDV +++V  +GGG   +V + N DDM+YA++KLD +EF N +  A I+V  +        RS SRSRSP
Sbjct:    9 IYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEEAIAGRDGYNFDGHRLRVEAAHGGRGNASSHDRSSGFGGGGGA-----------------------------------RRGVSRHSEYRVLVTGLPSSASWQDLKDHMRKA--GDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDTEFRNAFGRAYIRVKEYNGKR---GRSYSRSRSP 202

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BLAST of mRNA_F-serratus_M_contig142.3022.1 vs. uniprot
Match: Q64HC3_MAIZE (ASF/SF2-like pre-mRNA splicing factor SRP32 n=10 Tax=Panicoideae TaxID=147369 RepID=Q64HC3_MAIZE)

HSP 1 Score: 190 bits (482), Expect = 5.510e-56
Identity = 109/234 (46.58%), Postives = 139/234 (59.40%), Query Frame = 0

Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFEDPRDADEAVRARDGYEFDGHRLRVEMSRGKR------DFGGGFGGGGXXYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRTVVTGLPMSASWQDLKDHMRKASAGDVTYADVDHKGGG---VVHFGNRDDMEYALRKLDGSEFSNRYDSASIQVLPHRDSVRYFSRSRSRSRSP 228
            +Y+GNLP D++E+++ED+FYKYGKI D+ LK+P RPP + FV FEDPRDA+EA+  RDGY FDGHRLRVE + G R      D   GFGGGG                                          R +E+R +VTGLP SASWQDLKDHMRKA  GDV +++V  +GGG   +V + N DDM+YA++KLD +EF N +  A I+V  +        RS SRSRSP
Sbjct:    9 IYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEEAIAGRDGYNFDGHRLRVEAAHGGRGNASSHDRSSGFGGGGGA-----------------------------------RRGVSRHSEYRVLVTGLPSSASWQDLKDHMRKA--GDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDTEFRNAFGRAYIRVKEYNGKR---GRSYSRSRSP 202

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BLAST of mRNA_F-serratus_M_contig142.3022.1 vs. uniprot
Match: A0A804R7I7_MAIZE (Uncharacterized protein n=6 Tax=Panicoideae TaxID=147369 RepID=A0A804R7I7_MAIZE)

HSP 1 Score: 190 bits (482), Expect = 8.950e-56
Identity = 109/234 (46.58%), Postives = 139/234 (59.40%), Query Frame = 0

Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFEDPRDADEAVRARDGYEFDGHRLRVEMSRGKR------DFGGGFGGGGXXYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRTVVTGLPMSASWQDLKDHMRKASAGDVTYADVDHKGGG---VVHFGNRDDMEYALRKLDGSEFSNRYDSASIQVLPHRDSVRYFSRSRSRSRSP 228
            +Y+GNLP D++E+++ED+FYKYGKI D+ LK+P RPP + FV FEDPRDA+EA+  RDGY FDGHRLRVE + G R      D   GFGGGG                                          R +E+R +VTGLP SASWQDLKDHMRKA  GDV +++V  +GGG   +V + N DDM+YA++KLD +EF N +  A I+V  +        RS SRSRSP
Sbjct:    9 IYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEEAIAGRDGYNFDGHRLRVEAAHGGRGNASSHDRSSGFGGGGGA-----------------------------------RRGVSRHSEYRVLVTGLPSSASWQDLKDHMRKA--GDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDTEFRNAFGRAYIRVKEYNGKR---GRSYSRSRSP 202

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BLAST of mRNA_F-serratus_M_contig142.3022.1 vs. uniprot
Match: A0A2T7CCW0_9POAL (Uncharacterized protein n=5 Tax=Paniceae TaxID=147428 RepID=A0A2T7CCW0_9POAL)

HSP 1 Score: 186 bits (473), Expect = 1.170e-54
Identity = 108/234 (46.15%), Postives = 141/234 (60.26%), Query Frame = 0

Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFEDPRDADEAVRARDGYEFDGHRLRVEMSRGKR------DFGGGFGGGGXXYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRTVVTGLPMSASWQDLKDHMRKASAGDVTYADVDHKGGG---VVHFGNRDDMEYALRKLDGSEFSNRYDSASIQVLPHRDSVRYFSRSRSRSRSP 228
            +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FEDPRDA++A+  RDGY FDGHRLRVE + G R      D  GGFGGG                                           R +E+R +V+GLP SASWQDLKDHMRKA  GDV +++V  +GGG   +V + N DDM+YA++KLD +EF N +  A I+V  + D  R   RS SRSRSP
Sbjct:    9 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDAIAGRDGYNFDGHRLRVEPAHGGRGNASSHDRSGGFGGGARR-------------------------------------GVSRHSEYRVLVSGLPSSASWQDLKDHMRKA--GDVCFSEVYREGGGTIGIVDYTNYDDMKYAIKKLDDTEFRNAFGRAYIRVKEY-DGKR--GRSYSRSRSP 200

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BLAST of mRNA_F-serratus_M_contig142.3022.1 vs. uniprot
Match: A0A6P5EV55_ANACO (serine/arginine-rich-splicing factor SR34-like isoform X2 n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EV55_ANACO)

HSP 1 Score: 186 bits (472), Expect = 1.470e-54
Identity = 105/226 (46.46%), Postives = 137/226 (60.62%), Query Frame = 0

Query:    4 LYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFEDPRDADEAVRARDGYEFDGHRLRVEMSRGKR------DFGGGFGGGGXXYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTEFRTVVTGLPMSASWQDLKDHMRKASAGDVTYADVDHKGGG---VVHFGNRDDMEYALRKLDGSEFSNRYDSASIQVLPHRDSVRYFSR 220
            LY+GNLP D++E+++ED+FYKYG I  + LK+P RPP + FV FEDPRDA++A+R RDGY FDGHRLRVE++ G R      D G G GGGG                                          R++E+R +VTGLP SASWQDLKDHMR+A  GDV +++V  +GGG   +V + N DDM+YA+RKLD SEF N +  A I+V  + D+ R  SR
Sbjct:    9 LYVGNLPGDIREREVEDLFYKYGPIVGIDLKIPPRPPGYAFVEFEDPRDAEDAIRGRDGYNFDGHRLRVELAHGGRSQSSSFDRGSGHGGGGRR------------------------------------GSISRRSEYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSEVFREGGGTIGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVKEY-DAKRSLSR 195

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig142.3022.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig142.3022.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LPT5_ECTSI	2.450e-100	82.16	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KN34_9PHAE	9.290e-89	82.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LB97_ECTSI	1.710e-76	59.32	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YQ88_9STRA	4.780e-68	57.55	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CC30_9STRA	1.950e-67	54.42	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
K7VZN2_MAIZE	5.200e-56	46.58	Serine/arginine-rich-splicing factor SR34 n=3 Tax=...	[more]
Q64HC3_MAIZE	5.510e-56	46.58	ASF/SF2-like pre-mRNA splicing factor SRP32 n=10 T...	[more]
A0A804R7I7_MAIZE	8.950e-56	46.58	Uncharacterized protein n=6 Tax=Panicoideae TaxID=...	[more]
A0A2T7CCW0_9POAL	1.170e-54	46.15	Uncharacterized protein n=5 Tax=Paniceae TaxID=147...	[more]
A0A6P5EV55_ANACO	1.470e-54	46.46	serine/arginine-rich-splicing factor SR34-like iso...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 3..73 e-value: 2.3E-23 score: 93.6 coord: 137..205 e-value: 7.1E-6 score: 35.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 139..200 e-value: 6.2E-9 score: 35.6 coord: 4..71 e-value: 4.4E-19 score: 68.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 136..213 score: 10.428
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 2..77 score: 18.598
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 135..212 e-value: 1.2E-19 score: 72.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..82 e-value: 2.0E-25 score: 90.9
None	No IPR available	PANTHER	PTHR23147:SF140		coord: 4..258
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 4..258
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 2..202

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig142	contig	F-serratus_M_contig142:64632..69403 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig142.3022.1	mRNA_F-serratus_M_contig142.3022.1	Fucus serratus male	mRNA	F-serratus_M_contig142 64632..69403 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig142.3022.1 ID=prot_F-serratus_M_contig142.3022.1|Name=mRNA_F-serratus_M_contig142.3022.1|organism=Fucus serratus male|type=polypeptide|length=259bp
MSRLYIGNLPMDMKEKDLEDIFYKYGKITDLQLKMPERPPAFGFVTFEDP
RDADEAVRARDGYEFDGHRLRVEMSRGKRDFGGGFGGGGGGYGGGGGGGY
GGGGGGGYGGGGGYGGGGGHGGGFGGGFGGGRQTEFRTVVTGLPMSASWQ
DLKDHMRKASAGDVTYADVDHKGGGVVHFGNRDDMEYALRKLDGSEFSNR
YDSASIQVLPHRDSVRYFSRSRSRSRSPPRRERDRRRSRSRSPPPRDSYR
GRSRSRSR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf