prot_F-serratus_M_contig1414.2991.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1414.2991.1
Unique Nameprot_F-serratus_M_contig1414.2991.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length273
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: D8LT06_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT06_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 9.990e-76
Identity = 129/157 (82.17%), Postives = 134/157 (85.35%), Query Frame = 0 
Query:  112 PDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMAVEGASRMDYSTSDSTEQRSSS-SGATLSAGGKIPPPTSAAGEAGIGAGVTKLSLDKKVALLKLKLREA 267
            PDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYH VGPR GEPRGFCFVEYSNVD+A KAIRALHGRKLYGRPLRVR+M VEG  RMDYST+DS    ++S S  T   G KIPP   A GEAG  AGVTKLSLDKKVALLKLKLREA
Sbjct:  118 PDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDSKGSTATSGSFGTYGDGAKIPPTPGAGGEAGAAAGVTKLSLDKKVALLKLKLREA 274
[Close]
BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: A0A803MKS2_CHEQI (RRM domain-containing protein n=4 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MKS2_CHEQI)

HSP 1 Score: 97.4 bits (241), Expect = 2.540e-21
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 0 
Query:  110 SLPDVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVR 197
            S  D+ G+ NET    ++VGN+ +R+SEA ++K+F+PFGK+  E F  H  GP+RGEPRGF FV+YS  +EA  A   +HGR   GRPL VR
Sbjct:    9 SRKDLNGMSNETSDRRIYVGNIDHRISEATLLKMFSPFGKIESEDFLLHTRGPKRGEPRGFAFVQYSTKEEARLAKEKMHGRLACGRPLVVR 100
[Close]
BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: A0A565CPV0_9BRAS (RRM domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CPV0_9BRAS)

HSP 1 Score: 97.1 bits (240), Expect = 2.670e-21
Identity = 44/103 (42.72%), Postives = 67/103 (65.05%), Query Frame = 0 
Query:  111 LPDVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMAVEGASRMDY 209
            +PD  G  +E     L+VGNL  R++EA ++K+F+P+GK++ E F +H  GP++GEPRG+ FV+YS  +EA  A+  +HGR   GRPL VR+ + +      Y
Sbjct:    1 MPDTGGFVDEKNESRLYVGNLDLRINEAALLKMFSPYGKIISEDFLWHTRGPKKGEPRGYAFVQYSRKEEAEVAVEKMHGRLACGRPLVVRFASEKHLEESSY 103
[Close]
BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: A0A169WBX9_DAUCS (RRM domain-containing protein n=3 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A169WBX9_DAUCS)

HSP 1 Score: 97.4 bits (241), Expect = 3.890e-21
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 0 
Query:  122 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMA----VEGASRMD 208
            L++GNL +R++EA +IK+F+PFG +V E F +H  GP+RGEPRG+ FV+Y  V+EA  A   +HG+ +YGRPL VR  +    V+GA   D
Sbjct:   45 LYIGNLDFRITEAALIKMFSPFGTIVSEDFLWHTRGPKRGEPRGYAFVQYRTVEEAKLAKEKVHGKLVYGRPLVVRLASEKDLVDGAGSSD 135
[Close]
BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: A0A7J6EDI8_CANSA (RRM domain-containing protein n=5 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6EDI8_CANSA)

HSP 1 Score: 97.1 bits (240), Expect = 4.460e-21
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 0 
Query:  122 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMA----VEGASRMDYSTSDSTEQRSSSS 222
            L++GNL  R++EA +IK+F+PFGK+V E F +H  GP+RGEPRGF FVEYS  +EA  A   +HGR   GRPL V   +    VE A       S++ + R+S S
Sbjct:   35 LYIGNLDLRITEAALIKMFSPFGKIVSEDFIWHTRGPKRGEPRGFAFVEYSTKEEARLAKEKMHGRLACGRPLIVHLASNKYTVESAEHSSKGVSETNKARTSGS 139
[Close]
BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: W7TJX2_9STRA (Polyadenylate-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJX2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.810e-21
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 0 
Query:  101 GAGAAGTGESLP---DVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMAVEGASRMDYST 211
            GAGA   G+  P    + G P   LF+G+L+  V E  ++ LF P+GKVV   F +H  GPR+GEP+GFCFV Y+  +EAT AIRAL  R+L+GR + VRY        MD  T
Sbjct:    8 GAGARNAGKDDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDART 121
[Close]
BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: A0A7N2MIG0_QUELO (RRM domain-containing protein n=8 Tax=Fagaceae TaxID=3503 RepID=A0A7N2MIG0_QUELO)

HSP 1 Score: 96.7 bits (239), Expect = 5.240e-21
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 0 
Query:  122 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMA----VEGASRMDYSTSDSTEQRSSSSG 223
            L+VGNL  R++EA +IK+F+PFGK+V E F +H  GP+RGEPRGF F++YS  +EA  A   +HG+   GRPL VR  +    VE A ++     DS +   S SG
Sbjct:   16 LYVGNLDLRITEAALIKMFSPFGKIVAEDFLWHTRGPKRGEPRGFAFIQYSTKEEAKLAKEKMHGKLACGRPLVVRLASEKYLVETAEKLSKGVGDSHKTSLSGSG 121
[Close]
BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: K8YWR6_NANGC (RRM domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWR6_NANGC)

HSP 1 Score: 96.3 bits (238), Expect = 7.330e-21
Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 0 
Query:  116 GIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMAVEGASRMDYST 211
            G P   LF+G+L+  V E  ++ LF P+GKVV   F +H  GPR+GEP+GFCFV YS  +EAT AIRAL  R+L+GR + VRY      + MD  T
Sbjct:   10 GRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYSGTEEATSAIRALDRRRLHGRSIAVRYQRDADDTNMDART 105
[Close]
BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: A0A7C9DAW6_OPUST (RRM domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DAW6_OPUST)

HSP 1 Score: 95.9 bits (237), Expect = 7.350e-21
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = 0 
Query:  113 DVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYM-------AVEGASRMDYSTSDSTEQRSSS 221
            D+ G+ +E+    L+VGN+ +R+SEA +IK+F+PFGK+  E F  H  GP+RGEPRGF FV+YS   EA  A   +HGR   GRPL VR         A E  S+    T+ ST   SSS
Sbjct:    2 DLNGLSDESSERRLYVGNIDHRISEATLIKMFSPFGKIESEDFLLHTRGPKRGEPRGFAFVQYSTKWEARLAKEKMHGRLACGRPLVVRLASEKSAVEAAENLSKTSVVTNRSTSSSSSS 121
[Close]
BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Match: UPI000C1D519A (probable RNA-binding protein 18 isoform X1 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D519A)

HSP 1 Score: 95.9 bits (237), Expect = 9.750e-21
Identity = 57/150 (38.00%), Postives = 86/150 (57.33%), Query Frame = 0 
Query:  122 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMAVEGASRMDYSTSDSTEQRSSSSGATLSAGGKIPPPTSAAGEAGIGAGVTKLSLDKKVALLKLKLREATEKS 271
            L++GNL  R++EA +IK+F+PFGK+V E F +H+ GP+RGEPRG+ F+++S  +EA  A   +HGR   GRPL VR  + +  S +  ++S +    S SS   LSA G                   ++S   K+A +K KL+   E+S
Sbjct:   15 LYIGNLDLRITEAALIKMFSPFGKIVSEDFLWHNRGPKRGEPRGYAFIQFSTKEEAELAKEKMHGRMACGRPLVVRLASEKYTSEVAANSSKAVGDASRSS---LSASGS-----------------GQISRSAKIAAIKNKLKAMEEES 144
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1414.2991.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT06_ECTSI9.990e-7682.17RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A803MKS2_CHEQI2.540e-2151.09RRM domain-containing protein n=4 Tax=Chenopodium ... [more]
A0A565CPV0_9BRAS2.670e-2142.72RRM domain-containing protein n=1 Tax=Arabis nemor... [more]
A0A169WBX9_DAUCS3.890e-2149.45RRM domain-containing protein n=3 Tax=Daucus carot... [more]
A0A7J6EDI8_CANSA4.460e-2147.62RRM domain-containing protein n=5 Tax=Cannabis sat... [more]
W7TJX2_9STRA4.810e-2146.49Polyadenylate-binding protein n=1 Tax=Nannochlorop... [more]
A0A7N2MIG0_QUELO5.240e-2147.17RRM domain-containing protein n=8 Tax=Fagaceae Tax... [more]
K8YWR6_NANGC7.330e-2150.00RRM domain-containing protein (Fragment) n=1 Tax=N... [more]
A0A7C9DAW6_OPUST7.350e-2145.83RRM domain-containing protein n=1 Tax=Opuntia stre... [more]
UPI000C1D519A9.750e-2138.00probable RNA-binding protein 18 isoform X1 n=1 Tax... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 121..197
e-value: 1.0E-4
score: 31.7
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 121..197
e-value: 2.5E-23
score: 93.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 122..195
e-value: 2.1E-17
score: 62.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 120..201
score: 17.728
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 5..211
e-value: 5.9E-25
score: 90.1
NoneNo IPR availablePANTHERPTHR21245FAMILY NOT NAMEDcoord: 78..218
NoneNo IPR availablePANTHERPTHR21245:SF2RNA-BINDING PROTEIN 18-RELATEDcoord: 78..218
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 106..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1414contigF-serratus_M_contig1414:156182..163816 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1414.2991.1mRNA_F-serratus_M_contig1414.2991.1Fucus serratus malemRNAF-serratus_M_contig1414 156182..164632 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1414.2991.1 ID=prot_F-serratus_M_contig1414.2991.1|Name=mRNA_F-serratus_M_contig1414.2991.1|organism=Fucus serratus male|type=polypeptide|length=273bp
EVVVNTAEHESDVSGRTSNPASRDEEEAELRRRLLEKVHRDRNDAADLKS
GISGTSRSSELSTADLPPAKSRKTGVEDIDDEDASKLSSAGVPSETPKAT
GAGAAGTGESLPDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQ
FCYHHVGPRRGEPRGFCFVEYSNVDEATKAIRALHGRKLYGRPLRVRYMA
VEGASRMDYSTSDSTEQRSSSSGATLSAGGKIPPPTSAAGEAGIGAGVTK
LSLDKKVALLKLKLREATEKST*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003954RRM_dom_euk
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf