prot_F-serratus_M_contig14.2871.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig14.2871.1
Unique Nameprot_F-serratus_M_contig14.2871.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length303
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig14.2871.1 vs. uniprot
Match: A0A6H5J8H1_9PHAE (Structure-specific endonuclease subunit SLX4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H1_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.830e-21
Identity = 94/294 (31.97%), Postives = 125/294 (42.52%), Query Frame = 0 
Query:   59 VGDSEEAMPSFDQMSQQELTGMMSVYGLKRKSKREMVERLKRIWSALHPSAAVAPAASAA-----------------------SIEDGGFPPMSVDANSAGPAAGRSNDVSSRGHTKRLARADTAKAIASGRPPLAEPRAARDGVAGARGGEGDGVPPCPTSRQRP------------------------------------------SSSARGKDKEALVEQIHAAITGNEHLHEDILLLRTVELTATQQLVKDSGVKCSKRDLASFLDEKGITFIDRGGAGGKASAGRRKKE 287
            + +  E MPSF QM+ QEL GMM+VYGLK+KSKREM ERL+ IW  LHP+AA    ++A                        S + GG P   + A             SS+GH +       ++  A  RP  +                                                                        SS   G D + L E+I + I G   LHEDILLL+TV+L+A   L+K++GVKC+K+DLAS+LD +GITFIDRGG   +A  G R+ E
Sbjct: 1352 IAELREVMPSFGQMTLQELAGMMAVYGLKKKSKREMTERLEHIWKTLHPAAAEEGMSAAGDGNAXXXXXXXXXXXXXXXRDAPSRDSGGDPSAYLSA-------------SSQGHRR-------SRGAAEARPTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFLAENSSGRNGVDAD-LGERIRSVIMGYAPLHEDILLLKTVDLSAIHTLIKNAGVKCTKKDLASYLDSRGITFIDRGGVKRRARGGERETE 1624
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2871.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J8H1_9PHAE2.830e-2131.97Structure-specific endonuclease subunit SLX4 n=1 T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018574Structure-specific endonuclease subunit Slx4PFAMPF09494Slx4coord: 215..269
e-value: 1.5E-8
score: 34.5
NoneNo IPR availablePANTHERPTHR21541BTB POZ DOMAIN CONTAINING 12coord: 64..299

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig14contigF-serratus_M_contig14:91725..94081 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig14.2871.1mRNA_F-serratus_M_contig14.2871.1Fucus serratus malemRNAF-serratus_M_contig14 89935..95176 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig14.2871.1 ID=prot_F-serratus_M_contig14.2871.1|Name=mRNA_F-serratus_M_contig14.2871.1|organism=Fucus serratus male|type=polypeptide|length=303bp
MGKPRLASDAAPSEPRRELQKSPPESLPPMRNRSQSASTKPAPAAEADHR
AELNFDGGVGDSEEAMPSFDQMSQQELTGMMSVYGLKRKSKREMVERLKR
IWSALHPSAAVAPAASAASIEDGGFPPMSVDANSAGPAAGRSNDVSSRGH
TKRLARADTAKAIASGRPPLAEPRAARDGVAGARGGEGDGVPPCPTSRQR
PSSSARGKDKEALVEQIHAAITGNEHLHEDILLLRTVELTATQQLVKDSG
VKCSKRDLASFLDEKGITFIDRGGAGGKASAGRRKKEKRPTDRAGRGTAS
RR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018574Structure-sp_endonuc_su_Slx4